| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 975190 | 28 (0.540) | 5 (0.110) | 4/220 | NT | 17.0% | intergenic (+39/+130) | ycfJ/suhB | flagella biosyntheis regulator/bifunctional inositol monophosphatase/glycerol‑2‑phosphatase |
| ? | NC_002947 | = 975222 | 25 (0.570) | intergenic (+71/+98) | ycfJ/suhB | flagella biosyntheis regulator/bifunctional inositol monophosphatase/glycerol‑2‑phosphatase | |||||
GGATCGCGAGCCGGGATCGACCATTCCGCTGGACAAGAATGGCAAGCTGATTCTGAGCGAAGCGGGTCAGTGATTTGCGGTGTCTGTGCCGGCCTCTTCGCGGGTAAACCCGATCCTACAGGGGCAATGCGATCCATGTAGGAGCGGGTTTACCCGCGAAGAGGTCGGTACAGGCCACGCAAAACCACCAGGCACAAAAAAGCACCTCAAGAGGTGCTTTTTGTTTGCCGGCAATCTGCGCTTAGCGCTTCATGCTTTCTGGCAGGTGCGGCTGGATGGCAGTCAGTACCG > NC_002947/975079‑975369 | ggATCGCGAGCCGGGATCGACCATTCCGCTGGACAAGAATGGCAAGCTGATTCTGAGCGAAGCGGGTCAGTGATTTGCGGTGTCTGTGCCGGCCTCTTCGCGGGTAAACCCGATCCTACAGGGGCAATGCGATCCATGTAGGAGcgggt < 2:177906‑M2/149‑6 (MQ=255) cgAGCCGGGATCGACCATTCCGCTGGACAAGAATGGCAAGCTGATTCTGAGCGAAGCGGGTCAGTGATTTGCGGTGTCTGTGCCGGCCTCTTCGCGGGTAAACCCGATCCTACAGGGGCAATGCGATCCATGTAGGAGcgggtttaccc > 4:161941‑M2/1‑138 (MQ=255) cGGGTTCGACCATTCCGCTGGACAAGAATGGCAAGCTGATTCTGAGCCACGCGGGTCAGTGATTTGCGGTGTCTGTGCCGGCCTCTTCGCGGGTAACCCCGATCCTACAGGGGCAATGCGATCCATGTAGGAGcgggtttacccgcgaa > 4:95916‑M2/1‑133 (MQ=255) cGGGATCGACCATTCCGCTGGACAAGAATGGCAAGCTGATTCTGAGCGAAGCGGGTCAGTGATTTGCGGTGTCTGTGCCGGCCTCTTCGCGGGTAAACCCGATCCTACAGGGGCAATGCGATCCATGTAGGAGcgggtttacccgcgaa > 6:79998‑M2/1‑133 (MQ=255) gggATCGACCATTCCGCTGGACAAGAATGGCAAGCTGATTCTGAGCGAAGCGGGTCAGTGATTTGCGGTGTCTGTGCCGGCCTCTTCGCGGGTAAACCCGATCCTACAGGGGCAATGCGATCCATGTAGGAGcgggtttacccgcg < 8:103877‑M2/146‑15 (MQ=255) tCGACCATTCCGCTGGACAAGAATGGCAAGCTGATTCTGAGCGAAGCGGGTCAGTGATTTGCGGTGTCTGTGCCGGCCTCTTCGCGGGTAAACCCGATCCTACAGGGGCAATGCGATCCATGTAGGAGCGGGTTTACCCGCGAAGAGGt > 6:78211/1‑149 (MQ=255) gACCATTCCGCTGGACAAGAATGGCAAGCTGATTCTGAGCGAAGCGGGTCAGTGATTTGCGGTGTCTGTGCCGGCCTCTTCGCGGGTAAACCCGATCCTACAGGGGCAATGCGATCCATGTAGGAGCGGGTTTACCCGCGAAGAGGTCg > 2:67227/1‑149 (MQ=255) cGCTGGACAAGAAAGGCAAGCTGATTCTGACCGAAGCGGGTCAGTGATTTGCGGTGTCTGTGCCGGCCTCTTCGCGGGTAAACCCGATCCTACATGGGCGATGCGATCCATGTAGGAGCGGGTTTACCCGCGAAGAGGTCGGTACAGGc > 5:270574/1‑149 (MQ=255) cAAGCTGATTCTGAGCGACGCGGGTCAGTGATTTGCGGTGTCTGTGCCGGCCTCTTCGCGGGTAAACCCGATCCTACAGGGGCAATGCGATCCATGTAGGAGCGGGTTTACCCGCGAAGAGGTCGGTACAGGCCACGCAAAACCACCAg < 5:243981/149‑1 (MQ=255) aGCGAAGCGGGTCAGTGATTTGCGGTGTCTGTGCCGGCCTCTTCGCGGGTAAACCCGATCCTACAGGGGCAATGCGATCCATGTAGGAGCGGGTTTACCCGCGAAGAGGTCGGTACAGGCCACGCAAAACCACCAGGCACAAAAAAGc < 7:103877/148‑1 (MQ=255) ggTCAGTTATTTGCGGTGGCTGGCCCGGCCTCTTCGGGGTTACACCCGACCCTACCGGGGCAATGCTTTCATTGTCGGTGGGGTTTAACCCGCGAAGAGGTCGGTACAGGCCACGCAAAACCACCAGGCACAAAAAAGCACCTCAagag < 4:314993/149‑1 (MQ=255) cGGCCTCTTCGCGGGTAAACCCGATCCTACAGGGGCAATGCGATCCATGTAGGAGCGGGTTTACCCGCGAAGAGGTCGGTACAGGCCCCGCAAAACCACCAGGCACAAAAAAGCACCTCAAGAGGTGCTTTTTGTTTGCCGGCAATCTg > 7:281454/1‑149 (MQ=255) gCCTCTTCGCGGGTAAACCCGATCCTACAGGGGCAATGCGATCCATGTAGGAGCGGGTTTACCCGCGAAGAGGTCGGTACAGGCCACGCAAAACCACCAGGCACAAAAAAGCACCTCAag > 3:162203/1‑120 (MQ=255) gCCTCTTCGCGGGTAAACCCGATCCTACAGGGGCAATGCGATCCATGTAGGAGCGGGTTTACCCGCGAAGAGGTCGGTACAGGCCACGCAAAACCACCAGGCACAAAAAAGCACCTCAAGAGGTGCTTTTTGTTTGCCGGCAATCTgcg > 2:215485/1‑149 (MQ=255) ctctTCGCGGGTAAACCCGATCCTACAGGGGCAATGCGATCCATGTAGGAGCGGGTTTACCCGCGAAGAGGTCGGTACAGGCCACGCCAAACCACCAGGCACAAAAAAGCACCTCAAGAGGTGCGTGTTGTTTGCCGGCAATCTGCGCt > 7:50811/1‑149 (MQ=255) cgcgGGTAACCCCGATCCTCCCGGGGCAATGCCATCCATGTAGGAGCGGGTTAACCCGCGAAGAGGTCGGTACAGGCCACGCAAAACCACCAGGCACAAAAAAGCACCTCAAGAGGTGCTTTTTGTTTGCCGGCAATCTGCGCTTAg < 5:78211/147‑1 (MQ=255) gggTAAACCCGATCCTACAGGGGCAATGCGATCCATGTAGGAGCGGGTTTACCCGCGAAGAGGTCGGTACAGGCCACGCAAAACCACCAGGCACAAAAAAGCACCTCAAGAGGTGCTTTTTGTTTGCCGGCAATCTGCGCTTAGCGCtt > 5:130056/1‑149 (MQ=255) ggTAAACCCGATCCTACAGGGGCAATGCGATCCATGTAGGAGCGGGTTTACCCGCGAAGAGGTCGGTACAGGCCACGCAAAACCACCAGGCACAAAAAAGCACCTCAAGAGGTGCTTTTTGTTTGCCGGCAATCTGCGCTTAGCGCtt > 5:294359/1‑148 (MQ=255) gTAAACCCGATCCTACAGGGGCAATGCGATCCATGTAGGAGcgggtttacccgcgaagaggccggcacagacaccgcaaatcactgacccgcttcgctcagaatcagcttgccattcttgtccagcggaatggtcgatcccggctcgc < 8:234853‑M2/148‑108 (MQ=255) ccGATCCTACAGGGGCAATGCGATCCATGTAGGAGcgggtttacccgcgaagaggccggcacagacaccgcaaatcactgacccgcttcgctcagaatcagcttgccattcttg < 5:8075‑M2/114‑80 (MQ=255) ccGATCCTACAGGGGCAATGCGATCCATGTAGGAGcgggtttacccgcgaagaggccggcacagacaccgcaaatcactgacccgcttcgctcagaatcagcttgccattcttg > 6:8075‑M2/1‑35 (MQ=255) ccGATCCTACAGGGGCAATGCGATCCATGTAGGAGcgggtttacccgcgaagaggccggaacagacaccgcaaatcactgacccgcttcgctcagaatcagcttgccattcttgtccagcggaatggtcgatcccggctcgcgatcca < 8:143040‑M2/148‑114 (MQ=255) cGATCCTACAGGGGCAATGCGATCCATGTAGGAGcgggtttacccgcgaagaggccggcacagacaccgcaaatcactgacccgcttcgctcagaatcagcttgccattcttgtccagcggaatggtcgatcccggctcgcgatccatc < 3:250358‑M2/149‑116 (MQ=255) aTCCTACAGGGGCAATGCGATCCATGTAGGAGCGGGTTTACCCGCGAAGAGGTCGGTACAGGCCACGCAAAACCACCAGGCACAAAAAAGCACCTCAAGAGGTGCTTTTTGTTTGCCGGCAATCTGCGCTTAGCGCTTCATGCTTTCTg < 6:294359/149‑1 (MQ=255) tCCAACTGGGGCAATGCCAACCATGAAGGAGCGGTTTAACCCGCGAAGAGGTCGGTACAGGCCACGCAAAACCACCAGGCACAAAAAAGCACCTCAAGAGGTGCTTTTTGTTTGCCGGCAATCTGCGCTTAGCGCTTCATGCTTTCTgg < 1:177906/149‑1 (MQ=255) cTACAGGGGCAATGCGATCCATGTAGGAGCGGGTTTACCCGCGAAGAGGTCGGTACAGGCCACGCAAAACCACCAGGCACAAAAAAGCACCTCAAGAGGTGCTTTTTGTTTGCCGGCAATCTGCGCTTAGCGCTTCATGCTTTCTgg > 6:293822/1‑147 (MQ=255) tACAGGGGCAATGCGATACATGTAGGAGCGGGTTTACCCGCGAAGAGGTCGGTACAGGCCACGCAAAACCACCAGGCACAAAAAAGCACCTCAAGAGGTGCTTTTTGTTTGCCGGCAATATGCGCTTAACGCTTCAAGCTTTCTGGCAg > 5:151987/1‑149 (MQ=255) aGGGGCAATGCGATCCATGTAGGAGCGGGTTTACCCGCGAAGAGGTCGGTACAGGCCACGCAAAACCACCAGGCACAAAAAATCACCTCTTGAGGTGCtttt < 1:295151/102‑1 (MQ=255) aGGGGCAATGCGATCAATGTAGGAGCGGGTTTACCCGCGAAGAGGACGGTACAGGCCACGCAAAACAACCAGGCACAAAAAAGCACATCTTGAGGAGCtttt > 2:295151/1‑102 (MQ=25) gggCAATGCGATCCATGTAGGAGCGGGTTTACCCGCGAAGAGGTCGGTACAGGCCACGCAAAACCACCAGGCACAAAAAAGCACCTCAAGAGGTGCTTTTTGTTTGCCGGCAATCTGCGCTTAGCGCTTCATGCTTTCTGGCAGGTGCg > 2:202060/1‑149 (MQ=255) ggCAATGCGATCCATGTAGGAGCGGGTTTACCCGCGAAGAGGTCGGTACAGGCCACGCAAAACCACCAGGCACAAAAAAGCACCTCAAGAGGTGCTTTTTGTTTGCCGGCAATCTGCGCTTAGCGCTTCATGCTTTCTGGCAGGTGCgg > 1:113431/1‑149 (MQ=255) cATGTAGGAGCGGGTTTACCCGCGAAGAGGTCGGTACAGGCCACGCAAAACCACCAGGCACAAAAAAGCACCTCAAGAGGTGCTTTTTGTTTGCCGGCAATCTGCGCTTAGCGCTTCATGCTTTCTGGCAGGTGCGGCTGGATGGcagt < 2:113431/149‑1 (MQ=255) aTGTAGGAGCGGGTTTACCCGCGAAGAGGTCGGTACAGGCCACGCAAAACCACCAGGCACAAAAAAGCACCTCAAGAGGTGCTTTTTGTTTGCCGGCAATCTGCGCTTAGCGCTTCATg > 1:135249/1‑119 (MQ=255) aTGTAGGAGCGGGTTTACCCGCGAAGAGGTCGGTACAGGCCACGCAAAACCACCAGGCACAAAAAAGCACCTCAAGAGGTGCTTTTTGTTTGCCGGCAATCTGCGCTTAGCGCTTCATg < 2:135249/119‑1 (MQ=255) aTGTAGGAGCGGGTTTACCCGCGAAGAGGTCGGTACAGGCCACGCAAAACCACCAGGCACAAAAAAGCACCTCAAGAGGTGCTTTTTGTTTGCCGGCAATCTGCGCTTAGCGCTTCATGCTTTCTGGCAGGTGCGGCTGGATGGcagt > 8:55027/1‑148 (MQ=255) tGTAGGAGCGGGTTTACCCGCGAAGAGGTCGGTACAGGCCACGCAAAACCACCAGGCACAAAAAAGCACCTCAAGAGGTGCTTTTTGTTTGCCGGCAATCTGCGCTTAGCGCTTCATGCTTTCTGGCAGGTGCGGCTGGATGGcagt > 6:294467/1‑147 (MQ=255) tAGGAGCGGGTTTACCCGCGAAGAGGTCGGTACAGGCCACGCAAAACCACCAGGCACAAAAAAGGACCTCAAGAGGTGCTTTTTGTTTGCCGGCAATCTGCGCTTAGCGCTTCATGCTTTCTGGCAGGTGCGGCTGGATGGcagtcag < 1:316734/148‑1 (MQ=255) aGCGGGTTTACCCGCGAAGAGGTCGGTACAGGCCACGCAAAACCACCAGGCACAAAAAAGCACCTCAAGAGGTGCTTTTTGTTTGCCGGCAATCTGCGCTTAGCGCTTCATGCTTTCTGGCAGGTGCGGCTGGATGGCAGTCAGTACCg > 2:50470/1‑149 (MQ=255) | GGATCGCGAGCCGGGATCGACCATTCCGCTGGACAAGAATGGCAAGCTGATTCTGAGCGAAGCGGGTCAGTGATTTGCGGTGTCTGTGCCGGCCTCTTCGCGGGTAAACCCGATCCTACAGGGGCAATGCGATCCATGTAGGAGCGGGTTTACCCGCGAAGAGGTCGGTACAGGCCACGCAAAACCACCAGGCACAAAAAAGCACCTCAAGAGGTGCTTTTTGTTTGCCGGCAATCTGCGCTTAGCGCTTCATGCTTTCTGGCAGGTGCGGCTGGATGGCAGTCAGTACCG > NC_002947/975079‑975369 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |