New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 832534	45 (0.870)	3 (0.060)	3/244	NT	6.5%	coding (297/1098 nt)	PP_0716	HlyD family secretion protein
	?	NC_002947	= 832564	44 (0.910)					coding (327/1098 nt)	PP_0716	HlyD family secretion protein

CGGTGGCCGCCGAAGTGGCCGGGCAGATCAAGCGTGTGGCCGTAGGCAACAACCAGGAGGTGCGCCAGGGCGATGTGCTGTTCGAACTCGATCAGGAGCAGTACCGCATTGCCTTGGCCCGTGCCGAAGCCGACCTCGATACCGTGCGGCGGCAGATCGGCGCCAGTACCGCTGGTATCGATTCGGCGCAAGCAGCGCTGGTGGCCGCCCAGGCCAACGAACGCAAGGCGCGGCAGGACGCCGAGCGCCTCAAACGGCTGATTGACGAAGACCCCGGTACGGTGTCGGTGC  >  NC_002947/832392‑832682                                                                                                                                               |                                                                                                                                                     cGGTGGCCGCCGAAGTGGCCGGGCAGATCAAGCGTGTGGCCGTAGGCAACAACCAGGAGGTGCGCCAGGGCGATGTGCTGTTCGAACTCGATCAGGAGCAGTACCGCATTGCCTTGGCCCGTGCCGAAGCCGACCTCGATACCGTgcgg                                                                                                                                                >  1:286477/1‑149 (MQ=255)        cgccgAAGTGGCCGGGCAGATCAAGCGTGTGGCCGTAGGCAACAACCAGGAGGTGCGCCAGGGCGATGTGCTGTTCGAACTCGATCAGGAGCAGTACCGCATTGCCTTGGCCCGTGCCGAAGCCGACCTCGATACCGTGcggcgg                                                                                                                                             >  5:119112/1‑145 (MQ=255)             aaGTGGCCGGGCAGATCAAGCGTGTGGCCGTAGGCTACAACCAGGAGGTGCGCAAGGGCGATGTGCTGTTCGAACTCGATCAGGAGCAGTACCGGATTGCCTTGGCCCGTGCCGAAGCCGACCTCGATACCGTGCGGCGGCAGATCGgc                                                                                                                                    >  4:212974/1‑149 (MQ=255)             aaGTGGCCGGGCAGATCAAGCGTGTGGCCGTAGGCAACAACCAGGAGGTGCGCCAGGGCGATGTGCTGTTCGAACTCGATCAGGAGCAGTACCGCATTGCCTTGGCCCGTGCCGAAGCCGACCTCGATACCGTgcggc                                                                                                                                               >  7:191000/1‑138 (MQ=255)             aaGTGGCCGGGCAGATCAAGCGTGTGGCCGTAGGCAACAACCAGGAGGTGCGCCAGGGCGATGTGCTGTTCGAACTCGATCAGGAGCAGTACCGCATTGCCTTGGCCCGTGCCGAAGCCGACCTCGATACCGTgcggc                                                                                                                                               <  8:191000/138‑1 (MQ=255)                    cGGGCAGATCAAGCGTGTGGCCGTAGGCAACAACCAGGAGGTGCGCCAGGGCGATGTGCTGTTCGAACTCGATCAGGAGCAGTACCGCATTGCCTTGGCCCGTGCCGAAGCCGACCTCGATAGCGTGCGGCGGCAGATCGGCGCCAgga                                                                                                                             >  8:162178/1‑147 (MQ=255)                           aTCAAGCGTGTGGCCGTAGGCAACAACCAGGAGGTGCGCCAGGGCGATGTGCTGTTCGAACTCGATCAGGAGCAGTACCGCATTGCCTTGGCCCGTGCCGAAGCCGACCTCGATACCGTGCGGCGGCAGATCGGCGCCAGTACCGCTgg                                                                                                                      >  3:258036‑M2/1‑147 (MQ=255)                              aaGCGTGTGGCCGTAGGCAACAACCAGGAGGTGCGCCAGGGCGATGTGCTGTTCGAACTCGATCAGGAGCAGTACCGCATTGCCTTGGCCCGTGCCGAAGCCGACCTCGATACCagcggtactggcgccgatctgccgccgcacggt                                                                                                                     <  7:77790‑M1/147‑34 (MQ=255)                              aaGCGTGTGGCCGTAGGCAACAACCAGGAGGTGCGCCAGGGCGATGTGCTGTTCGAACTCGATCAGGAGCAGTACCGCATTGCCTTGGCCCGTGCCGAAGCCGACCTCGATACCagcggtactggcgccgatctgccgccgcacggt                                                                                                                     >  8:77790‑M1/1‑114 (MQ=255)                                 cGTGTGGCCGTAGGCAACAACCAGGAGGTGCGCCAGGGCGATGTGCTGTTCGAACTCGATCAGGAGCAGTACCGCATTGCCTTGGCCCGTGCCGAAGCCGACCTCGATACCGTGCGGCGGCAGATCGGCGCCAGTACCg                                                                                                                          >  2:162551/1‑139 (MQ=255)                                 cGTGTGGCCGTAGGCAACAACCAGGAGGTGCGCCAGGGCGATGTGCTGTTCGAACTCGATCAGGAGCAGTACCGCATTGCCTTGGCCCGTGCCGAAGCCGACCTCGATACCGTGCGGCGGCAGATCGGCGCCAGTACCg                                                                                                                          <  1:162551/139‑1 (MQ=255)                                  gtgtGGCCGTAGGCAACAACCAGGAGGTGCGCCAGGGCGATGTGCTGTTCGAACTCGATCAGGAGCAGTACCGCATTGCCTTGGCCCGTGCCGAAGCCGACCTCGATACCagcggtactggcgccgatctgccgccgcacggtatcgag                                                                                                               <  1:80992‑M1/149‑40 (MQ=255)                                        ccGTAGGCAACAACCAGGAGGTGCGCCAGGGCGATGTGCTGTTCGAACTCGATCAGGAGCAGTACCGCATTGCCTTGGCCCGTGCCGAAGCCGACCTCGATACCGTGCGGCGGCAGATCGGCGCCAGTACCGCTGGTATCGATTCGgcg                                                                                                         >  6:94245/1‑149 (MQ=255)                                                aacaacCAGGAGGTGCGCCAGGGCGATGTGCTGTTCGAACTCGATCAGGAGCAGTACCGCATTGCCTTGGCCCGTGCCGAAGCCGACCTCGATACCGTGCGGCGGCAGATCGGCGCCAGTACCGCt                                                                                                                        >  1:176741/1‑126 (MQ=255)                                                aacaacCAGGAGGTGCGCCAGGGCGATGTGCTGTTCGAACTCGATCAGGAGCAGTACCGCATTGCCTTGGCCCGTGCCGAAGCCGACCTCGATACCGTGCGGCGGCAGATCGGCGCCAGTACCGCt                                                                                                                        <  2:176741/126‑1 (MQ=255)                                                aacaacCAGGAGGTGCGCCAGGGCGATGTGCTGTTCGAACTCGATCAGGAGCAGTACCGCATTGCCTTGGCCCGTGCCGAAGCCGACCTCGATACCGTGCGGCGGCAGATCGGCGCCAGTACCGCTGGTATCGATTCGGCGCAagcagc                                                                                                 >  6:253169/1‑149 (MQ=255)                                                   aacCAGGATGTGCGCCAGGGCGATGTGCTGTTCGAACTCGATCAGGAGCAGTACCGCATTGCCTTGGCCCGTGCCGAAGCCGACCTCGATACCGTGCGGCGGCAGATCGGCGCCAGTACCGCTGGTATCGATTCGGCGCAAGCAGCGCt                                                                                              <  4:181534/149‑1 (MQ=255)                                                    acCAGGAGGTGCGCCAGGGCGATGTGCTGTTCGAACTCGATCAGGAGCAGTACCGCATTGCCTTGGCCCGTGCCGAAGCCGACCTCGATACCGTGCGGCGGCAGATCGGCGCCAGTACCGCTGGTATCGATTCGGCGCAAGCAGCGCtg                                                                                             <  1:136582/149‑1 (MQ=255)                                                      cAGGAGGTGCGCCAGGGCGATGTGCTGTTCGAACTCGATCAGGAGCAGTACCGCATTGCCTTGGCCCGTGCCGAAGCCGACCTCGATACCGTGCGGCGGCAGATCGGCGCCAGTACCGCTGGTATCGATTCGGCGCAAGCAGCGCtggt                                                                                           >  3:72939/1‑149 (MQ=255)                                                       aggaggTGCGCCAGGGCGATGTGCTGTTCGAACTCGATCAGGAGCAGTACCGCATTGCCTTGGCCCGTGCCGAAGCCGACCTCGATACCGTGCGGCGGCAGATCGGCGCCAGTACCGCTGGTATCGATTCGGCGCAAGCAGCGCtggtg                                                                                          <  2:286477/149‑1 (MQ=255)                                                        ggaggTGCGCCAGGGCGATGTGCTGTTCGAACTCGATCAGGAGCAGTACCGCATTGCCTTGGCCCGTGCCGAAGCCGACCTCGATACCGTGCGGCGGCAGATCGGCGCCAGTACCGCTGGTATCGATTCGGCGCAAGCAGCGCtggtgg                                                                                         >  7:188540/1‑149 (MQ=255)                                                           ggTGCGCCAGGGCGATGTGCTGTTCGAACTCGATCAGGAGCAGTACCGCATTGCCTTGGCCCGTGCCGAAGCCGACCTCGATACCGTGCGGCGGCAGATCGGCGCCAGTACCGCTGGTATCGATTCGGCGCAAGCAGCGCtggtgg                                                                                         <  3:11136/146‑1 (MQ=255)                                                           ggTGCGCCAGGGCGATGTGCTGTTCGAACTCGATCAGGAGCAGTACCGCATTGCCTTGGCCCGTGCCGAAGCCGACCTCGATACCGTGCGGCGGCAGATCGGCGCCAGTACCGCTGGTATCGATTCGGCGCAAGCAGCGCtggtgg                                                                                         >  4:11136/1‑146 (MQ=255)                                                                 ccAGGGCGATGTGCTGTTCGAACTCGATCAGGAGCAGTACCGCATTGCCTTGGCCCGTGCCGAAGCCGACCTCGATACCGTGCGGCGGCAGATCGGCGCCAGTACCGCTGGTATCGATTCGGCGCAAGCAGCGCTGGTGGCCGCCCAgg                                                                                <  4:72939/149‑1 (MQ=255)                                                                  cAGGGCGATGTGCTGTTCGAACTCGATCAGGAGCAGTACCGCATTGCCTTGGCCCGTGCCGAAGCCGACCTCGATACCGTGCGGCGGCAGATCGGCGCCAGTACCGCTGGTATCGATTCGGCGCAAGCAGCGCTGGTGGCCGCCCAGGc                                                                               >  3:307726/1‑149 (MQ=255)                                                                      gCGATGTGCTGTTCGAACTCGATCAGGAGCAGTACCGCATTGCCTTGGCCCGTGCCGAAGCCGACCTCGATACCGTGCGGCGGCAGATCGGCGCCAGTACCGCTGGTATCGATTCGGCGCAAGCAGCGCTGGTGGCCGCACAGGCCaac                                                                           <  8:188540/149‑1 (MQ=255)                                                                          tgtgCTGTTCGAACTCGATCAGGAGCAGTACCGCATTGCCTTGGCCCGTGCCGAAGCCGACCTCGATACCGTGCGGCGGCAGATCGGCGCCAGTACCGCTGGTATCGATTCGGCGCAAGCAGCGCTGGTGGCCGCCCAGGCCaacgaac                                                                       >  6:111441/1‑149 (MQ=255)                                                                                 ttCGAACTCGATCAGGAGCAGTACCGCATTGCCTTGGCCCGTGCCGAAGCCGACCTCGATACCGTGCGGCGGCAGATCGGCGCCAGTACCGCTGGTATCGATTCGGCGCAAGCAGCGCTGGTGGCCGCCCAGGCCAACGAACGCAAg                                                                  <  5:111441/147‑1 (MQ=255)                                                                                 ttCGAACTCGATCAGGAGCAGTACCGCATTGCCTTGGCCCGTGCCGAAGCCGACCTCGATACCGTGCGGCGGCAGATCGGCGCCAGTACCGCTGGTATCGATTCGGCGCAAGCAGCGCTGGTGGCCGCCCAGGCCAACGAACGCAAGgc                                                                >  3:209240/1‑149 (MQ=255)                                                                                     aaCTCGATCAGGAGCAGTACCGCATTGCCTTGGCCCGTGCCGAAGCCGACCTCGATACCGTGCGGCGGCAGATCGGCGCCAGTACCGCTGGTATCGATTCGGCGCAAGCAGCGCTGGTGGCCGCCCAGGCCAACGAACGCAAGGCGCgg                                                            <  5:94245/149‑1 (MQ=255)                                                                                        tCGATCAGGAGCAGTACCGCATTGCCTTGGCCCGTGCCGAAGCCGACCTCGATACCGTGCGGCGGCAGATCGGCGCCAGTACCGCTGGTATCGATTCGGCGCAAGCAGCGCTGGTGGCCGCCCAGGCCAACGAACGCAAGGCGCGGCAg                                                         >  7:85688/1‑149 (MQ=255)                                                                                               ggAGCAGTACCGCATTGCCTTGGCCCGTGCCGAAGCCGACCTCGATACCGTGCGGCGGCAGATCGGCGCCAGTACCGCTGGTATCGATTCGGCGCAAGCAGCGCTGGTGGCCGCCCAGGCCAACGAACGCAAGGCGCGGCAGGACGCCg                                                  >  1:285897/1‑149 (MQ=255)                                                                                                  gCAGTACCGCATTGCCTTGGCCCGTGCCGAAGCCGACCTCGATACCGTGCGGCGGCAGATCGGCGCCAGTACCGCTGGTATCGATTCGGCGCAAGCAGCGCTGGTGGCCGCCCAGGCCAACGAACGCAAGGCGCGGCAGGACGCCGAgc                                               >  1:175510/1‑149 (MQ=255)                                                                                                    aGTACCGCATTGCCTTGGCCCGTGCCGAAGCCGACCTCGATACCGTGCGGCGGCAGATCGGCGCCAGTACCGCTGGTATCGATTCGGCGCAAGCAGCGCTGGTGGCCGCCCAGGCCAACGAACGCAAGGCGCGGCAGGACGCCGAgcgc                                             <  2:17893/149‑1 (MQ=255)                                                                                                      tACAGCATTGCCTACGCCCTTGACTAAGCCCACCTCCATACATTGCGGCTGCAGATCTACTACAGTACAGCTTGTATCGATTCGGCTCAAGCAGCGCTGGTAGCCCCCCAGTCCAACGAACGCAAGGCGCGGCACGACGCCGAGCGcc                                            >  4:236890/1‑148 (MQ=255)                                                                                                           cATTGCCTTGGCCCGTGCCGAAGCCGACCTCGATACCGTGCGGCGGCAGATCGGCGCCAGTACCGCTGGTATCGATTCGGCGCAAGCAGCGCTGGTGGCCGCCCAGGCCAACGAACGCAAGGCGCGGCAGGACGCCGAGCGCCTCAAAc                                      <  5:253169/149‑1 (MQ=255)                                                                                                               gCCTTGGCCCGTGCCGAAGCCGACCTCGATACCGTGCGGCGGCAGATCGGCGCCAGTACCGCTGGTATCGATTCGGCGCAAGCAGCGCTGGTGGCCGCCCAGGCCAACGAACGCAAGGCGCGGCAGGACGCCGAGCGCCTCAAACGGc                                   <  4:209240/148‑1 (MQ=255)                                                                                                                ccTTGGCCCGTGCCGAAGCCGACCTCGATACCGTGCGGCGGCAGATCGGCGCCAGTACCGCTGGTATCGATTCGGCGCAAGCAGCGCTGGTGGCCGCCCAGGCCAACGAACGCAAGGCGCGGCAGGACGCCGAGCGCCTCAAACGGCt                                  >  5:184337/1‑148 (MQ=255)                                                                                                                 cTTGGCCCGTGCCGAAGCCGACCTCGATACCGTGCGGCGGCAGATCGGCGCCAGTACCGCTGGTATCGATTCGGCGCAAGCAGCGCTGGTGGCCGCCCAGGCCAACGAACGCAAGGCGCGGCAGGACGCCGAGCGCCTCAAACGGCTGa                                >  2:287379/1‑149 (MQ=255)                                                                                                                     gCCCGTGCCGAAGCCGACCTCGATACCGTGCGGCGGCAGATCGGCGCCAGTACCGCTGGTATCGATTCGGCGCAAGCAGCGCTGGTGGCCGCCCAGGCCAACGAACGCAAGGCGCGGCAGGACGCCGAGCGCCTCAAACGGCTGATTGa                            <  8:222342/149‑1 (MQ=255)                                                                                                                       ccGTGCCGAAGCCGACCTCGATACCGTGCGGCGGCAGATCGGCGCCAGTACCGCTGGTATCGATTCGGCGCAAGCAGCGCTGGTGGCCGCCCAGGCCAACGAACGCAAGGCGCGGCAGGACGCCGAGCGCCTCAAACGGCTGa                                >  7:133818/1‑143 (MQ=255)                                                                                                                       ccGTGCCGAAGCCGACCTCGATACCGTGCGGCGGCAGATCGGCGCCAGTACCGCTGGTATCGATTCGGCGCAAGCAGCGCTGGTGGCCGCCCAGGCCAACGAACGCAAGGCGCGGCAGGACGCCGAGCGCCTCAAACGGCTGa                                <  8:133818/143‑1 (MQ=255)                                                                                                                         gTGCCGAAGCCGACCTCGATACCGTGCGGCGGCAGATCGGCGCCAGTACCGCTGGTATCGATTCGGCGCAAGCAGCGCTGGTGGCCGCCCAGGCCAACGAACGCAAGGCGCGGCAGGACGCCGAGCGCCTCAAACGGCTGATTGACGaa                        <  4:307726/149‑1 (MQ=255)                                                                                                                           gCCGAAGCCGACCTCGATACCGTGCGGCGGCAGATCGGCGCCAGTACCGCTGGTATCGATTCGGCGCAAGCAGCGCTGGTGGCCGCCCAGGCCAACGAACGCAAGGCGCGGCAGGACGCCGAGCGCCTCAAACGGCTGATTGACGAAGa                      <  8:85688/149‑1 (MQ=255)                                                                                                                              gAAGCCGACCTCGATACCGTGCGGCGGCAGATCGGCGCCAGTACCGCTGGTATCGATTCGGCGCAAGCAGCGCTGGTGGCCGCCCAGGCCAACGAACGCAAGGCGCGGCAGGACGCCGAGCGCCTCAAACgg                                    <  7:135118/132‑1 (MQ=255)                                                                                                                              gAAGCCGACCTCGATACCGTGCGGCGGCAGATCGGCGCCAGTACCGCTGGTATCGATTCGGCGCAAGCAGCGCTGGTGGCCGCCCAGGCCAACGAACGCAAGGCGCGGCAGGACGCCGAGCGCCTCAAACgg                                    >  8:135118/1‑132 (MQ=255)                                                                                                                              gAAGCCGACCTCGATACCGTGCGGCGGCAGATCGGCGCCAGTACCGCTGGTATCGATTCGGCGCAAGCAGCGCTGGTGGCCGCCCAGGCCAACGAACGCAAGGCGCGGCAGGACGCCGAGCGCCTCAAACGGCTGATTGACGAAGAccc                   <  2:175510/149‑1 (MQ=255)                                                                                                                                     aCCTCGATACCGTGCGGCGGCAGATCGGCGCCAGTACCGCTGGTATCGATTCGGCGCAAGCAGCGCTGGTGGCCGCCCAGGCCAACGAACGCAAGGCGCGGCAGGACGCCGAGCGCCTCAAACGGCTGATTGACGAAGACCCCGGTACg            >  2:158942/1‑149 (MQ=255)                                                                                                                                       cTCGATACCGTGCGGCGGCAGATCGGCGCCAGTACCGCTggtatcgaggtcggcttcggcacgggccaaggcaatgcggtactgctcctgatcgagttcgaacagcacatcgccctggcgcacctcctggttgttgcctacggccacac          <  1:80992‑M2/149‑111 (MQ=255)                                                                                                                                       cTCGATACCGTGCGGCGGCACATCGGCGCCAGTACCGATGGTATCGATTAGGCGCAAGCAGCGATGGTGGCCGCCCAGGCAAACGAACGCAAGGCGCGGCAGGACGCCTAGCGGCTCCAACGGCTCATTGACGAAGACCCCGGTACGgt          >  8:34780/1‑149 (MQ=255)                                                                                                                                           aTACCGTGCGGCGGCAGATCGGCGCCAGTACCGCTGGTATCGATTCGGCGCAAGCAGCGCTGGTGGCCGCCCAGGCCAACGAACGCAAGGCGCGGCAGGACGCCGAGCGCCTCAAACGGCTGATTGACGAAGACCCCGGTACGGTGTCg      <  1:287379/149‑1 (MQ=255)                                                                                                                                             aCCGTGCGGCGGCAGATCGGCGCCAGTACCGCTggtatcgaggtcggcttcggcacgggccaaggcaatgcggtactgctcctgatcgagttcgaacagcacatcgccctggcgcacctcctggttgttgcctacggccacacgctt      <  7:77790‑M2/147‑115 (MQ=255)                                                                                                                                             aCCGTGCGGCGGCAGATCGGCGCCAGTACCGCTggtatcgaggtcggcttcggcacgggccaaggcaatgcggtactgctcctgatcgagttcgaacagcacatcgccctggcgcacctcctggttgttgcctacggccacacgctt      >  8:77790‑M2/1‑33 (MQ=255)                                                                                                                                              ccagcggtactggcgccgatctgccgccgcacggtatcgaggtcggcttcggcacgggccaaggcaatgcggtactgctcctgatcgagttcgaacagcacatcgccctggcgcacctcctggttgttgcctacggccacacgcttgat   >  3:258036‑M1/1‑2 (MQ=255)                                                                                                                                               cGTGCGGCGGCAGATCGGCGCCAGTACCGCTGGTATCGATTCGGCGCAAGCAGCGCTGGTGGCCGCCCAGGCCAACGAACGCAAGGCGCGGCAGGACGCCGAGCGCCTCAAACGGCTGATTGACGAAGACCCCGGTACGGTGTCGGTgc  >  2:139346/1‑149 (MQ=255)                                                                                                                                               cGTGCGGCGGCAGATCGGCGCCAGTACCGCTGGTATCGATTCGGCGCAAGCAGCGCTGGTGGCCGCCCAGGCCAACGAACGCAAGGCGCGGCAGGACGCCGAGCGCCTCAAACGGCTGATTGACGAAGACCCCGGTACGGTGTCGGTgc  <  1:139346/149‑1 (MQ=255)                                                                                                                                               |                                                                                                                                                     CGGTGGCCGCCGAAGTGGCCGGGCAGATCAAGCGTGTGGCCGTAGGCAACAACCAGGAGGTGCGCCAGGGCGATGTGCTGTTCGAACTCGATCAGGAGCAGTACCGCATTGCCTTGGCCCGTGCCGAAGCCGACCTCGATACCGTGCGGCGGCAGATCGGCGCCAGTACCGCTGGTATCGATTCGGCGCAAGCAGCGCTGGTGGCCGCCCAGGCCAACGAACGCAAGGCGCGGCAGGACGCCGAGCGCCTCAAACGGCTGATTGACGAAGACCCCGGTACGGTGTCGGTGC  >  NC_002947/832392‑832682

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.