| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 975190 | 28 (0.540) | 5 (0.110) | 4/220 | NT | 17.0% | intergenic (+39/+130) | ycfJ/suhB | flagella biosyntheis regulator/bifunctional inositol monophosphatase/glycerol‑2‑phosphatase |
| ? | NC_002947 | = 975222 | 25 (0.570) | intergenic (+71/+98) | ycfJ/suhB | flagella biosyntheis regulator/bifunctional inositol monophosphatase/glycerol‑2‑phosphatase | |||||
CTACAACGTGACCTATTCCATCGGTGATCAGGTAGGCAAGGTGAAGATGGATCGCGAGCCGGGATCGACCATTCCGCTGGACAAGAATGGCAAGCTGATTCTGAGCGAAGCGGGTCAGTGATTTGCGGTGTCTGTGCCGGCCTCTTCGCGGGTAAACCCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/975031‑975190‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cctcttcgcgggtaaacccgCTCCTACATGGATCGCATTGCCCCTGTAGGATCGGGTTTACCCGCGAAGAGGCCGGCACAGACACCGCAAATCACTGACCCGCTTCGCTCAGAATCAGCTTGCCATTCTTGTCCAGCGGAATGGTCGATCCCGGCTCGCGATCC < NC_002947/975222‑975079 CTACAACGTGACCTATTCCATCGGTGATCAGGTAGGCAAGGTGAAGATGGATCGCGAGCCGGGATCGACCATTCCGCTGGACAAGAATGGCAAGCTGATTCTGAGCGAAGCGGGTCAGTGATTTGCGGTGTCTGTGCCGGCCTCTTCGC > 1:8509/1‑149 TACAACGTGACCTATTCCATCGGTGATCAGGTAGGCAAGGTGAAGATGGATCGCGAGCCGGGATCGACCATTCCGCTGGACAAGAATGGCAAGCTGATTCTGAGCGAAGCGGGTCAGTGATTTGCGGTGTCTGTGCCGGCCTCTTCGCG > 8:46052/1‑149 ACAACGTGACCTATTCCATCGGTGATCAGGTAGGCAAGGTGAAGATGGATCGCGAGCCGGGATCGACCATTCCGCTGGACAAGAATGGCAAGCTGATTCTGAGCGAAGCGGGTCAGTGATTTGCGGTGTCTGTGCCGGCCTCTTCGCGG > 4:318918/1‑149 CGTGACCTATTCCATCGGTGATCAGGTAGGCAAGGTGAAGATGGATCGCGAGCCGGGATCGACCATTCCGCTGGACAAGAATGGCAAGCTGATTCTGAGCGAAGCGGGTCAGTGATTTGCGGTGTCTGTGCCGGCCTCTTCGCGGGTAA < 3:318918/149‑1 GTGACCTATTCCATCGGTGATCAGGTAGGCAAGGTGAAGATGGATCGCGAGCCGGGATCGACCATTCCGCTGGACAAGAATGGCAAGCTGATTCTGAGCGAAGCGGGTCAGTGATTTGCGGTGTCTGTGCCGGCCTCTTCGCGGGTAAA < 5:223104/149‑1 CCTATTCCATCGGTGATCAGGTAGGCAAGGTGAAGATGGATCGCGAGCCGGGATCGACCATTCCGCTGGACAAGAATGGCAAGCTGATTCTGAGCGAAGCGGGTCAGTGATTTGCGGTGTCTGTGCCGGCCTCTTCGCGGGTAAACC > 1:125226/1‑147 CCTATTCCATCGGTGATCAGGTAGGCAAGGTGAAGATGGATCGCGAGCCGGGATCGACCATTCCGCTGGACAAGAATGGCAAGCTGATTCTGAGCGAAGCGGGTCAGTGATTTGCGGTGTCTGTGCCGGCCTCTTCGCGGGTAAACC < 2:125226/147‑1 ATCGGTGATCAGGTAGGCAAGGTGAAGATGGATCGCGAGCCGGGATCGACCATTCCGCTGGACAAGAATGGCAAGCTGATTCTGAGCGAAGCGGGTCAGTGATTTGCGGTGTCTGTGCCGGCCTCTTCGCGG > 7:67856/1‑132 ATCGGTGATCAGGTAGGCAAGGTGAAGATGGATCGCGAGCCGGGATCGACCATTCCGCTGGACAAGAATGGCAAGCTGATTCTGAGCGAAGCGGGTCAGTGATTTGCGGTGTCTGTGCCGGCCTCTTCGCGG < 8:67856/132‑1 GATGGATCGCGAGCCGGGATCGACCATTCCGCTGGACAAGAATGGCAAGCTGATTCTGAGCGAAGCGGGTCAGTGATTTGCGGTGTCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACATGGATCGCATTGCCCCTGTAGGATCG < 3:250358/149‑1 TGGATCGCGAGCCGGGATCGACCATTCCGCTGGACAAGAATGGCAAGCTGATTCTGAGCGAAGCGGGTCAGTGATTTGCGGTGTCTGTTCCGGCCTCTTCGCGGGTAAACCCGCTCCTACATGGATCGCATTGCCCCTGTAGGATCGG < 8:143040/148‑1 GCGAGCCGGGATCGACCATTCCGCTGGACAAGAATGGCAAGCTGATTCTGAGCGAAGCGGGTCAGTGATTTGCGGTGTCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACATGGATCGCATTGCCCCTGTAGGATCGGGTTTAC < 8:234853/148‑1 CAAGAATGGCAAGCTGATTCTGAGCGAAGCGGGTCAGTGATTTGCGGTGTCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACATGGATCGCATTGCCCCTGTAGGATCGG < 5:8075/114‑1 CAAGAATGGCAAGCTGATTCTGAGCGAAGCGGGTCAGTGATTTGCGGTGTCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACATGGATCGCATTGCCCCTGTAGGATCGG > 6:8075/1‑114 TTCGCGGGTAAACCCGCTCCTACATGGATCGCATTGCCCCTGTAGGATCGGGTTTACCCGCGAAGAGGCCGGCACAGACACCGCAAATCACTGACCCGCTTCGCTCAGAATCAGCTTGCCATTCTTGTCCAGCGGAATGGTCGATCCCG > 6:79998/1‑149 TTCGCGGGTAAACCCGCTCCTACATGGATCGCATTGCCCCTGTAGGATCGGGGTTACCCGCGAAGAGGCCGGCACAGACACCGCAAATCACTGACCCGCGTGGCTCAGAATCAGCTTGCCATTCTTGTCCAGCGGAATGGTCGAACCCG > 4:95916/1‑149 CGCGGGTAAACCCGCTCCTACATGGATCGCATTGCCCCTGTAGGATCGGGTTTACCCGCGAAGAGGCCGGCACAGACACCGCAAATCACTGACCCGCTTCGCTCAGAATCAGCTTGCCATTCTTGTCCAGCGGAATGGTCGATCCC < 8:103877/146‑1 GGGTAAACCCGCTCCTACATGGATCGCATTGCCCCTGTAGGATCGGGTTTACCCGCGAAGAGGCCGGCACAGACACCGCAAATCACTGACCCGCTTCGCTCAGAATCAGCTTGCCATTCTTGTCCAGCGGAATGGTCGATCCCGGCTCG > 4:161941/1‑149 ACCCGCTCCTACATGGATCGCATTGCCCCTGTAGGATCGGGTTTACCCGCGAAGAGGCCGGCACAGACACCGCAAATCACTGACCCGCTTCGCTCAGAATCAGCTTGCCATTCTTGTCCAGCGGAATGGTCGATCCCGGCTCGCGATCC < 2:177906/149‑1 CTACAACGTGACCTATTCCATCGGTGATCAGGTAGGCAAGGTGAAGATGGATCGCGAGCCGGGATCGACCATTCCGCTGGACAAGAATGGCAAGCTGATTCTGAGCGAAGCGGGTCAGTGATTTGCGGTGTCTGTGCCGGCCTCTTCGCGGGTAAACCCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/975031‑975190‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cctcttcgcgggtaaacccgCTCCTACATGGATCGCATTGCCCCTGTAGGATCGGGTTTACCCGCGAAGAGGCCGGCACAGACACCGCAAATCACTGACCCGCTTCGCTCAGAATCAGCTTGCCATTCTTGTCCAGCGGAATGGTCGATCCCGGCTCGCGATCC < NC_002947/975222‑975079 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |