New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 693838	40 (0.770)	4 (0.080)	4/252	NT	9.7%	coding (204/918 nt)	PP_0595	LysR family transcriptional regulator
	?	NC_002947	= 693882	36 (0.720)					coding (160/918 nt)	PP_0595	LysR family transcriptional regulator

GCCGCGCAAATGCTGGTGCAGGCCGTTGACCTCGGTGCGGAAGGTTTCCAGCGCGCTGAGCAGTTGCAGGGCTGAATGGTAGACCTCGCGGCCTTCCTCCGTCAGCGAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/693730‑693838 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgagCAA‑CGCCTCGGCCTGCGCCTGTGTCAGCGCGGCCGCGCCGGTTTCTCGCTGACGGAGGAAGGCCGCGAGGTCTACCATTCAGCCCTGCAACTGCTCAGCGCGCTGGAAACCTTCCGCACCGAGGTCAACGGCC  <  NC_002947/693882‑693750                                                                                                                                                                                                                                                     GCCGCGCAAATGCTGGTGCAGGCCGTTGACCTCGGTGCGGAAGGTTTCCAGCGCGCTGAGCAGTTGCAGGGCTGAATGGTAGAGCTCGCGGCCTTCCTCCGTCAGCGAGAAACCGCCTCGGCCTGCGCCTGTGTCAGCGCGGCCGCGCC                                                                                                <  7:232521/149‑1    GCGCAAATGCTGGTGCAGGCCGTTGACCTCGGTGCGGAAGGTTTCCAGCGCGCTGAGCAGTTGCAGGGCTGAATGGTAGACCTCGCGGCCTTCCTCCGTCAGCGAGCAA‑CGCCTCGGCCTGCGCCTGTGTCAGCGCGGCCGCGCCGGTT                                                                                            >  4:154626/1‑149             CTGGTGCAGGCCGTTGACCTCGGTGCGGAAGGTTTCCAGCGCGCTGAGCAGTTGCAGGGCTGAATGGTAGACCTCGCGGCCTTCCTCCGTCAGCGAGCAA‑CGCCTCGGCCTGCGCCTGTGTCAGCGCGGCCGCGCCGGTTTCTCGCTGA                                                                                   <  3:154626/149‑1              TGGTGCAGGCCGTTGACCTCGGTGCGGAAGGTTTCCAGCGCGCTGAGCAGTTGCAGGGCTGAATGGTAGACCTCGCGGCCTTCCTCCGTCAGCGAGCAA‑CGCCTCGGCCTGCGCCTGTGTCAGCGCGGCCGCGCCGGTTTCTCGCTGAC                                                                                  <  8:302693/149‑1                                                                                                             GCAA‑CGCCTCGGCCTGCGCCTGTGTCAGCGCGGCCGCGCCGGTTTCTCGCTGACGGAGGAAGGCCGCGAGGTCTACCATTCAGCCCTGCAACTGCTCAGCGCGCTGGAAACCTTCCGCACCGAGGTCAACGGCC  >  7:233724/1‑134                                                                                                             GCAA‑CGCCTCGGCCTGCGCCTGTGTCAGCGCGGCCGCGCCGGTTTCTCGCTGACGGAGGAAGGCCGCGAGGTCTACCATTCAGCCCTGCAACTGCTCAGCGCGCTGGAAACCTTCCGCACCGAGGTCAACGGCC  <  8:233724/134‑1                                                                                                                                                                                                                                                     GCCGCGCAAATGCTGGTGCAGGCCGTTGACCTCGGTGCGGAAGGTTTCCAGCGCGCTGAGCAGTTGCAGGGCTGAATGGTAGACCTCGCGGCCTTCCTCCGTCAGCGAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/693730‑693838 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgagCAA‑CGCCTCGGCCTGCGCCTGTGTCAGCGCGGCCGCGCCGGTTTCTCGCTGACGGAGGAAGGCCGCGAGGTCTACCATTCAGCCCTGCAACTGCTCAGCGCGCTGGAAACCTTCCGCACCGAGGTCAACGGCC  <  NC_002947/693882‑693750

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.