| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 2129966 = | 54 (1.050) | 5 (0.100) | 5/244 | NT | 10.1% | coding (2233/2496 nt) | fimD | type I pili subunit FimD |
| ? | NC_002947 | 2130009 = | 38 (0.780) | coding (2190/2496 nt) | fimD | type I pili subunit FimD | |||||
GCGGTTATGCACTTTTGCCCTACCTGCAACCGTACCGGACCAATTCGGTGGTCCTGGAAACCGACCGTCTCGATCCTGATGTGGAAATCGACAACGGCATCGCCCAGGTAGTGCCTCGCCAGGGTGCAGTGGTCAAGCACCGCTTCGAGGCAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/2130118‑2129966‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgaggcacTACCTGGGCGATGCCGTTGTCGATTTCCACATCAGGATCGAGACGGTCGGTTTCCAGGACCACCGAATTGGTCCGGTACGGTTGCAGGTAGGGCAAAAGTGCATAACCGCGTGAATTGGTGCGCGTACCCGTTGCGTTTTG > NC_002947/2130009‑2130149 GCGGTTATGCACTTTTGCCCTACCTGCAACCGTACCGGACCAATTCGGTGGTCCTGGAAACCGACCGTCTCGATCCTGATGTGGAAATCGACAACGGCATCGCCCAGGTAGTGCCTCGCCAGGGTGCAGTGGTCAAGCACCGCTTCGAG > 3:292867/1‑149 TGCAACCGTACCGGACCAATTCGGTGGTCCTGGAAACCGACCGTCTCGATCCTGATGTGGAAATCGACAACGGCATCGCCCAGGTAGTGCCTCGCCAGGGTGCAGTGGTCAAGCACCGCTTCGAGGC > 7:221494/1‑127 TGCAACCGTACCGGACCAATTCGGTGGTCCTGGAAACCGACCGTCTCGATCCTGATGTGGAAATCGACAACGGCATCGCCCAGGTAGTGCCTCGCCAGGGTGCAGTGGTCAAGCACCGCTTCGAGGC < 8:221494/127‑1 TCTCGATCCTGATGTGGAAATCGACAACGGCATCGCCCAGGTAGTGCCTCGCCAGGGTGCAGTGGTCAAGCACCGCTTCGA > 7:207022/1‑81 TCTCGATCCTGATGTGGAAATCGACAACGGCATCGCCCAGGTAGTGCCTCGCCAGGGTGCAGTGGTCAAGCACCGCTTCGA < 8:207022/81‑1 CAGGTAGTGCCTCGCCAGGGTGCAGTGGTCAAGCACCGCTTCGAGGCACTACCTGGGCGATGCCGTTGTCGATTTCCACATCAGGATCGAGACGGTCGGTTTCCAGGACCACCGAATTGGTCCGGTACGGTTGCAGGTA > 1:145221/1‑139 CAGGTAGTGCCTCGCCAGGGTGCAGTGGTCAAGCACCGCTTCGAGGCACTACCTGGGCGATGCCGTTGTCGATTTCCACATCAGGATCGAGACGGTCGGTTTCCAGGACCACCGAATTGGTCCGGTACGGTTGCAGGTA < 2:145221/139‑1 GCCTCGCCAGGGTGCAGTGGTCAAGCACCGCTTCGAGGCACTACCTGGGCGATGCCGTTGTCGATTTCCACATCAGGATCGAGACGGTCGGTTTCCAGGACCACCGAATTGGTCCGGTACGGTTGCAGGTAGGGCAAAAGTGCATAACC > 4:259596/1‑149 CTCGCCAGGGTGCAGTGGTCAAGCACCGCTTCGAGGCACTACCTGGGCGATGCCGTTGTCGATTTCCACATCAGGATCGAGACGGTCGGTTTCCAGGACCACCGAATTGGTCCGGTACGGTTGCAGGTAGGGCAAAAGTGCATAACCGC > 5:239514/1‑149 CACCGCTTCGAGGCACTACCTGGGCGATGCCGTTGTCGATTTCCACATCAGGATCGAGACGGTCGGTTTCCAGGACCACCGAATTGGTCCGGTACGGTTGCAGGTAGGGCAAAAGTGCATAACCGCGTGAATTGGTGCGCGTACCCGTT < 3:259596/149‑1 CGAGGCACTACCTGGGCGATGCCGTTGTCGATTTCCACATCAGGATCGAGACGGTCGGTTTCCAGGACCACCGAATTGGTCCGGTACGGTTGCAGGTAGGGCAAAAGTGCATAACCGCGTGAATTGGTGCGCGTACCCGTTGCGTTTTG < 3:188319/149‑1 GCGGTTATGCACTTTTGCCCTACCTGCAACCGTACCGGACCAATTCGGTGGTCCTGGAAACCGACCGTCTCGATCCTGATGTGGAAATCGACAACGGCATCGCCCAGGTAGTGCCTCGCCAGGGTGCAGTGGTCAAGCACCGCTTCGAGGCAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/2130118‑2129966‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgaggcacTACCTGGGCGATGCCGTTGTCGATTTCCACATCAGGATCGAGACGGTCGGTTTCCAGGACCACCGAATTGGTCCGGTACGGTTGCAGGTAGGGCAAAAGTGCATAACCGCGTGAATTGGTGCGCGTACCCGTTGCGTTTTG > NC_002947/2130009‑2130149 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |