| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 832534 | 45 (0.870) | 3 (0.060) | 3/244 | NT | 6.5% | coding (297/1098 nt) | PP_0716 | HlyD family secretion protein |
| ? | NC_002947 | = 832564 | 44 (0.910) | coding (327/1098 nt) | PP_0716 | HlyD family secretion protein | |||||
CGTAGTCCCGGTGGCCGCCGAAGTGGCCGGGCAGATCAAGCGTGTGGCCGTAGGCAACAACCAGGAGGTGCGCCAGGGCGATGTGCTGTTCGAACTCGATCAGGAGCAGTACCGCATTGCCTTGGCCCGTGCCGAAGCCGACCTCGATACC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/832384‑832534‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tcgataccAGCGGTACTGGCGCCGATCTGCCGCCGCACGGTATCGAGGTCGGCTTCGGCACGGGCCAAGGCAATGCGGTACTGCTCCTGATCGAGTTCGAACAGCACATCGCCCTGGCGCACCTCCTGGTTGTTGCCTACGGCCACACGCTTGAT < NC_002947/832564‑832418 CGTAGTCCCGGTGGCCGCCGAAGTGGCCGGGCAGATCAAGCGTGTGGCCGTAGGCAACAACCAGGAGGTGCGCCAGGGCGATGTGCTGTTCGAACTCGATCAGGAGCAGTACCGCATTGCCTTGGCCCGTGCCGAAGCCGACCTCGATA < 3:303717/149‑1 AAGCGTGTGGCCGTAGGCAACAACCAGGAGGTGCGCCAGGGCGATGTGCTGTTCGAACTCGATCAGGAGCAGTACCGCATTGCCTTGGCCCGTGCCGAAGCCGACCTCGATACCAGCGGTACTGGCGCCGATCTGCCGCCGCACGGT < 7:77790/147‑1 AAGCGTGTGGCCGTAGGCAACAACCAGGAGGTGCGCCAGGGCGATGTGCTGTTCGAACTCGATCAGGAGCAGTACCGCATTGCCTTGGCCCGTGCCGAAGCCGACCTCGATACCAGCGGTACTGGCGCCGATCTGCCGCCGCACGGT > 8:77790/1‑147 GTGTGGCCGTAGGCAACAACCAGGAGGTGCGCCAGGGCGATGTGCTGTTCGAACTCGATCAGGAGCAGTACCGCATTGCCTTGGCCCGTGCCGAAGCCGACCTCGATACCAGCGGTACTGGCGCCGATCTGCCGCCGCACGGTATCGAG < 1:80992/149‑1 CCAGCGGTACTGGCGCCGATCTGCCGCCGCACGGTATCGAGGTCGGCTTCGGCACGGGCCAAGGCAATGCGGTACTGCTCCTGATCGAGTTCGAACAGCACATCGCCCTGGCGCACCTCCTGGTTGTTGCCTACGGCCACACGCTTGAT > 3:258036/1‑149 CGTAGTCCCGGTGGCCGCCGAAGTGGCCGGGCAGATCAAGCGTGTGGCCGTAGGCAACAACCAGGAGGTGCGCCAGGGCGATGTGCTGTTCGAACTCGATCAGGAGCAGTACCGCATTGCCTTGGCCCGTGCCGAAGCCGACCTCGATACC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/832384‑832534‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tcgataccAGCGGTACTGGCGCCGATCTGCCGCCGCACGGTATCGAGGTCGGCTTCGGCACGGGCCAAGGCAATGCGGTACTGCTCCTGATCGAGTTCGAACAGCACATCGCCCTGGCGCACCTCCTGGTTGTTGCCTACGGCCACACGCTTGAT < NC_002947/832564‑832418 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |