| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 975190 | 28 (0.540) | 5 (0.110) | 4/220 | NT | 17.0% | intergenic (+39/+130) | ycfJ/suhB | flagella biosyntheis regulator/bifunctional inositol monophosphatase/glycerol‑2‑phosphatase |
| ? | NC_002947 | = 975222 | 25 (0.570) | intergenic (+71/+98) | ycfJ/suhB | flagella biosyntheis regulator/bifunctional inositol monophosphatase/glycerol‑2‑phosphatase | |||||
TATTCCATCGGTGATCAGGTAGGCAAGGTGAAGATGGATCGCGAGCCGGGATCGACCATTCCGCTGGACAAGAATGGCAAGCTGATTCTGAGCGAAGCGGGTCAGTGATTTGCGGTGTCTGTGCCGGCCTCTTCGCGGGTAAACCCGATCCTACAGGGGCAATGCGATCCATGTAGGAGCGGGTTTACCCGCGAAGAGGTCGGTACAGGCCACGCAAAACCACCAGGCACAAAAAAGCACCTCAAGAGGTGCTTTTTGTTTGCCGGCAATCTGCGCTTAGCGCTTCATGCTTTC > NC_002947/975044‑975337 | tATTCCATCGGTGATCAGGTAGGCAAGGTGAAGATGGATCGCGAGCCGGGATCGACCATTCCGCTGGACAAGAATGGCAAGCTGATTCTGAGCGAAGCGGGTCAGTGATTTGCGGTGTCTGTGCCGGCCTCTTCGCGGGTAAACCCGAt > 6:243981/1‑149 (MQ=255) aTTCCATCGGTGATCAGGTAGGCAAGGTGAAGATGGATCGCGAGCCGGGATCGACCATTCCGCTGGACAAGAATGGCAAGCTGATTCTGAGCGAAGCGGGTCAGTGATTTGCGGTGTCTGTGCCGGCCTCTTCGCGGGTAAACCCGATc > 3:161941/1‑149 (MQ=255) cATCGGTGATCAGGTAGGCAAGGTGAAGATGGATCGCGAGCCGGGATCGACCATTCCGCTGGACAAGAATGGCAAGCTGATTCTGAGCGAAGCGGGTCAGTGATTTGCGGTGTCTGTGCCGGCCTCTTCGTGGGTAAACCCGATCCTa > 5:265860/1‑148 (MQ=255) cATCGGTGATCAGGTAGGCAAGGTGAAGATGGATCGCGAGCCGGGATCGACCATTCCGCTGGACAAGAATGGCAAGCTGATTCTGAGCGAAGCGGGTCAGTGATTTGCGGTGTCTGTGCCGGCCTCTTCGCGGGTAAACCCGATc < 8:32898/145‑1 (MQ=255) cATCGGTGATCAGGTAGGCAAGGTGAAGATGGATCGCGAGCCGGGATCGACCATTCCGCTGGACAAGAATGGCAAGCTGATTCTGAGCGAAGCGGGTCAGTGATTTGCGGTGTCTGTGCCGGCCTCTTCGCGGGTAAACCCGATc > 7:32898/1‑145 (MQ=255) cATCGGTGATCAGGTAGGCAAGGTGAAGATGGATCGCGAGCCGGGATCGACCATTCCGCTGGACAAGAATGGCAAGCTGATTCTGAGCGAAGCGGGTCAGTGATTTGCGGTGTCTGTGCCGGCCTCTTCGCAGGTAAACCCGATCCTa > 3:208093/1‑148 (MQ=255) ggTGATCAGGTAGGCAAGGTGAAGATGGATCGCGAGCCGGGATCGACCATTCCGCTGGACAAGAATGGCAAGCTGATTCTGAGCGAAGCGGGTCAGTGATTTGCGGTGTCTGTGCCGGCCTCTTCGCGGGTAAACCCGATCCTACAggg < 2:280406/149‑1 (MQ=255) gTGATCAGGTAGGCAAGGTGAAGATGGATCGCGAGCCGGGATCGACCATTCCGCTGGACAAGAATGGCAAGCTGATTCTGAGCGAAGCGGGTCAGTGATTTGCGGTGTCTGTGCCGGCCTCTTCGCAGGTAAACCCGATCCTACAgggg < 4:208093/149‑1 (MQ=255) tGATCAGGTAGGCAAGGTGAAGATGGATCGCGAGCCGGGATCGACCATTCCGCTGGACAAGAATGGCAAGCTGATTCTGAGCGAAGCGGGTCAGTGATTTGCGGTGTCTGTGCCGGCCTCTTCGCGGGTAAACCCGATCCTACAgggg > 5:66703/1‑148 (MQ=255) tGATCAGGTAGGCAAGGTGAAGATGGATCGCGAGCCGGGATCGACCATTCCGCTGGACAAGAATGGCAAGCTGATTCTGAGCGAAGCGGGTCAGTGATTTGCGGTGTCTGTGCCGGCCTCTTCGCGGGTAAACCCGATCCTACAgggg > 2:76043/1‑148 (MQ=255) aGGTAGGCAAGGTGAAGATGGATCGCGAGCCGGGATCGACCATTCCGCTGGACAAGAATGGCAAGCTGATTCTGAGCGAAGCGGGTCAGTGATTTGCGGTGTCTGTGCCGGCCTCTTCGCGGGTAAACCCGATCCTACAGGGGCAATg < 7:46052/148‑1 (MQ=255) aGGTAGGCAAGGTGAAGATGGATCGCGAGCCGGGATCGACCATTCCGCTGGACAAGAATGGCAAGCTGATTCTGAGCGAAGCGGGTCAGTGATTTGCGGTGTCTGTGCCGGCCTCTTCGCGGGTAAACCCGATCCTACAGGGGCAATGc > 8:139328/1‑149 (MQ=255) cAAGGTGAAGATGGATCGCGAGCCGGGATCGACCATTCCGCTGGACAAGAATGGCAAGCTGATTCTGAGCGAAGCGGGTCAGTGATTTGCGGTGTCTGTGCCGGCCTCTTCGTGGGTAAACCCGATCCTACAGGGGCAATGCGATCCAt < 6:265860/149‑1 (MQ=255) aGGTGAAGATGGATCGCGAGCCGGGATCGACCATTCCGCTGGACAAGAATGGCAAGCTGATTCTGAGCGAAGCGGGTCAGTGATTTGCGGTGTCTGTGCCGGCCTCTTCGCGGGTAAACCCGATCCTACAGGGGCAATGCGATCCAt < 3:281232/147‑1 (MQ=255) aGGTGAAGATGGATCGCGAGCCGGGATCGACCATTCCGCTGGACAAGAATGGCAAGCTGATTCTGAGCGAAGCGGGTCAGTGATTTGCGGTGTCTGTGCCGGCCTCTTCGCGGGTAAACCCGATCCTACAGGGGCAATGCGATCCAt > 4:281232/1‑147 (MQ=255) aGGTGAAGATGGATCGCGAGCCGGGATCGACCATTCCGCTGGACAAGAATGGCAAGCTGATTCTGAGCGAAGCGGGTCAGTGATTTGCGGTGTCTGTGCCGGCCTCTTCGCGGGTAAACCCGATCCTACAGGGGCAATGCGATCCATGt < 7:139328/149‑1 (MQ=255) ggTGAAGATGGATCGCGAGCCGGGATCGACCATTCCGCTGGACAAGAATGGCAAGCTGATTCTGAGCGAAGCGGGTCAGTGATTTGCGGTGTCTGTGCCGGCCTCTTCGCGGGTAAACCCGATCCTACAGGGGCAATGCGATCCATg > 5:79998/1‑147 (MQ=255) ggTGAAGATGGATCGCGAGCCGGGATCGACCATTCCGCTGGACAAGAATGGCAAGCTGATTCTGAGCGAAGCGGGTCAGTGATTTGCGGTGTCTGTGCCGGCCTCTTCGCGGGTAAACCCGATCCTACAGGGGCAATGCGATCCATGTa < 7:120133/149‑1 (MQ=255) gTGAAGATGGATCGCGAGCCGGGATCGACCATTCCGCTGGACAAGAATGGCAAGCTGATTCTGAGCGAAGCGGGTCAGTGATTTGCGGTGTCTGTGCCGGCCTCTTCGCGGGTAAACCCGATCCTACAGGGGCAATGCGATCCATGTAg < 6:66703/149‑1 (MQ=255) gATGGATCGCGAGCCGGGATCGACCATTCCGCTGGACAAGAATGGCAAGCTGATTCTGAGCGAAGCGGGTCAGTGATTTGCGGTGTCTGTGCCGGCCTCTTCGCGGGTAAACCCGctcctacatggatcgcattgcccctgtaggatcg < 3:250358‑M1/149‑35 (MQ=255) tGGATCGCGAGCCGGGATCGACCATTCCGCTGGACAAGAATGGCAAGCTGATTCTGAGCGAAGCGGGTCAGTGATTTGCGGTGTCTGTTCCGGCCTCTTCGCGGGTAAACCCGctcctacatggatcgcattgcccctgtaggatcgg < 8:143040‑M1/148‑36 (MQ=255) ggATCGCGAGCCGGGATCGACCATTCCGCTGGACAAGAATGGCAAGCTGATTCTGAGCGAAGCGGGTCAGTGATTTGCGGTGTCTGTGCCGGCCTCTTCGCGGGTAAACCCGATCCTACAGGGGCAATGCGATCCATGTAGGAGcgggt < 2:177906‑M2/149‑6 (MQ=255) aTCGCGAGCCGGGATCGACCATTCCGCTGGACAAGAATGGCAAGCTGATTCTGAGCGAAGCGGGTCAGTGATTTGCGGTGTCTGTGCCGGCCTCTTCGCGGGTAAACCCGa > 3:7332/1‑111 (MQ=255) aTCGCGAGCCGGGATCGACCATTCCGCTGGACAAGAATGGCAAGCTGATTCTGAGCGAAGCGGGTCAGTGATTTGCGGTGTCTGTGCCGGCCTCTTCGCGGGTAAACCCGa < 4:7332/111‑1 (MQ=255) gcgAGCCGGGATCGACCATTCCGCTGGACAAGAATGGCAAGCTGATTCTGAGCGAAGCGGGTCAGTGATTTGCGGTGTCTGTGCCGGCCTCTTCGCGGGTAAACCCGctcctacatggatcgcattgcccctgtaggatcgggtttac < 8:234853‑M1/148‑42 (MQ=255) cgAGCCGGGATCGACCATTCCGCTGGACAAGAATGGCAAGCTGATTCTGAGCGAAGCGGGTCAGTGATTTGCGGTGTCTGTGCCGGCCTCTTCGCGGGTAAACCCGATCCTACAGGGGCAATGCGATCCATGTAGGAGcgggtttaccc > 4:161941‑M2/1‑138 (MQ=255) cGGGTTCGACCATTCCGCTGGACAAGAATGGCAAGCTGATTCTGAGCCACGCGGGTCAGTGATTTGCGGTGTCTGTGCCGGCCTCTTCGCGGGTAACCCCGATCCTACAGGGGCAATGCGATCCATGTAGGAGcgggtttacccgcgaa > 4:95916‑M2/1‑133 (MQ=255) cGGGATCGACCATTCCGCTGGACAAGAATGGCAAGCTGATTCTGAGCGAAGCGGGTCAGTGATTTGCGGTGTCTGTGCCGGCCTCTTCGCGGGTAAACCCGATCCTACAGGGGCAATGCGATCCATGTAGGAGcgggtttacccgcgaa > 6:79998‑M2/1‑133 (MQ=255) gggATCGACCATTCCGCTGGACAAGAATGGCAAGCTGATTCTGAGCGAAGCGGGTCAGTGATTTGCGGTGTCTGTGCCGGCCTCTTCGCGGGTAAACCCGATCCTACAGGGGCAATGCGATCCATGTAGGAGcgggtttacccgcg < 8:103877‑M2/146‑15 (MQ=255) tCGACCATTCCGCTGGACAAGAATGGCAAGCTGATTCTGAGCGAAGCGGGTCAGTGATTTGCGGTGTCTGTGCCGGCCTCTTCGCGGGTAAACCCGATCCTACAGGGGCAATGCGATCCATGTAGGAGCGGGTTTACCCGCGAAGAGGt > 6:78211/1‑149 (MQ=255) gACCATTCCGCTGGACAAGAATGGCAAGCTGATTCTGAGCGAAGCGGGTCAGTGATTTGCGGTGTCTGTGCCGGCCTCTTCGCGGGTAAACCCGATCCTACAGGGGCAATGCGATCCATGTAGGAGCGGGTTTACCCGCGAAGAGGTCg > 2:67227/1‑149 (MQ=255) cGCTGGACAAGAAAGGCAAGCTGATTCTGACCGAAGCGGGTCAGTGATTTGCGGTGTCTGTGCCGGCCTCTTCGCGGGTAAACCCGATCCTACATGGGCGATGCGATCCATGTAGGAGCGGGTTTACCCGCGAAGAGGTCGGTACAGGc > 5:270574/1‑149 (MQ=255) cAAGAATGGCAAGCTGATTCTGAGCGAAGCGGGTCAGTGATTTGCGGTGTCTGTGCCGGCCTCTTCGCGGGTAAACCCGctcctacatggatcgcattgcccctgtaggatcgg < 5:8075‑M1/114‑36 (MQ=255) cAAGAATGGCAAGCTGATTCTGAGCGAAGCGGGTCAGTGATTTGCGGTGTCTGTGCCGGCCTCTTCGCGGGTAAACCCGctcctacatggatcgcattgcccctgtaggatcgg > 6:8075‑M1/1‑79 (MQ=255) cAAGCTGATTCTGAGCGACGCGGGTCAGTGATTTGCGGTGTCTGTGCCGGCCTCTTCGCGGGTAAACCCGATCCTACAGGGGCAATGCGATCCATGTAGGAGCGGGTTTACCCGCGAAGAGGTCGGTACAGGCCACGCAAAACCACCAg < 5:243981/149‑1 (MQ=255) aGCGAAGCGGGTCAGTGATTTGCGGTGTCTGTGCCGGCCTCTTCGCGGGTAAACCCGATCCTACAGGGGCAATGCGATCCATGTAGGAGCGGGTTTACCCGCGAAGAGGTCGGTACAGGCCACGCAAAACCACCAGGCACAAAAAAGc < 7:103877/148‑1 (MQ=255) ggTCAGTTATTTGCGGTGGCTGGCCCGGCCTCTTCGGGGTTACACCCGACCCTACCGGGGCAATGCTTTCATTGTCGGTGGGGTTTAACCCGCGAAGAGGTCGGTACAGGCCACGCAAAACCACCAGGCACAAAAAAGCACCTCAagag < 4:314993/149‑1 (MQ=255) cGGCCTCTTCGCGGGTAAACCCGATCCTACAGGGGCAATGCGATCCATGTAGGAGCGGGTTTACCCGCGAAGAGGTCGGTACAGGCCCCGCAAAACCACCAGGCACAAAAAAGCACCTCAAGAGGTGCTTTTTGTTTGCCGGCAATCTg > 7:281454/1‑149 (MQ=255) gCCTCTTCGCGGGTAAACCCGATCCTACAGGGGCAATGCGATCCATGTAGGAGCGGGTTTACCCGCGAAGAGGTCGGTACAGGCCACGCAAAACCACCAGGCACAAAAAAGCACCTCAag > 3:162203/1‑120 (MQ=255) gCCTCTTCGCGGGTAAACCCGATCCTACAGGGGCAATGCGATCCATGTAGGAGCGGGTTTACCCGCGAAGAGGTCGGTACAGGCCACGCAAAACCACCAGGCACAAAAAAGCACCTCAAGAGGTGCTTTTTGTTTGCCGGCAATCTgcg > 2:215485/1‑149 (MQ=255) ctctTCGCGGGTAAACCCGATCCTACAGGGGCAATGCGATCCATGTAGGAGCGGGTTTACCCGCGAAGAGGTCGGTACAGGCCACGCCAAACCACCAGGCACAAAAAAGCACCTCAAGAGGTGCGTGTTGTTTGCCGGCAATCTGCGCt > 7:50811/1‑149 (MQ=255) ttCGCGGGTAAACCCGctcctacatggatcgcattgcccctgtaggatcgggtttacccgcgaagaggccggcacagacaccgcaaatcactgacccgcttcgctcagaatcagcttgccattcttgtccagcggaatggtcgatcccg > 6:79998‑M1/1‑16 (MQ=255) ttCGCGGGTAAACCCGctcctacatggatcgcattgcccctgtaggatcggggttacccgcgaagaggccggcacagacaccgcaaatcactgacccgcgtggctcagaatcagcttgccattcttgtccagcggaatggtcgaacccg > 4:95916‑M1/1‑16 (MQ=255) cgcgGGTAACCCCGATCCTCCCGGGGCAATGCCATCCATGTAGGAGCGGGTTAACCCGCGAAGAGGTCGGTACAGGCCACGCAAAACCACCAGGCACAAAAAAGCACCTCAAGAGGTGCTTTTTGTTTGCCGGCAATCTGCGCTTAg < 5:78211/147‑1 (MQ=255) cgcgGGTAAACCCGctcctacatggatcgcattgcccctgtaggatcgggtttacccgcgaagaggccggcacagacaccgcaaatcactgacccgcttcgctcagaatcagcttgccattcttgtccagcggaatggtcgatccc < 8:103877‑M1/146‑133 (MQ=255) gggTAAACCCGctcctacatggatcgcattgcccctgtaggatcgggtttacccgcgaagaggccggcacagacaccgcaaatcactgacccgcttcgctcagaatcagcttgccattcttgtccagcggaatggtcgatcccggctcg > 4:161941‑M1/1‑11 (MQ=255) gggTAAACCCGATCCTACAGGGGCAATGCGATCCATGTAGGAGCGGGTTTACCCGCGAAGAGGTCGGTACAGGCCACGCAAAACCACCAGGCACAAAAAAGCACCTCAAGAGGTGCTTTTTGTTTGCCGGCAATCTGCGCTTAGCGCtt > 5:130056/1‑149 (MQ=255) ggTAAACCCGATCCTACAGGGGCAATGCGATCCATGTAGGAGCGGGTTTACCCGCGAAGAGGTCGGTACAGGCCACGCAAAACCACCAGGCACAAAAAAGCACCTCAAGAGGTGCTTTTTGTTTGCCGGCAATCTGCGCTTAGCGCtt > 5:294359/1‑148 (MQ=255) gTAAACCCGATCCTACAGGGGCAATGCGATCCATGTAGGAGcgggtttacccgcgaagaggccggcacagacaccgcaaatcactgacccgcttcgctcagaatcagcttgccattcttgtccagcggaatggtcgatcccggctcgc < 8:234853‑M2/148‑108 (MQ=255) aCCCGctcctacatggatcgcattgcccctgtaggatcgggtttacccgcgaagaggccggcacagacaccgcaaatcactgacccgcttcgctcagaatcagcttgccattcttgtccagcggaatggtcgatcccggctcgcgatcc < 2:177906‑M1/149‑145 (MQ=255) ccGATCCTACAGGGGCAATGCGATCCATGTAGGAGcgggtttacccgcgaagaggccggcacagacaccgcaaatcactgacccgcttcgctcagaatcagcttgccattcttg > 6:8075‑M2/1‑35 (MQ=255) ccGATCCTACAGGGGCAATGCGATCCATGTAGGAGcgggtttacccgcgaagaggccggcacagacaccgcaaatcactgacccgcttcgctcagaatcagcttgccattcttg < 5:8075‑M2/114‑80 (MQ=255) ccGATCCTACAGGGGCAATGCGATCCATGTAGGAGcgggtttacccgcgaagaggccggaacagacaccgcaaatcactgacccgcttcgctcagaatcagcttgccattcttgtccagcggaatggtcgatcccggctcgcgatcca < 8:143040‑M2/148‑114 (MQ=255) cGATCCTACAGGGGCAATGCGATCCATGTAGGAGcgggtttacccgcgaagaggccggcacagacaccgcaaatcactgacccgcttcgctcagaatcagcttgccattcttgtccagcggaatggtcgatcccggctcgcgatccatc < 3:250358‑M2/149‑116 (MQ=255) | TATTCCATCGGTGATCAGGTAGGCAAGGTGAAGATGGATCGCGAGCCGGGATCGACCATTCCGCTGGACAAGAATGGCAAGCTGATTCTGAGCGAAGCGGGTCAGTGATTTGCGGTGTCTGTGCCGGCCTCTTCGCGGGTAAACCCGATCCTACAGGGGCAATGCGATCCATGTAGGAGCGGGTTTACCCGCGAAGAGGTCGGTACAGGCCACGCAAAACCACCAGGCACAAAAAAGCACCTCAAGAGGTGCTTTTTGTTTGCCGGCAATCTGCGCTTAGCGCTTCATGCTTTC > NC_002947/975044‑975337 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |