New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 693838	40 (0.770)	4 (0.080)	4/252	NT	9.7%	coding (204/918 nt)	PP_0595	LysR family transcriptional regulator
	?	NC_002947	= 693882	36 (0.720)					coding (160/918 nt)	PP_0595	LysR family transcriptional regulator

CAAATGCTGGTGCAGGCCGTTGACCTCGGTGCGGAAGGTTTCCAGCGCGCTGAGCAGTTGCAGGGCTGAATGGTAGACCTCGCGGCCTTCCTCCGTCAGCGAGAAACCGGCGCGGCCGCGCTGACACAGGCGCAGGCCGAGGCG‑TTGCTCGAGGTCGTTCATCTGCTGGCTGATGGCCGAGCGACCAATGCCCAGTACGTTTTCGGCAGCCGAGAAGCCACCGCACTCGACGACGCTGCGATAGATCTTCAGCAGGCGGATGTCGAAATCGCTGACTTG  >  NC_002947/693736‑694014                                                                                                                                                    |                                                                                                                                     gtcgagtgcggtggcttctcggctgccgaaaacgtactgggcattggtcgctcggccatcagccagcagatgaacGACCTCGCGGCCTTCCTCCGTCAGCGAGAAACCGGCGCGGCCGCGCTGACACAGGCGCAGGCCGAGGCG‑TTGCt                                                                                                                                    <  5:91793‑M1/74‑1 (MQ=255)        tGGTGCAGGCCGTTGACCTCGGTGCGGAAGGTTTCCAGCGCGCTGAGCAGTTGCAGGGCTGAATGGTAGACCTCGCGGCCTCCCTCCGTCAGCGAGAAACCGGCGCGGCCGCGCTGACACAGGCGCAGGCCGAGGCG‑TTGCTCGAgggc                                                                                                                             >  2:266950/1‑147 (MQ=255)          ggtggcttctcggctgccgaaaacgtactgggcattggtcgctcggccatcagccagcagatgaacGACCTCGCGGCCTTCCTCCGTCAGCGAGAAACCGGCGCGGCCGCGCTGACACAGGCGCAGGCCGAGGCG‑TTGCTCGAGGTCGt                                                                                                                           >  6:91793‑M1/67‑149 (MQ=255)          gTGCAGGCCGTTGACCTCGGTGCGGAAGGTTTCCAGCGCGCTGAGCAGTTGCAGGGCTGAATGGTAGACCTCGCGGCCTTCCTCCGTCAGCGAGAAACCGGCGCGGCCGCGCTGACACAGGCGCAGGCCGAGGCG‑TTGCTCGAGGTCga                                                                                                                           >  5:65843/1‑148 (MQ=255)            tggcttctcggctgccgaaaacgtactgggcattggtcgctcggccatcagccagcagatgaacGACCTCGCGGCCTTCCTCCGTCAGCGAGAAACCGGCGCGGCCGCGCTGACACAGGCTCAGGCCGAGGCG‑TTGCTCGAGGTCGTTc                                                                                                                         >  8:26615‑M1/65‑149 (MQ=255)            gCAGGCCGTTGACCTCGGTGCGGAAGGTTTCCAGCGCGCTGAGCAGTTGCAGGGCTGAATGGTAGACCTCGCGGCCTTCCTCCGTCAGCGAGAAACCGGCGCGGCCGCGCTGACACAGGCGCAGGCCGAGGCG‑TTGCTCGAGGTCGtt                                                                                                                          >  5:168340/1‑148 (MQ=255)               ggCCGTTGACCTCGGTGCGGAAGGTTTCCAGCGCGCTGAGCAGTTGCAGGGCTGAATGGTAGACCTCGCGGCCTTCCTCCGTCAGCGAGAAACCGGCGCGGCCGCGCTGACACAGGCGCAGGCCGAGGCG‑TTGc                                                                                                                                     <  8:233724‑M2/134‑2 (MQ=255)               ggCCGTTGACCTCGGTGCGGAAGGTTTCCAGCGCGCTGAGCAGTTGCAGGGCTGAATGGTAGACCTCGCGGCCTTCCTCCGTCAGCGAGAAACCGGCGCGGCCGCGCTGACACAGGCGCAGGCCGAGGCG‑TTGc                                                                                                                                     >  7:233724‑M2/1‑133 (MQ=255)                      gACCTCGGTGCGGAAGGTTTCCAGCGCGCTGAGCAGTTGCAGGGCTGAATGGTAGACCTCGCGGCCTTCCTCCGTCAGCGAGAAACCGGCGCGGCCGCGCTGACACAGGCGCAGGCCGAGGCG‑TTGCTCGAGGTCGTTCATCTgctggc                                                                                                               >  5:165265/1‑149 (MQ=255)                       aCCTCGGTGCTGAAGGTTTCCAGCGCGCTGAGCAGTTGCAGGGCTGAATGGTAGACCTCGCGGCCTTCCTCCGTCAGCGAGAAACCGGCGCGGCCGCGCTGACACAGGCGCAGGCCGAGGCG‑TTGCTCGAGGTCGTTCATCTgctggc                                                                                                               <  8:54203/148‑1 (MQ=255)                         cTCGGTGCGGAAGGTTTCCAGCGCGCTGAGCAGTTGCAGGGCTGAATGGTAGACCTCGCGGCCTTCCTCCGTCAGCGAGAAACCGGCGCGGCCGCGCTGACACAGGCGCAGGCCGAGGCG‑TTGCTCGAGGTCGTTCATCTGCTGGCTGa                                                                                                            >  2:165603/1‑149 (MQ=255)                          tCGGTGCGTAAGGTTTCCAGCGCGCTGAGCAGTTGCAGGGTTGAATGGTAGACCTCTGGGCATTCCTGCGTCTGCGATAAACCGGCTAGGCCGCGTTGACACTGGCGCAGGCAGAGGCG‑TTGCTCGAGGTCGTTAATCTGCTGGCTTAt                                                                                                           <  2:14450/149‑1 (MQ=255)                                 ggAAGGTTTCCAGCGCGCTGAGCAGTTGCAGGGCTGAATGGTAGACCTCGCGGCCTTCCTCCGTCAGCGAGAAACCGGCGCGGCCGCGCTGACACAGGCGCAGGCCGAGGCG‑TTGCTCGAGGTCGTTCATCTGCTGGCTGATGGCCGAg                                                                                                    >  1:38213/1‑149 (MQ=255)                                 ggAAGGTTTCCAGCGCGCTGAGCAGTTGCAGGGCTGAATGGTAGACCTCGCGGCCTTCCTCCGTCAGCGAGAAACCGGCGCGGCCGCGCTGACACAGGCGCAGGCCGAGGCG‑TTGCTCGAGGTCGTTCATCTGCTGGCTGATGGCCGAg                                                                                                    >  3:255947/1‑149 (MQ=255)                                  gAAGGTTTCCAGCGCGCTGAGCAGTTGCAGGGCTGAATGGTAGACCTCGCGGCCTTCCTCCGTCAGCGAGAAACCGGCGCGGCCGCGCTGACACAGGCGCAGGCCGAGGCG‑TTGCTCGAGGTCGTTCATCTGCTGGCTGATGGCCGAGc                                                                                                   >  1:227699/1‑149 (MQ=255)                                     ggTTTCCAGCGCGCTGAGCAGTTGCAGGGCTGAATGGTAGACCTCGCGGCCTTCCTCCGTCAGCGAGAAACCGGCGCGGCCGCGCTGACACAGGCGCAGGCCGAGGCG‑TTGCTCGAGGTCGTTCATCTGCTGGCTGATGGCCGAGCGAc                                                                                                >  1:117362/1‑149 (MQ=255)                                                        aGTTGCAGGGCTGAATGGTAGACCTCGCGGCCTTCCTCCGTCAGCGAGAAACCGGCGCGGCCGCGCTGACACAGGCGCAGGCCGAGGCG‑TTGCTCGAGGTCGTTCATCTGCTGGCTGATGGCCGAGCGACCAATGCCCAGTACGTTTTc                                                                             <  3:241621/149‑1 (MQ=255)                                                        aGTTGCAGGGCTGAATGGTAGACCTCGCGGCCTTCCTCCGTCAGCGAGAAACCGGCGCGGCCGCGCTGACACAGGCGCAGGCCGAGGCG‑TTGCTCGAGGTCGTTCATCTGCTGGCTGATGGCCGAGCGACCAATGCCCAGTACGTTTTc                                                                             <  6:65843/149‑1 (MQ=255)                                                         gTTGCAGGGCTGAATGGTAGACCTCGCGGCCTTCCTCCGTCAGCGAGAAACCGGCGCGGCCGCGCTGACACAGGCGCAGGCCGAGGCG‑TTGCTCGAGGTCGTTCATCTGCTGGCTGATGGCCGAGCGACCAATGCCCAGTACGTTTTCg                                                                            <  1:318484/149‑1 (MQ=255)                                                              aGGGCTGAATGGTAGACCTCGCGGCCTTCCTCCGTCAGCGAGAAACCGGCGCGGCCGCGCTGACACAGGCGCAGGCCGAGGCG‑TTGCTCGAGGTCGTTCATCTGCTGGCTGATGGCCGAGCGACCAATGCCCAGTACGTTTTCGGCAGc                                                                       <  6:168340/149‑1 (MQ=255)                                                               gggCTGAATGGTAGACCTCGCGGCCTTCCTCCGTCAGCGAGAAACCGGCGCGGCCGCGCTGACACAGGCGCAGGCCGAGGCG‑TTGCTCGAGGTCGTTCATCTGCTGGCTGATGGCCGAGCGACCAATGCCCAGTACGTTTTCGGCAGcc                                                                      >  4:42940/1‑149 (MQ=255)                                                                   tGAATGGTAGACCTCGCGGCCTTCCTCCGTCAGCGAGAAACCGGCGCGGCCGCGCTGACACAGGCGCAGGCCGAGGCG‑TTGCTCGAGGTCGTTCATCTGCTGGCTGATGGCCGAGCGACCAATGCCCAGTACGTTTTCGGCAGCCgag                                                                   >  2:171651/1‑148 (MQ=255)                                                                     aaTGGTAGACCTCGCGGCCTTCCTCCGTCAGCGAGAAACCGGCGCGGCCGCGCTGACACAGGCGCAGGCCGAGGCG‑TTGCTCGAGGTCGTTCATCTGCTGGCTGATGGCCGAGCGACCAATGCCCAGTACGTTTTCGGCAGCCGAGaa                                                                 <  4:255947/148‑1 (MQ=255)                                                                     aaTGGTAGACCTCGCGGCCTTCCTCCGTCAGCGAGAAACCGGCGCGGCCGCGCTGACACAGGCGCAGGCCGAGGCG‑TTGCTCGAGGTCGTTCATCTGCTGGCTGATGGCCGAGCGACCAATGCCCAGTACGTTTTCGGCAGCCGAGaa                                                                 <  1:209431/148‑1 (MQ=255)                                                                         gTAGACCTCGCGGCCTTCCTCCGTCAGCGAGAAACCGGCGCGGCCGCGCTGACACAGGCGCAGGCCGAGGCG‑TTGCTCGAGGTCGTTCATCTGCTGGCTGATGGCCGAGCGACCAATGCCCAGTACGTTTTCGGCAGCCGAGAAGCCAc                                                            >  5:122308/1‑149 (MQ=255)                                                                          tAGACCTCGCGGCCTTCCTCCGTCAGCGAGAAACCGGCGCGGCCGCGCTGACACAGGCGCAGGCCGAGGCG‑TTGCTCGAGGTCGTTCATCTGCTGGCTGATGGCCGAGCGACCAATGCCCAGTACGTTTTc                                                                             <  4:166057/131‑1 (MQ=255)                                                                          tAGACCTCGCGGCCTTCCTCCGTCAGCGAGAAACCGGCGCGGCCGCGCTGACACAGGCGCAGGCCGAGGCG‑TTGCTCGAGGTCGTTCATCTGCTGGCTGATGGCCGAGCGACCAATGCCCAGTACGTTTTc                                                                             >  3:166057/1‑131 (MQ=255)                                                                            GACCTCGCGGCCTTCCTCCGTCAGCGAGAAACCGGCGCGGCCGCGCTGACACAGGCGCAGGCCGAGGCG‑TTGCTCGAGGTCGTTCATCTGCTGGCTGATGGCCGAGCGACCAATGCCCAGTACGTTTTCGGCAGCCGAGAAGCCACCg                                                          >  1:165603‑M1/1‑148 (MQ=255)                                                                               CTCGCGGCCTTCCTCCGTCAGCGAGAAACCGGCGCGGCCGCGCTGACACAGGCGCAGGCCGAGGCG‑TTGCTCGAGGTCGTTCATCTGCTGGCTGATGGCCGAGCGACCAATGCCCAGTACGTTTTCGGCAGCCGAGAAGCCACCGCACt                                                      <  4:276615‑M1/149‑1 (MQ=255)                                                                                        ttCCTCCGTCAGCGAGAAACCGGCGCGGCCGCGCTGACACAGGCGCAGGCCGAGGCG‑TTGCTCGAGGTCGTTCATCTGCTGGCTGATGGCCGAGCGACCAATGCCCAGTACGTTTTCGGCAGCCGAGAAGCCACCGCACTCGACGACGc                                             >  2:194935/1‑149 (MQ=255)                                                                                              cGTCAGCGAGAAACCGGCGCGGCCGCGCTGACACAGGCGCAGGCCGAGGCG‑TTGCTCGAGGTCGTTCATCTGCTGGCTGATGGCCGAGCGACCAATGCCCAGTACGTTTTCGGCAGCCGAGAAGCCACCGCACTCGACGACGCTGCGa                                        <  3:276615/148‑1 (MQ=255)                                                                                               gTCAGCGAGAAACCGGCGCGGCCGCGCTGACACAGGCGCAGGCCGAGGCG‑TTGctcgctgacggaggaaggccgcgaggtctaccattcagccctgcaactgctcagcgcgctggaaaccttccgcaccgaggtcaacggcctgcacca                                      <  8:302693‑M2/149‑97 (MQ=255)                                                                                               gTCAGCGAGAAACCGGCGCGGCCGCGCTGACACAGGCGCAGGCCGAGGCG‑TTGCTCGAGGTCGTTCATCTGCTGGCTGATGGCCGAGCGACCAATGCCCAGTACGTTTTCGGCAGCCGAGAAGCCACCGCACTCGACGACGCTGCGATa                                      <  1:171651/149‑1 (MQ=255)                                                                                                tCAGCGAGAAACCGGCGCGGCCGCGCTGACACAGGCGCAGGCCGAGGCG‑TTGctcgctgacggaggaaggccgcgaggtctaccattcagccctgcaactgctcagcgcgctggaaaccttccgcaccgaggtcaacggcctgcaccag                                     <  3:154626‑M2/149‑98 (MQ=255)                                                                                                   gCGAGAAACCGGCGCGGCCGCGCTGACACAGGCGCAGGCCGAGGCG‑TTGCTCGAGGTCGTTCATCTGCTGGCTGATGGCCGAGCGACCAATGccc                                                                                        <  7:216945/95‑1 (MQ=255)                                                                                                   gCGAGAAACCGGCGCGGCCGCGCTGACACAGGCGCAGGCCGAGGCG‑TTGCTCGAGGTCGTTCATCTGCTGGCTGATGGCCGAGCGACCAATGccc                                                                                        >  8:216945/1‑95 (MQ=255)                                                                                                         aaCCGGCGCGGCCGCGCTGACACAGGCGCAGGCCGAGGCG‑TTGctcgctgacggaggaaggccgcgaggtctaccattcagccctgcaactgctcagcgcgctggaaaccttccgcaccgaggtcaacggcctgcaccagcatttgcgc                            >  4:154626‑M2/1‑43 (MQ=255)                                                                                                          aCCGGCGCGGCCGCGCTGACACAGGCGCAGGCCGAGGCG‑TTGCTCGAGGTCGTTCATCTGCTGGCTGAt                                                                                                           <  2:25177/69‑1 (MQ=255)                                                                                                          aCCGGCGCGGCCGCGCTGACACAGGCGCAGGCCGAGGCG‑TTGCTCGAGGTCGTTCATCTGCTGGCTGAt                                                                                                           >  1:25177/1‑69 (MQ=255)                                                                                                             ggCGCGGCCGCGCTGACACAGGCGCAGGCCGAGGCGGTTTctcgctgacggaggaaggccgcgagctctaccattcagccctgcaactgctcagcgcgctggaaaccttccgcaccgaggtcaacggcctgcaccagcatttgcgcggc                         <  7:232521‑M2/149‑110 (MQ=255)                                                                                                              gcgcGGCCGCGCTGACACAGGCGCAGGCCGAGGCG‑TTGCTCGAGGTCGTTCATCTGCTGGCTGATGGCCGAGCGACCAATGCCCAGTACGTTTTCGGCAGCCGAGAAGCCACCGCACTCGACAACGCTGCGATAGATCTTCAGCAGGCg                       <  6:122308/149‑1 (MQ=255)                                                                                                                    ccGCGCTGACACAGGCGCAGGCCGAGGCG‑TTGCTCGAGGTCGTTCATCTGCTGGCTGATGGCCGAGCGACCAATGCCCAGTACGTTTTCGGCAGCCGAGAAGCCACCGCACTCGACGACGCTGCGATAGATCTTCAGCAGGCGGATGTc                 >  4:230295/1‑149 (MQ=255)                                                                                                                        gcTGACACAGGCGCAGGCCGAGGCG‑TTGCTCGAGGTCGTTCATCTGCTGGCTGATGGCCGAGCGACCAATGCCCAGTACGTTTTCGGCAGCCGAGAAGCCACCGCACTCGACGACGCTGCGATAGATCTTCAGCAGGCGGATGTCGaat             >  1:281611/1‑148 (MQ=255)                                                                                                                            acacAGGCGCAGGCCGAGGCG‑TTGCTCGAGGTCGTTCATCTGCAGGCTGATGGCCGAGCGACCAATGCCCAGTACGTTTTCGGCAGCCGAGAAGCCACCGCACTCGACGACGCTCCGATAGATCTTCAGCAGGCTGATGTCGAAATCGc         >  5:133326/1‑149 (MQ=255)                                                                                                                             cacaGGCGCAGGCCGAGGCG‑TTGCTCGAGGTCGTTCATCTGCTGGCTGATGGCCGAGCGACCAATGCCCAGTACGTTTTCGGCAGCCGAGAAGCCACCGCACTCGACGACGCTGCGATAGATCTTCAGCAGGCGGATGTCGAAATCGCt        <  3:42940/149‑1 (MQ=255)                                                                                                                                aGGCGCAGGCCGAGGCG‑TTGCTCGAGGTCGTTCATCTGCTGGCTGATGGCCGAGCGACCAATGCCCAGTACGTTTTCGGCAGCCGAGAAGCCACCGCACTCGACGACGCTGCGATAGATCTTCAGCAGGCGGATGTCGAAATCGCTGAc     >  5:170735/1‑149 (MQ=255)                                                                                                                                    gcAGGCCGAGGCG‑TTGCTCGAGGTCGTTCATCTGCTGGCTGATGGCCGAGCGACCAATGCCCAGTACGTTTTCGGCAGCCGAGAAGCCACCGCACTCGACGACGCTGCGATAGATCTTCAGCAGGCGGATGTCGAAATCGCTGACTTg  >  7:3110/1‑148 (MQ=255)                                                                                                                                    gcAGGCCGAGGCG‑TTGCTCGAGGTCGTTCATCTGCTGGCTGATGGCCGAGCGACCAATGCCCAGTACGTTTTCGGCAGCCGAGAAGCCACCGCACTCGACGACGCTGCGATAGATCTTCAGCAGGCGGATGTCGAAATCGCTGACTTg  <  8:3110/148‑1 (MQ=255)                                                                                                                                                    |                                                                                                                                     CAAATGCTGGTGCAGGCCGTTGACCTCGGTGCGGAAGGTTTCCAGCGCGCTGAGCAGTTGCAGGGCTGAATGGTAGACCTCGCGGCCTTCCTCCGTCAGCGAGAAACCGGCGCGGCCGCGCTGACACAGGCGCAGGCCGAGGCG‑TTGCTCGAGGTCGTTCATCTGCTGGCTGATGGCCGAGCGACCAATGCCCAGTACGTTTTCGGCAGCCGAGAAGCCACCGCACTCGACGACGCTGCGATAGATCTTCAGCAGGCGGATGTCGAAATCGCTGACTTG  >  NC_002947/693736‑694014

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.