New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 5583793	28 (1.090)	5 (0.200)	3/276	3.4	16.0%	coding (1939/2259 nt)	parC	DNA topoisomerase IV subunit A
	?	NC_002947	= 5583844	26 (1.060)					coding (1888/2259 nt)	parC	DNA topoisomerase IV subunit A
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

TTGCCCTTGCCTTTACCCAGCTGTGGCAAGTCGCTGACCTTGAACACCAGCAGGCGGCCTTCGGTGGTCACCGCCGCCAACCAGTCCTGCTCGCGATCGGCCACCGGGCGCGGGGTCATGACCTTGGCCCCGTTGGGCAAGCTGAGCAGGCCTTTGCCGGCCTTGTTCTTGGCCTGCAGGTCTTCACCCTTGACCACGAAGCCGTAACCGGCATCCGAAGCCACCACGTACAGCGCATCGTCGTCAGGCAACAACACACATTCGAAAGTCGC  >  NC_002947/5583702‑5583973                                                                                                                                               |                                                                                                                                  ttgCCCTTGCCTTTACCCAGCTGTGGCAAGTCGCTGACCTTGAACACCAGCAGGCGGCCTTCGGTGGTCACCGCCGCCAACCAGTCCTGCTCGCGATCGGCCACCGGGCGCGGGGTCATGACCTTGGCCCCGTTGGGCAAGCTGAg                                                                                                                                <  5:22236/146‑1 (MQ=255) ttgCCCTTGCCTTTACCCAGCTGGGGCAAGTCGCTGACCTTGAACACCAGCAGGCGGCCTTCGGTGGGCACCGCCGCCAACCAGTCCTGCTCGCGAGCGGCCACCGGGCGCGGGGTCATGACCTTGGCCCCGTTGGGCAAGCTGAg                                                                                                                                <  7:123951/146‑1 (MQ=255)     ccTTGCCCTTACCCAGCTGTGGCAAGTCGCTGACCTTGAACACCAGCAGGCGGCCTTCGGTGGTCACCGCCGCCAACCAGTCCTGCTCGCGATCGGCCACCGGGCGCGGGGTCATGACCTTGGCCCCGTTGGGCAAGCTGAGCAGGc                                                                                                                           <  8:72288/147‑1 (MQ=255)            tttACCCAGCTGTGGCAAGTCGCTGACCTTGAACACCAGCAGGCGGCCTTCGGTGGTCACCGCCGCCAACCAGTCCTGCTCGCGATCGGCCACCGGGCGCGGGGTCATGCCCTTGGCCCCGTTGGGCAAGCTGAGCAGGCCTTTGCCg                                                                                                                   >  8:57810/1‑148 (MQ=255)            tttACCCAGCTGTGGCAAGTCGCTGACCTTGAACACCAGCAGGCGGCCTTCGGTGGTCACCGCCGCCAACCAGTCCTGCTCGCGATCGGCCACCGGGCGCGGGGTCATGACCTTGGCCCCGTTGGGCAAGCTGAGCAGGCCTTTGCCg                                                                                                                   <  5:63638/148‑1 (MQ=255)                cccAGCTGTGGCAAGTCGCTGACCTTGAACACCAGCAGGCGGCCTTCGGTGGTCACCGCCGCCAACCAGTCCTGCTCGCGATCGGCCACCGGGCGCGGGGTCATGACCTTGGCCCCGGTGGGCAAGCTGAGCAGGCCTTTGCCGGcc                                                                                                                <  4:3738/147‑1 (MQ=255)                  cAGCTGTGGCAAGTCGCTGACCTTGAACACCATCAGGCGGCCTTCTGTGGTCACCGCCGCCAACCAGTCCTGCTCGCGATCGGCCACCGGGCGCGGGGTCATGACCTTGGCCCCGTTGGGCAAGCTGAGCAGGCCTTTGCCGGCCTTg                                                                                                             <  3:63594/148‑1 (MQ=255)                   aGCTGTGGCAAGTCGCTGACCTTGAACACCAGCAGGCGGCCTTCGGTGGTCACCGCCGCCAACCAGTCCTGCTCGCGATCGGCCACCGGGCGCGGGGTCATGACCTTGGCCCCGTTGGGCAAGCTGAGCAGGCCTTTGCCGGCCTTGt                                                                                                            >  5:431/1‑148 (MQ=255)                     cTGTGGCAAGTCGCTGACCTTGAACACCAGCAGGCGGCCTTCGGTGGTCACCGCCGCCAACCAGTCCTGCTCGCGATCGGCCACCGGGCGCGGGGTCATGACCTTGGCCCCGTTGGGCAAGCTGAGCAGGCCTTTGCCGGCCTTGTTc                                                                                                          >  8:45379/1‑148 (MQ=255)                          gCAAGTCGCTGACCTTGAACACCAGCAGGCGGCCTTCGGTGGTCACCGCCGCCAACCAGTCCTGCTCGCGATCGGCCACCGGGCGCGGGGTCATGACCTTGGCCCCGTTGGGCAAGCTGAGCAGGCCTTTGCCGGCCTTGTTCTTGGc                                                                                                     >  1:43872/1‑148 (MQ=255)                                cGCTGACCTTGAACACCAGCAGGCGGCCTTCGGTGGTCACCGCCGCCAACCAGTCCTGCTCGCGATCGGCCACCGGGCGCGGGGTCATGACCTTGGCCCCGTTGGGCAAGCTGAGCAGGCCTTTGCCGGCCTTGTTCTTGGCCTGCAg                                                                                               <  8:34592/148‑1 (MQ=255)                                  cTGACCTTGAACACCAGCAGGCGGCCTTCGGTGGTCACCGCCGCCAACCAGTCCTGCTCGCGATCGGCCACCGGGCGCGGGGTCATGACCTTGGCCCCGTTGGGCAAGCTGAGCAGGCCTTTGCCGGCCTTGTTCTTGGCCTGCAGGt                                                                                             <  3:22573/148‑1 (MQ=255)                                   tGACCTTGAACACCAGCAGGCGGCCTTCGGTGGTCACCGCCGCCAACCAGTCCTGCTCGCGATCGGCCACCGGGCGCGGGGTCATGACCTTGGCCCCGTTGGGCAAGCTGAGCAGGCCTTTGCCGGCCTTGTTCTTGGCCTGCAGGTc                                                                                            >  1:31780/1‑148 (MQ=255)                                   tGACCTTGAACACCAGCAGGCGGCCTTCGGTGGTCACCGCCGCCAACCAGTCCTGCTCGCGATCGGCCACCGGGCGCGGGGTCATGACCTTGGCCCCGTTGGGCAAGCTGAGCAGGCCTTTGCCGGCCTTGTTCTTGGCCTGCAGGTc                                                                                            <  8:24197/148‑1 (MQ=255)                                                            ttCGGTGGGCACCGCCGCCAACCAGTCCTGCTCGCGATCGGCCACCGGGCGCGGGGTCATGACCTTGGCCCCGTTGGGCAAGCTGAGCAGGCCTTTGCCGGCCTTGTTCTTGGCCTGCAGGTCTTCACCCTTGACCACGAAGCCGTaa                                                                   <  5:15605/148‑1 (MQ=255)                                                                gtggtCACCGCCGCCAACCAGTCCTGCTCGCGATCGGCCACCGGGCGCGGGGTCATGACCTTGGCCCCGTTGGGCAAGCTGAGCAGGCCTTTGCCGGCCTTGTTCTTGGCCTGCAGGTCTTCACCCTTGACCACGAAGCCGTAACCg                                                                >  8:82833/1‑147 (MQ=255)                                                                              cAACCAGTCCTGCTCGCGATCGGCCACCGGGCGCGGGGTCATGACCTTGGCCCCGTTGGGCAAGCTGAGCAGGCCTTTGCCGGCCTTGTTCTTGGCCTGCAGGTCTTCACCCTTGACCACGAAGCCGTAACCGGCATCCGAAGccacc                                                 >  3:11491/1‑148 (MQ=255)                                                                                aCCAGTCCTGCTCGCGATCGGCCACCGGGCGCGGGGTCATGACCTTGGCCCCGTTGGGCAAGCTGAGCAGGCCTTTGCCGGCCTTGTTCTTGGCCTGCAGGTCTTCACCCTTGACCACGAAGCCGTAACCGGCATCCGAAGCcaccac                                               <  7:45379/148‑1 (MQ=255)                                                                                 ccAGTCCTGCTCGCGATCGGCCACCGGGCGCGGGGTCATGACCTTGGCCCCGTTGGGCAAGCTGAGCAGGCCTTTGCCGGCCTTGTTCTTGGCCTGCAGGTCTTCACCCTTGACCACGAAGCCGTAACCGGCATCCGAAGCcaccac                                               >  8:113179/1‑147 (MQ=255)                                                                                           tCGCGATCGGCCACCGGGCGCGGGGTCATGACCTTGGCCCCGTTGGGCAAGCTGAGCAGGCCTTTGCCGGCCTTGTTCTTGGCCTGCAGGTCTTCACCCTTGACCACGAAGCCGTAACCGGCATCCGAAGCCACCACGTACAGCGCAt                                    >  3:111543/1‑148 (MQ=255)                                                                                               gATCGGCCACCGGGCGCGGGGTCATGACCTTGGCCCCGTTGGGCAAGCTGAGCAGGCCTTTGCCGGCCTTGTTGTTGGCCTGCAGGTCTTCACCCTTGACCACGAAGCCGTAACCGGCATCCGAAGCCACCACGTACAGCGCAtcgtc                                <  6:131430/148‑1 (MQ=255)                                                                                                    gCCACCGGGCGCGGGGTCATGACCTTGGCCCCGTTGGGCAAGCTGAGCAGGCCTTTGCCGGCCTTGATCTTGGCCTGCAGGTCTTCACCCTTGACCACGAAGCCGTAACCGGCATCCGAAGCCACCACGTACAGCGCATCGTCGTCAg                           <  5:117223/148‑1 (MQ=255)                                                                                                      cACCGGGCGCGGGGTCATGACCTTGGCCCCGTTGGGCAAGCTGAGCAGGCCTTTGCCGGCCTTGTTCTTGGCCTGCAGGTCTTCACCCTTGACCACGAAGCCGTAACCGGCATCCGAAGCCACCACGTACAGCGCATCGTCGTCAGGc                         <  1:148744/148‑1 (MQ=255)                                                                                                           ggCGCGGGGTCATGACCTTGGCCCCGTTGGGCAAGCTGAGCAGGCCTTTGCCGGCCTTGTTCTTGGCCTGCAGGTCTTCACCCTTGACCACGAAGCCGTAACCGGCATCCGAAGCCACCACGTACAGCGCATCGTCGTCAGGcaacaa                    <  6:431/148‑1 (MQ=255)                                                                                                                ggggTCATGACCTTGGCCCCGTTGGGCAAGCTGAGCAGGCCTTTGCCGGCCTTGTTCTTGGCCTGCAGGTCTTCACCCTTGACCACGAAGCCGTAACCGGCATCCGAAGCCACCACGTACAGCGCATCGTCGTCAGGCAACAacacac               >  6:66899/1‑148 (MQ=255)                                                                                                                      aTGACCTTGGCCCCGTTGGGCAAGCTGAGCAGGCCTTTGCCGGCCTTGTTCTTGGCCTGCAGGTCTTCACCCTTGACCACGAAGCCGTAACCGGCATCCGAAGCCACCACGTACAGCGCATCGTCGTCAGGCAACAACACACATTCg          >  2:38745/1‑147 (MQ=255)                                                                                                                        gACCTTGGCCCCGTTGGGCAAGCTGAGCAGGCCTTTGCCGGCCTTGGTCTTGGCCGGCAGGTCTTCACCCTTGACCACTAAGCCGTAACCGGCATCCGAAGCCACCACGTACAGCGCATCGTCGTCAGGCAACAACACACATTCTaaa       <  4:100968/148‑1 (MQ=255)                                                                                                                               gCCCCGTTGGGCAAGCTGAGTAGGCCTTTGCCGGCCTTGTTCTTGGCCTGCAGGTCTTCACCCTTGACCACGAAGCCGTAACCGGCATCCGAAGCCACCACGTACAGCGCATCGTCGTCAGGCAACAACACACATTCGAAAGTCGc  <  1:54681/146‑1 (MQ=255)                                                                                                                                               |                                                                                                                                  TTGCCCTTGCCTTTACCCAGCTGTGGCAAGTCGCTGACCTTGAACACCAGCAGGCGGCCTTCGGTGGTCACCGCCGCCAACCAGTCCTGCTCGCGATCGGCCACCGGGCGCGGGGTCATGACCTTGGCCCCGTTGGGCAAGCTGAGCAGGCCTTTGCCGGCCTTGTTCTTGGCCTGCAGGTCTTCACCCTTGACCACGAAGCCGTAACCGGCATCCGAAGCCACCACGTACAGCGCATCGTCGTCAGGCAACAACACACATTCGAAAGTCGC  >  NC_002947/5583702‑5583973

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.