| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 1978503 = | 57 (1.100) | 4 (0.080) | 4/250 | NT | 7.0% | coding (2167/2241 nt) | PP_1770 | 3‑phosphoshikimate 1‑carboxyvinyltransferase |
| ? | NC_002947 | 1978559 = | 52 (1.050) | coding (2223/2241 nt) | PP_1770 | 3‑phosphoshikimate 1‑carboxyvinyltransferase | |||||
GCGGGCAATCAGCCCGGCGACCGTGCCCTTGCCCGAGCCGCTTGGTCCGTCGATGGTGATAACCGGTGCCATTGAATTCACGACTTGCCCTCTTCTGCCACGCGAATCCCCACTTCGGCGCACAGCGCCAGGAAGTTGGGGAACGAGGTGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/1978654‑1978503‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gtggcAGAAGAGGGCAAGTCGTGAATTCAATGGCACCGGTTATCACCATCGACGGACCAAGCGGCTCGGGCAAGGGCACGGTCGCCGGGCTGATTGCCCGCGAGCTGGGCTGGAAGCTGCTGGACTCCGGCGCGCTGTATCGCTTGCTGGC > NC_002947/1978559‑1978704 GCGGGCAATCAGCCCGGCGACCGTGCCCTTGCCCGAGCCGCTTGGTCCGTCGATGGTGATAACCGGTGCCATTGAACTCACGACTTGCCCTCTTCTGCCACGCGAATCCCCACTTCGGCGCACAGCGCCAGGAAGTTGGGGAACGAGG < 8:127200/148‑1 GGGCAATCAGCCCGGCGACCGTGCCCTTGCCCGAGCCGCTTGGTCCGTCGATGGTGATAACCGGTGCCATTGAATTCACGACTTGCCCTCTTCTGCCACGCGAATCCCCACTTCGGCGCACAGCGCCAGGAAGTTGGGGAACGAGGTGG < 1:180293/149‑1 TCTTCTGCCACGCGAATCCCCACTTCGGCGCACAGCGCCAGGAAGTTGGGGAACGAGGTGGCAGAAGAGGGCAAGTCGTGAATTCAATGGCACCGGTTATCACCATCGACGGACCAAGCGGCTCGGGCAAGGGCACGGTCGCCGGGCT > 1:28039/1‑148 CTGCCACGCGAATCCCCACTTCGGCGCACAGCGCCAGGAAGTTGGGGAACGAGGTGGCAGAAGAGGGCAAGTCGTGAATTCAATGGCACCGGTTATCACCATCGACGGACCAAGCGGCTCGGGCAAGGGCACGGTCGCCGGGCTGA < 2:28039/146‑1 CCCACTTCGGCGCACAGCGCCAGGAAGGTGGGGAACGAGGTGGCAGAAGAGGGCAAGTCGTGAATTCAATGGCACCGGTTATCACCAGCGCCGGACCACGCGGCTCGGGCAAGGGCACGGTCGCCGGGCTGATTTCCCGCGAGCTGGGC > 1:279599/1‑149 TTGGGGAACGAGGTGGCAGAAGAGGGCAAGGGGTGAATTCAATGGCACCGGTTATCACCTTCGACGGACCACGCGGCTCGGGCAAGGGCACGGTCGCCGGGCTGATTGCCCGCGAGCTGGGCTGGAAGCTGCTGGACTCCGGCGCGCT < 2:279599/148‑1 GGCAGAAGAGGGCAAGTCGTGAATTCAATGGCACCGGTTATCACCATCGACGGACCAAGCGGCTCGGGCAAGGGCACGGTCGCCGGGCTGATTGCCCGCGAGCTGGGCTGGAAGCTGCTGGACTCCGGCGCGCTGTATCGCTTGCTGG > 3:199462/1‑148 GGCAGAAGAGGGCAAGGCGTGAATTCAATGGCACCGGTTATCACCATCGACGGACCCAGCGGCTCGGGCAAGGGCACGGGCGCCGGGCTGATTGCCCGCGAGCTGGGCTGGAAGCTGCTGGACTCCGGCGCGCTGTATCGCTTGCTGGC < 3:209911/149‑1 GCGGGCAATCAGCCCGGCGACCGTGCCCTTGCCCGAGCCGCTTGGTCCGTCGATGGTGATAACCGGTGCCATTGAATTCACGACTTGCCCTCTTCTGCCACGCGAATCCCCACTTCGGCGCACAGCGCCAGGAAGTTGGGGAACGAGGTGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/1978654‑1978503‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gtggcAGAAGAGGGCAAGTCGTGAATTCAATGGCACCGGTTATCACCATCGACGGACCAAGCGGCTCGGGCAAGGGCACGGTCGCCGGGCTGATTGCCCGCGAGCTGGGCTGGAAGCTGCTGGACTCCGGCGCGCTGTATCGCTTGCTGGC > NC_002947/1978559‑1978704 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |