| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 693838 | 40 (0.770) | 4 (0.080) | 4/252 | NT | 9.7% | coding (204/918 nt) | PP_0595 | LysR family transcriptional regulator |
| ? | NC_002947 | = 693882 | 36 (0.720) | coding (160/918 nt) | PP_0595 | LysR family transcriptional regulator | |||||
TCACCAGGTTGTCGGTCAGGCCGATGTTCAGCTCGCCGCGCAAATGCTGGTGCAGGCCGTTGACCTCGGTGCGGAAGGTTTCCAGCGCGCTGAGCAGTTGCAGGGCTGAATGGTAGACCTCGCGGCCTTCCTCCGTCAGCGAGAAACCGGCGCGGCCGCGCTGACACAGGCGCAGGCCGAGGCGTTGCTCGAGGTCGTTCATCTGCTGGCTGATGGCCGAGCGACCAATGCCCAGTACGTTTTCGGCAGCCGAGAAGCCACCGCACTCGACGACGCTGCGATAG > NC_002947/693696‑693979 | tCACCAGGTTGTCGGTCAGGCCGATGTTCAGCTCGCCGCGCAAATGCTGGTGCAGGCCGTTGACCTCGGTGCGGAAGGTTTCCAGCGCGCTGAGCAGTTGCAGGGCTGAATGGTAGACCTCGCGGCCTTCCTCCGTCAGCGAGAAACCg > 2:318484/1‑149 (MQ=255) cACCAGGTTGTCGGTCAGGCCGATGTTCAGCTCGCCGCGCAAATGCTGGTGCAGGCCGTTGACCTCGGTGCGGAAGGTTTCCAGCGCGCTGAGCAGTTGCAGGGCTGAATGGTAGACCTCGCGGCCTTCCTCCGTCAGCGAGAAACCg > 4:223767/1‑148 (MQ=255) cACCAGGTTGTCGGTCAGGCCGATGTTCAGCTCGCCGCGCAAATGCTGGTGCAGGCCGTTGACCTCGGTGCGGAAGGTTTCCAGCGCGCTGAGCAGTTGCAGGGCTGAATGGTAGACCTCGCGGCCTTCCTCCGTCAGCGAGAAACCg < 3:223767/148‑1 (MQ=255) tcgacatccgcctgctgaagatctatcgcagcgtcgtcgagtgcggtggcttctcggctgccgaaaacgtactgggcattggtcgctcggccatcagccagcagatgaacGACCTCGCGGCCTTCCTCCGTCAGCGAGAAACCGGcgcg < 7:26615‑M1/39‑1 (MQ=255) gTCAGGCCGATGTTCAGCTCGCCGCGCAAATGCTGGTGCAGGCCGTTGACCTCGGTGCGGAAGGTTTCCAGCGCGCTGAGCAGTTGCAGGGCTGAATGGTAGACCTCGCGGCCTTCCTCCGTCAGCGAGAAACCGGCGCGGCCGCGCt > 7:54203/1‑148 (MQ=255) tCAGGCCGATGTTCAGCTCGCCGCGCAAATGCTGGTGCAGGCCGTTGACCTCGGTGCGGAAGGTTTCCAGCGCGCTGAGCAGTTGCAGGGCTGAATGGTAGACCTCGCGGCCTTCCTCCGTCAGCGAGAAACCGGCGCGGCCGCGCTGa < 3:80955/149‑1 (MQ=255) aGGCCGATGTTCAGCTCGCCGCGCAAATGCTGGTGCAGGCCGTTGACCTCGGTGCGGAAGGTTTCCAGCGCGCTGAGCAGTTGCAGGGCTGAATGGTAGACCTCGCGGCCTTCCTCCGTCAGCGAGAAACCGGCGCGGCCGCGCTGac < 5:315886/148‑1 (MQ=255) ccGATGTTCAGCTCGCCGCGCAAATGCTGGTGCAGGCCGTTGACCTCGGTGCGGAAGGTTTCCAGCGCGCTGAGCAGTTGCAGGGCTGAATGGTAGACCTCGCGGCCTTCCTCCGTCAGCGAGAAACCGGCGCGGCCGCGCTGACACAg < 4:170102/149‑1 (MQ=255) cgttGTTCAGCTCGCCGCGCAAATGCTGGTGCAGGCCGTTGACCTCGGTGCGGAAGGTTTCCAGGGCGGTGAGCAGTTGCAGGGCTGAATGGTAGACCTCGCGGCCTTCCTCCGTCAGCGAGAAACCGGCGCGGCCGCGCTGACACAgg < 2:270073/146‑1 (MQ=255) gccgcGCAAATGCTGGTGCAGGCCGTTGACCTCGGTGCGGAAGGTTTCCAGCGCGCTGAGCAGTTGCAGGGCTGAATGGTAGAGCTCGCGGCCTTCCTCCGTCAGCGAGaaaccgcctcggcctgcgcctgtgtcagcgcggccgcgcc < 7:232521‑M1/149‑41 (MQ=255) gccgcGCAAATGCTGGTGCAGGCCGTTGACCTCGGTGCGGAAGGTTTCCAGCGCGCTGAGCAGTTGCAGGGCTGAATGGTAGACCTCGCGGCCTTCCTCCGTCAGCGAGAAACCGGCGCGGCCGCGCTGACACAGGCGCAGGCCGAg < 3:297383/147‑1 (MQ=255) gcgcAAATGCTGGTGCAGGCCGTTGACCTCGGTGCGGAAGGTTTCCAGCGCGCTGAGCAGTTGCAGGGCTGAATGGTAGACCTCGCGGCCTTCCTCCGTCAGCGAGcaacgcctcggcctgcgcctgtgtcagcgcggccgcgccggtt > 4:154626‑M1/1‑106 (MQ=255) gcgcAAATGCTGGTGCAGGCCGTTGACCTCGGTGCGGAAGGTTTCCAGCGCGCTGAGCAGTTGCAGGGCTGAATGGTAGACCTCGCGGCCTTCCTCCGTCAGCGAGAAACCGGCGCGGCCGCGCTGACACAGGCGCAGGCCGAgg < 7:186018/145‑1 (MQ=255) gcgcAAATGCTGGTGCAGGCCGTTGACCTCGGTGCGGAAGGTTTCCAGCGCGCTGAGCAGTTGCAGGGCTGAATGGTAGACCTCGCGGCCTTCCTCCGTCAGCGAGAAACCGGCGCGGCCGCGCTGACACAGGCGCAGGCCGAgg > 8:186018/1‑145 (MQ=255) gtcgagtgcggtggcttctcggctgccgaaaacgtactgggcattggtcgctcggccatcagccagcagatgaacGACCTCGCGGCCTTCCTCCGTCAGCGAGAAACCGGCGCGGCCGCGCTGACACAGGCGCAGGCCGAGGCGTTGCt < 5:91793‑M1/74‑1 (MQ=255) aaaTGCTGGTGCAGGCCGTTGACCTCGGTGCGGAAGGTTTCCAGCGCGCTGAGCAGTTGCAGGGCTGAATGGTAGACCTCGCGGCCTTCCTCCGTCAGCGAGAAACCGGCGCGGCCGCGCTGAcaca < 7:286889/127‑1 (MQ=255) aaaTGCTGGTGCAGGCCGTTGACCTCGGTGCGGAAGGTTTCCAGCGCGCTGAGCAGTTGCAGGGCTGAATGGTAGACCTCGCGGCCTTCCTCCGTCAGCGAGAAACCGGCGCGGCCGCGCTGAcaca > 8:286889/1‑127 (MQ=255) cTGGTGCAGGCCGTTGACCTCGGTGCGGAAGGTTTCCAGCGCGCTGAGCAGTTGCAGGGCTGAATGGTAGACCTCGCGGCCTTCCTCCGTCAGCGAGcaacgcctcggcctgcgcctgtgtcagcgcggccgcgccggtttctcgctga < 3:154626‑M1/149‑53 (MQ=255) tGGTGCAGGCCGTTGACCTCGGTGCGGAAGGTTTCCAGCGCGCTGAGCAGTTGCAGGGCTGAATGGTAGACCTCGCGGCCTTCCTCCGTCAGCGAGcaacgcctcggcctgcgcctgtgtcagcgcggccgcgccggtttctcgctgac < 8:302693‑M1/149‑54 (MQ=255) tGGTGCAGGCCGTTGACCTCGGTGCGGAAGGTTTCCAGCGCGCTGAGCAGTTGCAGGGCTGAATGGTAGACCTCGCGGCCTTCCTCCGTCAGCGAGAAACCGGCGCGGCCGCGCTGACAC‑‑GCGCAGGCCGa < 5:300978/131‑1 (MQ=255) tGGTGCAGGCCGTTGACCTCGGTGCGGAAGGTTTCCAGCGCGCTGAGCAGTTGCAGGGCTGAATGGTAGACCTCGCGGCCTTCCTCCGTCAGCGAGAAACCGGCGCGGCCGCGCTGACAC‑‑GCGCAGGCCGa > 6:300978/1‑131 (MQ=255) tGGTGCAGGCCGTTGACCTCGGTGCGGAAGGTTTCCAGCGCGCTGAGCAGTTGCAGGGCTGAATGGTAGACCTCGCGGCCTCCCTCCGTCAGCGAGAAACCGGCGCGGCCGCGCTGACACAGGCGCAGGCCGAGGCGTTGCTCGAgggc > 2:266950/1‑147 (MQ=255) ggtggcttctcggctgccgaaaacgtactgggcattggtcgctcggccatcagccagcagatgaacGACCTCGCGGCCTTCCTCCGTCAGCGAGAAACCGGCGCGGCCGCGCTGACACAGGCGCAGGCCGAGGCGTTGCTCGAGGTCGt > 6:91793‑M1/67‑149 (MQ=255) gTGCAGGCCGTTGACCTCGGTGCGGAAGGTTTCCAGCGCGCTGAGCAGTTGCAGGGCTGAATGGTAGACCTCGCGGCCTTCCTCCGTCAGCGAGAAACCGGCGCGGCCGCGCTGACACAGGCGCAGGCCGAGGCGTTGCTCGAGGTCga > 5:65843/1‑148 (MQ=255) tggcttctcggctgccgaaaacgtactgggcattggtcgctcggccatcagccagcagatgaacGACCTCGCGGCCTTCCTCCGTCAGCGAGAAACCGGCGCGGCCGCGCTGACACAGGCTCAGGCCGAGGCGTTGCTCGAGGTCGTTc > 8:26615‑M1/65‑149 (MQ=255) gCAGGCCGTTGACCTCGGTGCGGAAGGTTTCCAGCGCGCTGAGCAGTTGCAGGGCTGAATGGTAGACCTCGCGGCCTTCCTCCGTCAGCGAGAAACCGGCGCGGCCGCGCTGACACAGGCGCAGGCCGAGGCGTTGCTCGAGGTCGtt > 5:168340/1‑148 (MQ=255) ggCCGTTGACCTCGGTGCGGAAGGTTTCCAGCGCGCTGAGCAGTTGCAGGGCTGAATGGTAGACCTCGCGGCCTTCCTCCGTCAGCGAGAAACCGGCGCGGCCGCGCTGACACAGGCGCAGGCCGAGGCGTTGc > 7:233724‑M2/1‑133 (MQ=255) ggCCGTTGACCTCGGTGCGGAAGGTTTCCAGCGCGCTGAGCAGTTGCAGGGCTGAATGGTAGACCTCGCGGCCTTCCTCCGTCAGCGAGAAACCGGCGCGGCCGCGCTGACACAGGCGCAGGCCGAGGCGTTGc < 8:233724‑M2/134‑2 (MQ=255) gACCTCGGTGCGGAAGGTTTCCAGCGCGCTGAGCAGTTGCAGGGCTGAATGGTAGACCTCGCGGCCTTCCTCCGTCAGCGAGAAACCGGCGCGGCCGCGCTGACACAGGCGCAGGCCGAGGCGTTGCTCGAGGTCGTTCATCTgctggc > 5:165265/1‑149 (MQ=255) aCCTCGGTGCTGAAGGTTTCCAGCGCGCTGAGCAGTTGCAGGGCTGAATGGTAGACCTCGCGGCCTTCCTCCGTCAGCGAGAAACCGGCGCGGCCGCGCTGACACAGGCGCAGGCCGAGGCGTTGCTCGAGGTCGTTCATCTgctggc < 8:54203/148‑1 (MQ=255) cTCGGTGCGGAAGGTTTCCAGCGCGCTGAGCAGTTGCAGGGCTGAATGGTAGACCTCGCGGCCTTCCTCCGTCAGCGAGAAACCGGCGCGGCCGCGCTGACACAGGCGCAGGCCGAGGCGTTGCTCGAGGTCGTTCATCTGCTGGCTGa > 2:165603/1‑149 (MQ=255) tCGGTGCGTAAGGTTTCCAGCGCGCTGAGCAGTTGCAGGGTTGAATGGTAGACCTCTGGGCATTCCTGCGTCTGCGATAAACCGGCTAGGCCGCGTTGACACTGGCGCAGGCAGAGGCGTTGCTCGAGGTCGTTAATCTGCTGGCTTAt < 2:14450/149‑1 (MQ=255) ggAAGGTTTCCAGCGCGCTGAGCAGTTGCAGGGCTGAATGGTAGACCTCGCGGCCTTCCTCCGTCAGCGAGAAACCGGCGCGGCCGCGCTGACACAGGCGCAGGCCGAGGCGTTGCTCGAGGTCGTTCATCTGCTGGCTGATGGCCGAg > 1:38213/1‑149 (MQ=255) ggAAGGTTTCCAGCGCGCTGAGCAGTTGCAGGGCTGAATGGTAGACCTCGCGGCCTTCCTCCGTCAGCGAGAAACCGGCGCGGCCGCGCTGACACAGGCGCAGGCCGAGGCGTTGCTCGAGGTCGTTCATCTGCTGGCTGATGGCCGAg > 3:255947/1‑149 (MQ=255) gAAGGTTTCCAGCGCGCTGAGCAGTTGCAGGGCTGAATGGTAGACCTCGCGGCCTTCCTCCGTCAGCGAGAAACCGGCGCGGCCGCGCTGACACAGGCGCAGGCCGAGGCGTTGCTCGAGGTCGTTCATCTGCTGGCTGATGGCCGAGc > 1:227699/1‑149 (MQ=255) ggTTTCCAGCGCGCTGAGCAGTTGCAGGGCTGAATGGTAGACCTCGCGGCCTTCCTCCGTCAGCGAGAAACCGGCGCGGCCGCGCTGACACAGGCGCAGGCCGAGGCGTTGCTCGAGGTCGTTCATCTGCTGGCTGATGGCCGAGCGAc > 1:117362/1‑149 (MQ=255) aGTTGCAGGGCTGAATGGTAGACCTCGCGGCCTTCCTCCGTCAGCGAGAAACCGGCGCGGCCGCGCTGACACAGGCGCAGGCCGAGGCGTTGCTCGAGGTCGTTCATCTGCTGGCTGATGGCCGAGCGACCAATGCCCAGTACGTTTTc < 6:65843/149‑1 (MQ=255) aGTTGCAGGGCTGAATGGTAGACCTCGCGGCCTTCCTCCGTCAGCGAGAAACCGGCGCGGCCGCGCTGACACAGGCGCAGGCCGAGGCGTTGCTCGAGGTCGTTCATCTGCTGGCTGATGGCCGAGCGACCAATGCCCAGTACGTTTTc < 3:241621/149‑1 (MQ=255) gTTGCAGGGCTGAATGGTAGACCTCGCGGCCTTCCTCCGTCAGCGAGAAACCGGCGCGGCCGCGCTGACACAGGCGCAGGCCGAGGCGTTGCTCGAGGTCGTTCATCTGCTGGCTGATGGCCGAGCGACCAATGCCCAGTACGTTTTCg < 1:318484/149‑1 (MQ=255) aGGGCTGAATGGTAGACCTCGCGGCCTTCCTCCGTCAGCGAGAAACCGGCGCGGCCGCGCTGACACAGGCGCAGGCCGAGGCGTTGCTCGAGGTCGTTCATCTGCTGGCTGATGGCCGAGCGACCAATGCCCAGTACGTTTTCGGCAGc < 6:168340/149‑1 (MQ=255) gggCTGAATGGTAGACCTCGCGGCCTTCCTCCGTCAGCGAGAAACCGGCGCGGCCGCGCTGACACAGGCGCAGGCCGAGGCGTTGCTCGAGGTCGTTCATCTGCTGGCTGATGGCCGAGCGACCAATGCCCAGTACGTTTTCGGCAGcc > 4:42940/1‑149 (MQ=255) tGAATGGTAGACCTCGCGGCCTTCCTCCGTCAGCGAGAAACCGGCGCGGCCGCGCTGACACAGGCGCAGGCCGAGGCGTTGCTCGAGGTCGTTCATCTGCTGGCTGATGGCCGAGCGACCAATGCCCAGTACGTTTTCGGCAGCCgag > 2:171651/1‑148 (MQ=255) aaTGGTAGACCTCGCGGCCTTCCTCCGTCAGCGAGAAACCGGCGCGGCCGCGCTGACACAGGCGCAGGCCGAGGCGTTGCTCGAGGTCGTTCATCTGCTGGCTGATGGCCGAGCGACCAATGCCCAGTACGTTTTCGGCAGCCGAGaa < 4:255947/148‑1 (MQ=255) aaTGGTAGACCTCGCGGCCTTCCTCCGTCAGCGAGAAACCGGCGCGGCCGCGCTGACACAGGCGCAGGCCGAGGCGTTGCTCGAGGTCGTTCATCTGCTGGCTGATGGCCGAGCGACCAATGCCCAGTACGTTTTCGGCAGCCGAGaa < 1:209431/148‑1 (MQ=255) gTAGACCTCGCGGCCTTCCTCCGTCAGCGAGAAACCGGCGCGGCCGCGCTGACACAGGCGCAGGCCGAGGCGTTGCTCGAGGTCGTTCATCTGCTGGCTGATGGCCGAGCGACCAATGCCCAGTACGTTTTCGGCAGCCGAGAAGCCAc > 5:122308/1‑149 (MQ=255) tAGACCTCGCGGCCTTCCTCCGTCAGCGAGAAACCGGCGCGGCCGCGCTGACACAGGCGCAGGCCGAGGCGTTGCTCGAGGTCGTTCATCTGCTGGCTGATGGCCGAGCGACCAATGCCCAGTACGTTTTc < 4:166057/131‑1 (MQ=255) tAGACCTCGCGGCCTTCCTCCGTCAGCGAGAAACCGGCGCGGCCGCGCTGACACAGGCGCAGGCCGAGGCGTTGCTCGAGGTCGTTCATCTGCTGGCTGATGGCCGAGCGACCAATGCCCAGTACGTTTTc > 3:166057/1‑131 (MQ=255) GACCTCGCGGCCTTCCTCCGTCAGCGAGAAACCGGCGCGGCCGCGCTGACACAGGCGCAGGCCGAGGCGTTGCTCGAGGTCGTTCATCTGCTGGCTGATGGCCGAGCGACCAATGCCCAGTACGTTTTCGGCAGCCGAGAAGCCACCg > 1:165603‑M1/1‑148 (MQ=255) CTCGCGGCCTTCCTCCGTCAGCGAGAAACCGGCGCGGCCGCGCTGACACAg < 7:79047‑M1/51‑1 (MQ=255) CTCGCGGCCTTCCTCCGTCAGCGAGAAACCGGCGCGGCCGCGCTGACACAg > 8:79047‑M1/1‑51 (MQ=255) CTCGCGGCCTTCCTCCGTCAGCGAGAAACCGGCGCGGCCGCGCTGACACAGGCGCAGGCCGAGGCGTTGCTCGAGGTCGTTCATCTGCTGGCTGATGGCCGAGCGACCAATGCCCAGTACGTTTTCGGCAGCCGAGAAGCCACCGCACt < 4:276615‑M1/149‑1 (MQ=255) ttCCTCCGTCAGCGAGAAACCGGCGCGGCCGCGCTGACACAGGCGCAGGCCGAGGCGTTGCTCGAGGTCGTTCATCTGCTGGCTGATGGCCGAGCGACCAATGCCCAGTACGTTTTCGGCAGCCGAGAAGCCACCGCACTCGACGACGc > 2:194935/1‑149 (MQ=255) cGTCAGCGAGAAACCGGCGCGGCCGCGCTGACACAGGCGCAGGCCGAGGCGTTGCTCGAGGTCGTTCATCTGCTGGCTGATGGCCGAGCGACCAATGCCCAGTACGTTTTCGGCAGCCGAGAAGCCACCGCACTCGACGACGCTGCGa < 3:276615/148‑1 (MQ=255) gTCAGCGAGAAACCGGCGCGGCCGCGCTGACACAGGCGCAGGCCGAGGCGTTGctcgctgacggaggaaggccgcgaggtctaccattcagccctgcaactgctcagcgcgctggaaaccttccgcaccgaggtcaacggcctgcacca < 8:302693‑M2/149‑97 (MQ=255) gTCAGCGAGAAACCGGCGCGGCCGCGCTGACACAGGCGCAGGCCGAGGCGTTGCTCGAGGTCGTTCATCTGCTGGCTGATGGCCGAGCGACCAATGCCCAGTACGTTTTCGGCAGCCGAGAAGCCACCGCACTCGACGACGCTGCGATa < 1:171651/149‑1 (MQ=255) tCAGCGAGAAACCGGCGCGGCCGCGCTGACACAGGCGCAGGCCGAGGCGTTGctcgctgacggaggaaggccgcgaggtctaccattcagccctgcaactgctcagcgcgctggaaaccttccgcaccgaggtcaacggcctgcaccag < 3:154626‑M2/149‑98 (MQ=255) gCGAGAAACCGGCGCGGCCGCGCTGACACAGGCGCAGGCCGAGGCGTTGCTCGAGGTCGTTCATCTGCTGGCTGATGGCCGAGCGACCAATGccc < 7:216945/95‑1 (MQ=255) gCGAGAAACCGGCGCGGCCGCGCTGACACAGGCGCAGGCCGAGGCGTTGCTCGAGGTCGTTCATCTGCTGGCTGATGGCCGAGCGACCAATGccc > 8:216945/1‑95 (MQ=255) gcaacgcctcggcctgcgcctgtgtcagcgcggccgcgccggtttctcgctgacggaggaaggccgcgaggtctaccattcagccctgcaactgctcagcgcgctggaaaccttccgcaccgaggtcaacggcc > 7:233724‑M1/1‑1 (MQ=255) gcaacgcctcggcctgcgcctgtgtcagcgcggccgcgccggtttctcgctgacggaggaaggccgcgaggtctaccattcagccctgcaactgctcagcgcgctggaaaccttccgcaccgaggtcaacggcc < 8:233724‑M1/134‑134 (MQ=255) | TCACCAGGTTGTCGGTCAGGCCGATGTTCAGCTCGCCGCGCAAATGCTGGTGCAGGCCGTTGACCTCGGTGCGGAAGGTTTCCAGCGCGCTGAGCAGTTGCAGGGCTGAATGGTAGACCTCGCGGCCTTCCTCCGTCAGCGAGAAACCGGCGCGGCCGCGCTGACACAGGCGCAGGCCGAGGCGTTGCTCGAGGTCGTTCATCTGCTGGCTGATGGCCGAGCGACCAATGCCCAGTACGTTTTCGGCAGCCGAGAAGCCACCGCACTCGACGACGCTGCGATAG > NC_002947/693696‑693979 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |