New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 832534	45 (0.870)	3 (0.060)	3/244	NT	6.5%	coding (297/1098 nt)	PP_0716	HlyD family secretion protein
	?	NC_002947	= 832564	44 (0.910)					coding (327/1098 nt)	PP_0716	HlyD family secretion protein

ATCAAGCGTGTGGCCGTAGGCAACAACCAGGAGGTGCGCCAGGGCGATGTGCTGTTCGAACTCGATCAGGAGCAGTACCGCATTGCCTTGGCCCGTGCCGAAGCCGACCTCGATACCGTGCGGCGGCAGATCGGCGCCAGTACCGCTGGTATCGATTCGGCGCAAGCAGCGCTGGTGGCCGCCCAGGCCAACGAACGCAAGGCGCGGCAGGACGCCGAGCGCCTCAAACGGCTGATTGACGAAGACCCCGGTACGGTGTCGGTGCGCCGTCTGGAAGGCGCCCAGGCCA  >  NC_002947/832418‑832706                                                                                                                                                   |                                                                                                                                               aTCAAGCGTGTGGCCGTAGGCAACAACCAGGAGGTGCGCCAGGGCGATGTGCTGTTCGAACTCGATCAGGAGCAGTACCGCATTGCCTTGGCCCGTGCCGAAGCCGACCTCGATACCGTGCGGCGGCAGATCGGCGCCAGTACCGCTgg                                                                                                                                              >  3:258036‑M2/1‑147 (MQ=255)              ccGTAGGCAACAACCAGGAGGTGCGCCAGGGCGATGTGCTGTTCGAACTCGATCAGGAGCAGTACCGCATTGCCTTGGCCCGTGCCGAAGCCGACCTCGATACCGTGCGGCGGCAGATCGGCGCCAGTACCGCTGGTATCGATTCGgcg                                                                                                                                 >  6:94245/1‑149 (MQ=255)                      aacaacCAGGAGGTGCGCCAGGGCGATGTGCTGTTCGAACTCGATCAGGAGCAGTACCGCATTGCCTTGGCCCGTGCCGAAGCCGACCTCGATACCGTGCGGCGGCAGATCGGCGCCAGTACCGCt                                                                                                                                                >  1:176741/1‑126 (MQ=255)                      aacaacCAGGAGGTGCGCCAGGGCGATGTGCTGTTCGAACTCGATCAGGAGCAGTACCGCATTGCCTTGGCCCGTGCCGAAGCCGACCTCGATACCGTGCGGCGGCAGATCGGCGCCAGTACCGCt                                                                                                                                                <  2:176741/126‑1 (MQ=255)                      aacaacCAGGAGGTGCGCCAGGGCGATGTGCTGTTCGAACTCGATCAGGAGCAGTACCGCATTGCCTTGGCCCGTGCCGAAGCCGACCTCGATACCGTGCGGCGGCAGATCGGCGCCAGTACCGCTGGTATCGATTCGGCGCAagcagc                                                                                                                         >  6:253169/1‑149 (MQ=255)                         aacCAGGATGTGCGCCAGGGCGATGTGCTGTTCGAACTCGATCAGGAGCAGTACCGCATTGCCTTGGCCCGTGCCGAAGCCGACCTCGATACCGTGCGGCGGCAGATCGGCGCCAGTACCGCTGGTATCGATTCGGCGCAAGCAGCGCt                                                                                                                      <  4:181534/149‑1 (MQ=255)                          acCAGGAGGTGCGCCAGGGCGATGTGCTGTTCGAACTCGATCAGGAGCAGTACCGCATTGCCTTGGCCCGTGCCGAAGCCGACCTCGATACCGTGCGGCGGCAGATCGGCGCCAGTACCGCTGGTATCGATTCGGCGCAAGCAGCGCtg                                                                                                                     <  1:136582/149‑1 (MQ=255)                            cAGGAGGTGCGCCAGGGCGATGTGCTGTTCGAACTCGATCAGGAGCAGTACCGCATTGCCTTGGCCCGTGCCGAAGCCGACCTCGATACCGTGCGGCGGCAGATCGGCGCCAGTACCGCTGGTATCGATTCGGCGCAAGCAGCGCtggt                                                                                                                   >  3:72939/1‑149 (MQ=255)                             aggaggTGCGCCAGGGCGATGTGCTGTTCGAACTCGATCAGGAGCAGTACCGCATTGCCTTGGCCCGTGCCGAAGCCGACCTCGATACCGTGCGGCGGCAGATCGGCGCCAGTACCGCTGGTATCGATTCGGCGCAAGCAGCGCtggtg                                                                                                                  <  2:286477/149‑1 (MQ=255)                              ggaggTGCGCCAGGGCGATGTGCTGTTCGAACTCGATCAGGAGCAGTACCGCATTGCCTTGGCCCGTGCCGAAGCCGACCTCGATACCGTGCGGCGGCAGATCGGCGCCAGTACCGCTGGTATCGATTCGGCGCAAGCAGCGCtggtgg                                                                                                                 >  7:188540/1‑149 (MQ=255)                                 ggTGCGCCAGGGCGATGTGCTGTTCGAACTCGATCAGGAGCAGTACCGCATTGCCTTGGCCCGTGCCGAAGCCGACCTCGATACCGTGCGGCGGCAGATCGGCGCCAGTACCGCTGGTATCGATTCGGCGCAAGCAGCGCtggtgg                                                                                                                 >  4:11136/1‑146 (MQ=255)                                 ggTGCGCCAGGGCGATGTGCTGTTCGAACTCGATCAGGAGCAGTACCGCATTGCCTTGGCCCGTGCCGAAGCCGACCTCGATACCGTGCGGCGGCAGATCGGCGCCAGTACCGCTGGTATCGATTCGGCGCAAGCAGCGCtggtgg                                                                                                                 <  3:11136/146‑1 (MQ=255)                                       ccAGGGCGATGTGCTGTTCGAACTCGATCAGGAGCAGTACCGCATTGCCTTGGCCCGTGCCGAAGCCGACCTCGATACCGTGCGGCGGCAGATCGGCGCCAGTACCGCTGGTATCGATTCGGCGCAAGCAGCGCTGGTGGCCGCCCAgg                                                                                                        <  4:72939/149‑1 (MQ=255)                                        cAGGGCGATGTGCTGTTCGAACTCGATCAGGAGCAGTACCGCATTGCCTTGGCCCGTGCCGAAGCCGACCTCGATACCGTGCGGCGGCAGATCGGCGCCAGTACCGCTGGTATCGATTCGGCGCAAGCAGCGCTGGTGGCCGCCCAGGc                                                                                                       >  3:307726/1‑149 (MQ=255)                                            gCGATGTGCTGTTCGAACTCGATCAGGAGCAGTACCGCATTGCCTTGGCCCGTGCCGAAGCCGACCTCGATACCGTGCGGCGGCAGATCGGCGCCAGTACCGCTGGTATCGATTCGGCGCAAGCAGCGCTGGTGGCCGCACAGGCCaac                                                                                                   <  8:188540/149‑1 (MQ=255)                                                tgtgCTGTTCGAACTCGATCAGGAGCAGTACCGCATTGCCTTGGCCCGTGCCGAAGCCGACCTCGATACCGTGCGGCGGCAGATCGGCGCCAGTACCGCTGGTATCGATTCGGCGCAAGCAGCGCTGGTGGCCGCCCAGGCCaacgaac                                                                                               >  6:111441/1‑149 (MQ=255)                                                       ttCGAACTCGATCAGGAGCAGTACCGCATTGCCTTGGCCCGTGCCGAAGCCGACCTCGATACCGTGCGGCGGCAGATCGGCGCCAGTACCGCTGGTATCGATTCGGCGCAAGCAGCGCTGGTGGCCGCCCAGGCCAACGAACGCAAg                                                                                          <  5:111441/147‑1 (MQ=255)                                                       ttCGAACTCGATCAGGAGCAGTACCGCATTGCCTTGGCCCGTGCCGAAGCCGACCTCGATACCGTGCGGCGGCAGATCGGCGCCAGTACCGCTGGTATCGATTCGGCGCAAGCAGCGCTGGTGGCCGCCCAGGCCAACGAACGCAAGgc                                                                                        >  3:209240/1‑149 (MQ=255)                                                           aaCTCGATCAGGAGCAGTACCGCATTGCCTTGGCCCGTGCCGAAGCCGACCTCGATACCGTGCGGCGGCAGATCGGCGCCAGTACCGCTGGTATCGATTCGGCGCAAGCAGCGCTGGTGGCCGCCCAGGCCAACGAACGCAAGGCGCgg                                                                                    <  5:94245/149‑1 (MQ=255)                                                              tCGATCAGGAGCAGTACCGCATTGCCTTGGCCCGTGCCGAAGCCGACCTCGATACCGTGCGGCGGCAGATCGGCGCCAGTACCGCTGGTATCGATTCGGCGCAAGCAGCGCTGGTGGCCGCCCAGGCCAACGAACGCAAGGCGCGGCAg                                                                                 >  7:85688/1‑149 (MQ=255)                                                                     ggAGCAGTACCGCATTGCCTTGGCCCGTGCCGAAGCCGACCTCGATACCGTGCGGCGGCAGATCGGCGCCAGTACCGCTGGTATCGATTCGGCGCAAGCAGCGCTGGTGGCCGCCCAGGCCAACGAACGCAAGGCGCGGCAGGACGCCg                                                                          >  1:285897/1‑149 (MQ=255)                                                                        gCAGTACCGCATTGCCTTGGCCCGTGCCGAAGCCGACCTCGATACCGTGCGGCGGCAGATCGGCGCCAGTACCGCTGGTATCGATTCGGCGCAAGCAGCGCTGGTGGCCGCCCAGGCCAACGAACGCAAGGCGCGGCAGGACGCCGAgc                                                                       >  1:175510/1‑149 (MQ=255)                                                                          aGTACCGCATTGCCTTGGCCCGTGCCGAAGCCGACCTCGATACCGTGCGGCGGCAGATCGGCGCCAGTACCGCTGGTATCGATTCGGCGCAAGCAGCGCTGGTGGCCGCCCAGGCCAACGAACGCAAGGCGCGGCAGGACGCCGAgcgc                                                                     <  2:17893/149‑1 (MQ=255)                                                                            tACAGCATTGCCTACGCCCTTGACTAAGCCCACCTCCATACATTGCGGCTGCAGATCTACTACAGTACAGCTTGTATCGATTCGGCTCAAGCAGCGCTGGTAGCCCCCCAGTCCAACGAACGCAAGGCGCGGCACGACGCCGAGCGcc                                                                    >  4:236890/1‑148 (MQ=255)                                                                                 cATTGCCTTGGCCCGTGCCGAAGCCGACCTCGATACCGTGCGGCGGCAGATCGGCGCCAGTACCGCTGGTATCGATTCGGCGCAAGCAGCGCTGGTGGCCGCCCAGGCCAACGAACGCAAGGCGCGGCAGGACGCCGAGCGCCTCAAAc                                                              <  5:253169/149‑1 (MQ=255)                                                                                     gCCTTGGCCCGTGCCGAAGCCGACCTCGATACCGTGCGGCGGCAGATCGGCGCCAGTACCGCTGGTATCGATTCGGCGCAAGCAGCGCTGGTGGCCGCCCAGGCCAACGAACGCAAGGCGCGGCAGGACGCCGAGCGCCTCAAACGGc                                                           <  4:209240/148‑1 (MQ=255)                                                                                      ccTTGGCCCGTGCCGAAGCCGACCTCGATACCGTGCGGCGGCAGATCGGCGCCAGTACCGCTGGTATCGATTCGGCGCAAGCAGCGCTGGTGGCCGCCCAGGCCAACGAACGCAAGGCGCGGCAGGACGCCGAGCGCCTCAAACGGCt                                                          >  5:184337/1‑148 (MQ=255)                                                                                       cTTGGCCCGTGCCGAAGCCGACCTCGATACCGTGCGGCGGCAGATCGGCGCCAGTACCGCTGGTATCGATTCGGCGCAAGCAGCGCTGGTGGCCGCCCAGGCCAACGAACGCAAGGCGCGGCAGGACGCCGAGCGCCTCAAACGGCTGa                                                        >  2:287379/1‑149 (MQ=255)                                                                                           gCCCGTGCCGAAGCCGACCTCGATACCGTGCGGCGGCAGATCGGCGCCAGTACCGCTGGTATCGATTCGGCGCAAGCAGCGCTGGTGGCCGCCCAGGCCAACGAACGCAAGGCGCGGCAGGACGCCGAGCGCCTCAAACGGCTGATTGa                                                    <  8:222342/149‑1 (MQ=255)                                                                                             ccGTGCCGAAGCCGACCTCGATACCGTGCGGCGGCAGATCGGCGCCAGTACCGCTGGTATCGATTCGGCGCAAGCAGCGCTGGTGGCCGCCCAGGCCAACGAACGCAAGGCGCGGCAGGACGCCGAGCGCCTCAAACGGCTGa                                                        >  7:133818/1‑143 (MQ=255)                                                                                             ccGTGCCGAAGCCGACCTCGATACCGTGCGGCGGCAGATCGGCGCCAGTACCGCTGGTATCGATTCGGCGCAAGCAGCGCTGGTGGCCGCCCAGGCCAACGAACGCAAGGCGCGGCAGGACGCCGAGCGCCTCAAACGGCTGa                                                        <  8:133818/143‑1 (MQ=255)                                                                                               gTGCCGAAGCCGACCTCGATACCGTGCGGCGGCAGATCGGCGCCAGTACCGCTGGTATCGATTCGGCGCAAGCAGCGCTGGTGGCCGCCCAGGCCAACGAACGCAAGGCGCGGCAGGACGCCGAGCGCCTCAAACGGCTGATTGACGaa                                                <  4:307726/149‑1 (MQ=255)                                                                                                 gCCGAAGCCGACCTCGATACCGTGCGGCGGCAGATCGGCGCCAGTACCGCTGGTATCGATTCGGCGCAAGCAGCGCTGGTGGCCGCCCAGGCCAACGAACGCAAGGCGCGGCAGGACGCCGAGCGCCTCAAACGGCTGATTGACGAAGa                                              <  8:85688/149‑1 (MQ=255)                                                                                                    gAAGCCGACCTCGATACCGTGCGGCGGCAGATCGGCGCCAGTACCGCTGGTATCGATTCGGCGCAAGCAGCGCTGGTGGCCGCCCAGGCCAACGAACGCAAGGCGCGGCAGGACGCCGAGCGCCTCAAACgg                                                            >  8:135118/1‑132 (MQ=255)                                                                                                    gAAGCCGACCTCGATACCGTGCGGCGGCAGATCGGCGCCAGTACCGCTGGTATCGATTCGGCGCAAGCAGCGCTGGTGGCCGCCCAGGCCAACGAACGCAAGGCGCGGCAGGACGCCGAGCGCCTCAAACgg                                                            <  7:135118/132‑1 (MQ=255)                                                                                                    gAAGCCGACCTCGATACCGTGCGGCGGCAGATCGGCGCCAGTACCGCTGGTATCGATTCGGCGCAAGCAGCGCTGGTGGCCGCCCAGGCCAACGAACGCAAGGCGCGGCAGGACGCCGAGCGCCTCAAACGGCTGATTGACGAAGAccc                                           <  2:175510/149‑1 (MQ=255)                                                                                                           aCCTCGATACCGTGCGGCGGCAGATCGGCGCCAGTACCGCTGGTATCGATTCGGCGCAAGCAGCGCTGGTGGCCGCCCAGGCCAACGAACGCAAGGCGCGGCAGGACGCCGAGCGCCTCAAACGGCTGATTGACGAAGACCCCGGTACg                                    >  2:158942/1‑149 (MQ=255)                                                                                                             cTCGATACCGTGCGGCGGCAGATCGGCGCCAGTACCGCTggtatcgaggtcggcttcggcacgggccaaggcaatgcggtactgctcctgatcgagttcgaacagcacatcgccctggcgcacctcctggttgttgcctacggccacac                                  <  1:80992‑M2/149‑111 (MQ=255)                                                                                                             cTCGATACCGTGCGGCGGCACATCGGCGCCAGTACCGATGGTATCGATTAGGCGCAAGCAGCGATGGTGGCCGCCCAGGCAAACGAACGCAAGGCGCGGCAGGACGCCTAGCGGCTCCAACGGCTCATTGACGAAGACCCCGGTACGgt                                  >  8:34780/1‑149 (MQ=255)                                                                                                                 aTACCGTGCGGCGGCAGATCGGCGCCAGTACCGCTGGTATCGATTCGGCGCAAGCAGCGCTGGTGGCCGCCCAGGCCAACGAACGCAAGGCGCGGCAGGACGCCGAGCGCCTCAAACGGCTGATTGACGAAGACCCCGGTACGGTGTCg                              <  1:287379/149‑1 (MQ=255)                                                                                                                   aCCGTGCGGCGGCAGATCGGCGCCAGTACCGCTggtatcgaggtcggcttcggcacgggccaaggcaatgcggtactgctcctgatcgagttcgaacagcacatcgccctggcgcacctcctggttgttgcctacggccacacgctt                              >  8:77790‑M2/1‑33 (MQ=255)                                                                                                                   aCCGTGCGGCGGCAGATCGGCGCCAGTACCGCTggtatcgaggtcggcttcggcacgggccaaggcaatgcggtactgctcctgatcgagttcgaacagcacatcgccctggcgcacctcctggttgttgcctacggccacacgctt                              <  7:77790‑M2/147‑115 (MQ=255)                                                                                                                     cGTGCGGCGGCAGATCGGCGCCAGTACCGCTGGTATCGATTCGGCGCAAGCAGCGCTGGTGGCCGCCCAGGCCAACGAACGCAAGGCGCGGCAGGACGCCGAGCGCCTCAAACGGCTGATTGACGAAGACCCCGGTACGGTGTCGGTgc                          <  1:139346/149‑1 (MQ=255)                                                                                                                     cGTGCGGCGGCAGATCGGCGCCAGTACCGCTGGTATCGATTCGGCGCAAGCAGCGCTGGTGGCCGCCCAGGCCAACGAACGCAAGGCGCGGCAGGACGCCGAGCGCCTCAAACGGCTGATTGACGAAGACCCCGGTACGGTGTCGGTgc                          >  2:139346/1‑149 (MQ=255)                                                                                                                          ggcggcAGATCGGCGCCAGTACCGCTGGTATCGATTCGGCGCAAGCAGCGCTGGTGGCCGCCCAGGCCAACGAACGCAAGGCGCGGCAGGACGCCGAGCGCCTCAAACGGCTGATTGACGAAGACCCCGGTACGGTGTCGGTGCGCCGt                     >  2:259872/1‑149 (MQ=255)                                                                                                                                aGATCGGCGCCAGTACCGCTGGTATCGATTCGGCGCAAGCAGCGCTGGTGGCCGCCCAGGCCAACGAACGCAAGGCGCGGCAGGACGCCGAGCGCCTCAAACGGCTGATTGACGAAGACCCCGGTACGGTGTCGGTGCGCCGTCTGGaa               <  6:119112/149‑1 (MQ=255)                                                                                                                                      gcgcCAGTACCGCTGGTATCGATTCGGCGCAAGCAGCGCTGGTGGCCGCCCAGGCCAACGAACGCAAGGCGCGGCAGGACGCCGAGCGCCTCAAACGGCTGATTGACGAAGACCCCGGTACGGTGTCGGTGCGCCGTCTGGAAGGCGcc         >  3:282254/1‑149 (MQ=255)                                                                                                                                       cgcCAGTACCGCTGGTATCTATTCGGCGCAAGCAGCGCTGGTGGCCGCCCAGGCCAACGAACGCAAGGCGCGGCAGGACGCCGAGCGCCTCAAACGGCTGATTGACGAAGACCCCGGTACGGTGTCGGGGCGCCTTCCAGACGgcgcac        <  3:236890/149‑3 (MQ=255)                                                                                                                                           aGTACCGCTGGTATCGATTCGGCGCAAGCAGCGCTGGTGGCCGCCCAGGCCAACGAACGCAAGGCGCGGCAGGACGCCGAGCGCCTCAAACGGCTGATTGACGAAGACCCCGGTACGGTGTCGGTGCGCCGTCTGGAAGGCGCCCAGGc    <  4:282254/149‑1 (MQ=255)                                                                                                                                             tACCGCTGGTATCGATTCGGCGCAAGCAGCGCTGGTGGCCGCCCAGGCCAACGAACGCAAGGCGCGGCAGGACGCCGAGCGCCTCAAACGGCTGATTGACGAAGACCCCGGTACGGTGTCGGTGCGCCGTCTGGAAGGCGCCCAGGCCa  >  5:79588/1‑149 (MQ=255)                                                                                                                                                cGCTGGTATCGATTCGGCGCAAGCAGCGCTGGTGGCCGCCCAGGCCAACGAACGCAAGGCGCGGCAGGACGCCGAGCGCCTCAAACGGCTGATTGACGAAGACCCCGGTACGGTGTCGGTGCGCCGTCTGGaa               >  3:57443/1‑133 (MQ=255)                                                                                                                                                cGCTGGTATCGATTCGGCGCAAGCAGCGCTGGTGGCCGCCCAGGCCAACGAACGCAAGGCGCGGCAGGACGCCGAGCGCCTCAAACGGCTGATTGACGAAGACCCCGGTACGGTGTCGGTGCGCCGTCTGGaa               <  4:57443/133‑1 (MQ=255)                                                                                                                                                   |                                                                                                                                               ATCAAGCGTGTGGCCGTAGGCAACAACCAGGAGGTGCGCCAGGGCGATGTGCTGTTCGAACTCGATCAGGAGCAGTACCGCATTGCCTTGGCCCGTGCCGAAGCCGACCTCGATACCGTGCGGCGGCAGATCGGCGCCAGTACCGCTGGTATCGATTCGGCGCAAGCAGCGCTGGTGGCCGCCCAGGCCAACGAACGCAAGGCGCGGCAGGACGCCGAGCGCCTCAAACGGCTGATTGACGAAGACCCCGGTACGGTGTCGGTGCGCCGTCTGGAAGGCGCCCAGGCCA  >  NC_002947/832418‑832706

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.