New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	2129966 =	54 (1.050)	5 (0.100)	5/244	NT	10.1%	coding (2233/2496 nt)	fimD	type I pili subunit FimD
	?	NC_002947	2130009 =	38 (0.780)					coding (2190/2496 nt)	fimD	type I pili subunit FimD

ACCATGCCCAGTTGGGTACCGTTCTCGGCCAGCACCTGGGCCCCAAAGGGCAGCGGTTGACCCTGGGTATCGTGCAGGGTCAGTACAAGGCGTGAAACGCGGCGTGCCTCGAAGCGGTGCTTGACCACTGCACCCTGGCGAGGCACTACCTGGGCGATGCCGTTGTCGATTTCCACATCAGGATCGAGACGGTCGGTTTCCAGGACCACCGAATTGGTCCGGTACGGTTGCAGGTAGGGCAAAAGTGCATAACCGCGTGAATTGGTGCGCGTACCCGTTGCGTTTTGCAGGCCCA  >  NC_002947/2129863‑2130157                                                                                                                                                   |                                                                                                                                                     aCCATGCCCAGTTGGGTACCGTTCTCGGCCAGCACCTGGGCCCCAAAGGGCAGCGGTTGACCCTGGGTATCGTGCAGGGTCAGTACAAGGCGTGAAACGCGGCGTGCCTCGAAGCGGTGCTTGACCACTGCACCCTGGCGAGGCACTAc                                                                                                                                                    <  5:135994/149‑1 (MQ=255) aCCATGCCCAGTTGGGTACCGTTCTCGGCCAGCACCTGGGCCCCAAAGGGCAGCGGTTGACCCTGGGTATCGTGCAGGGTCAGTACAAGGCGTGAAACGCGGCGTGCCTCGAAGCGGTGCTTGACCACTGCACCCTGGCGAGGCACTAc                                                                                                                                                    <  7:295898/149‑1 (MQ=255)  ccATGCCCAGTTGGGTACCGTTCTCGGCCAGCACCTGGGCCCCAAAGGGCAGCGGTTGACCCTGGGTATCGTGCAGGGTCAGTACAAGGCGTGAAACGCGGCGTGCCTCGAAGCGGTGCTTGACCACTGCACCCTGGCGAGGCACTAcc                                                                                                                                                   >  6:99774/1‑149 (MQ=255)       cccAGTTGGGTACCGTTCTCGGCCAGCACCTGGGCCCCAAAGGGCAGCGGTTGACCCTGGGTATCGTGCAGGGTCAGTACAAGGCGTGAAACGCGGCGTGCCTCGAAGCGGTGCTTGACCACTGCACCCTGGCGAGGCACTACCTGGGc                                                                                                                                              <  2:50759/149‑1 (MQ=255)              tacctgcaaccgtaccggaccaattcggtggtcctggaaaccgaccgtctcgatcctgatgtggaaatcgacaacggcatcgcccaggtaGTGCCTCGAAGCGGTGCTTGACCACTGCACCCTGGCGAGGCACTACCTg                                                                                                                                                 >  1:145221‑M1/91‑139 (MQ=255)              tacctgcaaccgtaccggaccaattcggtggtcctggaaaccgaccgtctcgatcctgatgtggaaatcgacaacggcatcgcccaggtaGTGCCTCGAAGCGGTGCTTGACCACTGCACCCTGGCGAGGCACTACCTg                                                                                                                                                 <  2:145221‑M1/49‑1 (MQ=255)                gTACCGTTCTCGGCCAGCACCTGGGCCCCAAAGGGCAGCGGTTGACCCTGGGTATCGTGCAGGGTCAGTACAAGGCGTGAAACGCGGCGTGCCTCGAAGCGGTGCTTGACCACTGCACCCTGGCGAGGCACTACCTGGGCGATGCCGtt                                                                                                                                     >  3:34095/1‑149 (MQ=255)                gTACCGTTCTCGGCCAGCACCTGGGCCCCAAAGGGCAGCGGTTGACCCTGGGTATCGTGCAGGGTCAGTACAAGGCGTGAAACGCGGCGTGCCTCGAAGCGGTGCTTGACCACTGCACCCTGGCGAGGCACTACCTGGGCGATGCCGtt                                                                                                                                     <  4:32556/149‑1 (MQ=255)                 tACCGTTCTCGGCCAGCACCTGGGCCCCAAAGGGCAGCGGTTGACCCTGGGTATCGTGCAGGGTCAGTACAAGGCGTGAAACGCGGCGTGCCTCGAAGCGGTGCTTGACCACTGCACCCTGGCGAGGCACTACCTGGGCGATGCCGTTg                                                                                                                                    >  2:104949/1‑149 (MQ=255)                   ccGTTCTCGGCCAGCACCTGGGCCCCAAAGGGCAGCGGTTGACCCTGGGTATCGTGCAGGGTCAGTACAAGGCGTGAAACGCGGCGTGCCTCGAAGCGGTGCTTGACCACTGCACCCTGGCGAGGCACTACCTGGGCGATGCCGTTGTc                                                                                                                                  <  4:34095/149‑1 (MQ=255)                    cGTTCTCGGCCAGCACCTGGGCCCCAAAGGGCAGCGGTTGACCCTGGGTATCGTGCAGGGTCAGTACAAGGCGTGAAACGCGGCGTGCCTCGAAGCGGTGCTTGACCACTGCACCCTGGCGAGGCACTACCTGGGCGATGCCGTTGTc                                                                                                                                  >  5:334733/1‑148 (MQ=255)                           ggCCAGCACCTGGGCCCCAAAGGGCAGCGGTTGACCCTGGGTATCGTGCAGGGTCAGTACAAGGCGTGAAACGCGGCGTGCCTCGAAGCGGTGCTTGACCACTGCACCCTGGCGAGGCACTACCTGGGCGATGCCGTTGTCGATTTc                                                                                                                            <  6:334733/147‑1 (MQ=255)                           ggCCAGCACCTGGGCCCCAAAGGGCAGCGGTTGACCCTGGGTATCGTGCAGGGTCAGTACAAGGCGTGAAACGCGGCGTGCCTCGAAGCGGTGCTTGACCACTGCACCCTGGCGAGGCACTACCTGGGCGATGCCGTTGTCGATTTCca                                                                                                                          >  8:17111/1‑149 (MQ=255)                             ccAGCACCTGGGCCCCAAAGGGCAGCGGTTGACCCGGGGTATCGTGCAGGGTCAGTACAAGGCGTGAAACGCGGCGTGCCTCGAAGCGGTGCTTGACCACTGCACCCTGGCGAGGCACTACCTGGGCGATGCCGTTGTCGATTTCcaca                                                                                                                        >  1:250906/1‑149 (MQ=255)                                 cACCTGGGCCCCAAAGGGCAGCGGTTGACCCTGGGTATCGTGCAGGGTCAGTACAAGGCGTGAAACGCGGCGTGCCTCGAAGCGGTGCTTGACCACTGCACCCTGGCGAGGCACTACCTGGGCGATGCCGTTGTCGATTTCCACATCAg                                                                                                                    >  1:100046/1‑149 (MQ=255)                                 cACCTGCGCCGCAAAGGGCAGCGGTTGACCCTGGGTATCGTGCAGGGTCAGTACAAGGCGTGAAACGCGGCGTGCCTCGAAGCGGTGCTTGACCACTGCACCCTGGCGAGGCACTCCCTGGGCGATGCCGTTGTCGATTTCCACATCAg                                                                                                                    >  7:304223/1‑149 (MQ=255)                                      gggCCCCAAAGGGCAGCGGTTGACCCTGGGTATCGTGCAGGGTCAGTACAAGGCGTGAAACGCGGCGTGCCTCGAAGCGGTGCTTGACCACTGCACCCTGGCGAGGCACTACCTGGGCGATGCCGTTGTCGATTTCCACATCAGGATc                                                                                                                >  4:46976/1‑148 (MQ=255)                                       ggCCCCAAAGGGCAGCGGTTGACCCTGGGTATCGTGCAGGGTCAGTACAAGGCGTGAAACGCGGCGTGCCTCGAAGCGGTGCTTGACCACTGCACCCTGGCGAGGCACTACCTGGGCGATGCCGTTGTCGATTTCCACATCAGGATc                                                                                                                <  1:104949/147‑1 (MQ=255)                                          cccAAAGGGCAGCGGTTGACCCTGGGTATCGTGCAGGGTCAGTACAAGGAGTGAAACGCGGCGTGCCTCGAAGCGGTGCTTGACCACTGCACCCTGGCGAGGCACTACCTGGGCGATGCCGTTGTCGATTTCCACATCAGGATCGAGAc                                                                                                           >  4:292867/1‑149 (MQ=255)                                              aaGGGCAGCGGTTGACCCTGGGTATCGTGCAGGGTCAGTACAAGGCGTGAAACGCGGCGTGCCTCGAAGCGGTGCTTGACCACTGCACCCTGGCGAGGCACTACCTGGGCGATGCCGTTGTCGATTTCCACATCAGGATCGAGAcggtc                                                                                                       <  2:100046/149‑1 (MQ=255)                                                    aGCGGTTGACCCTGGGTATCGTGCAGGGTCAGTACAAGGCGTGAAACGCGGCGTGCCTCGAAGCGGTGCTTGACCACTGCACCCTGGCGAGGCACTACCTGGGCGATGCCGTTGTCGATTTCCACATCAGGATCGAGACGGTCGGTTTc                                                                                                 >  2:296619/1‑149 (MQ=255)                                                      cGGTTGACCCTGGGTATCGTGCAGGGTCAGTACAAGGCGTGAAACGCGGCGTGCCTCGAAGCGGTGCTTGACCACTGCACCCTGGCGAGGCACTACCTGGGCGATGCCGTTGTCGATTTCCACATCAGGATCGAGACGGTCGGTTTCCa                                                                                               <  7:17111/149‑1 (MQ=255)                                                              ccTGGGTATCGTGCAGGGTCAGTACAAGGCGTGAAACGCGGCGTGCCTCGAAGCGGTGCTTGACCACTGCACCCTGGCGAGGCACTACCTGGGCGATGCCGTTGTCGATTTCCACATCAGGATCGAGAcggt                                                                                                        >  1:118149/1‑132 (MQ=255)                                                              ccTGGGTATCGTGCAGGGTCAGTACAAGGCGTGAAACGCGGCGTGCCTCGAAGCGGTGCTTGACCACTGCACCCTGGCGAGGCACTACCTGGGCGATGCCGTTGTCGATTTCCACATCAGGATCGAGAcggt                                                                                                        <  2:118149/132‑1 (MQ=255)                                                              ccTGGGTATCGTGCAGGGTCAGTACAAGGCGTGAAACGCGGCGTGCCTCGAAGCGGTGCTTGACCACTGCACCCTGGCGAGGCACTACCTGGGCGATGCCGTTGTCGATTTCCACATCAGGATCGAGACGGTCGGTTTCCAGGaccacc                                                                                       >  4:105602/1‑149 (MQ=255)                                                                tGGGTATCGTGCAGGGTCAGTACAAGGCGTGAAACGCGGCGTGCCTCGAAGCGGTGCTTGACCACTGCACCCTGGCGAGGCACTACCTGGGCGATGCCGTTGTCGATTTCCACATCAGGATCGAGACGGTCGGTTTCCAGGACCACCg                                                                                      >  7:216714/1‑148 (MQ=255)                                                                    tATCGTGAAGGGTCAGTACAAGGCGTGAAACGCGGCGTGCCTCGAAGCGGTGCTTGACCACTGCACCCTGGCGAGGCACTACCTGGGCGATGCCGTTGTCGATTTCCACATCAGGATCGAGACGGTCGGTTTCCAGGACCACCGAATTg                                                                                 >  1:150180/1‑149 (MQ=255)                                                                        gTGCAGGGTCAGTACAAGGCGTGAAACGCGGCGTGCCTCGAAGCGGTGCTTGACCACTGCACCCTGGCGAGGCACTACCTGGGCGATGCCGTTGTCGATTTCCACATCAGGATCGAGACGGTCGGTTTCCAGGACCACCGAATTGGTcc                                                                             <  1:296619/149‑1 (MQ=255)                                                                        gTGCAGGGTCAGTACAAGGCGTGAAACGCGGCGTGCCTCGAAGCGGTGCTTGACCACTGCACCCTGGCGAGGCACTACCTGGGCGATGCCGTTGTCGATTTCCACATCAGGATCGAGACGGTCGGTTTCCAGGACCACCGAATTGGTcc                                                                             <  5:99774/149‑1 (MQ=255)                                                                        gTGCAGGGTCAGTACAAGGCGTGAAACGCGGCGTGCCTCGAAGCGGTGCTTGACCACTGCACCCTGGCGAGGCACTACCTGGGCGATGCCGTTGTCGATTTCCACATCAGGATCGAGACGGTCGGTTTCCAGGACCACCGAATTGGTcc                                                                             <  3:105602/149‑1 (MQ=255)                                                                        gTGCAGGGTCAGTACAAGGCGTGAAACGCGGCGTGCCTCGAAGCGGTGCTTGACCACTGCACCCTGGCGAGGCACTACCTGGGCGATGCCGTTGTCGATTTCCACATCAGGATCGAGACGGTCGGTTTCCAGGACCACCGAATTGGTc                                                                              <  3:46976/148‑1 (MQ=255)                                                                         tGCAGGGTCAGTACAAGGCGTGAAACGCGGCGTGCCTCGAAGCGGTGCTTGACCACTGCACCCTGGCGAGGCACTACCTGGGCGATGCCGTTGTCGATTTCCACATCAGGATCGAGACGGTCGGTTTCCAGGACCACCGAATTGGTCCg                                                                            >  4:188319/1‑149 (MQ=255)                                                                         cccAGGGTCAGTACAAGGCGTGAAACGCGGCGTGCCTCGAAGCGGTGCTTGACCACTGCACCCTGGCGAGGCACTACCTGGGCGATGCCGTTGTCGATTTCCACATCAGGATCGAGACGGTCGGTCTCCAGGACCACCGAATTGGTCCg                                                                            <  8:111730/147‑1 (MQ=255)                                                                               gTCAGTACAAGGCGTGAAACGCGGCGTGCCTCGAAGCGGTGCTTGACCACTGCACCCTGGCGAGGCACTACCTGGTCGATGCCGTTGTCGATTTCCACATCAGGATCGAGACGGTCGGTTTCCAGGACCACCGAATTGGTCCGGTACgg                                                                      <  2:3192/149‑1 (MQ=255)                                                                                  aGTACAAGGCGTCAAACGCGGCGTGCCTCGAAGCGGTGCTTGACCACTGCACCCTGGCGAGGCACTACCTGGTCGATGCCGTTGTCGATTTCCACATCAGGATCGAGACGGTCGGTTTCCAGGACCACCGAATTGGTCCGGTACGGtt                                                                    <  8:156781/148‑1 (MQ=255)                                                                                         ggCGTGAAACGCGGAGTGACTCTAAGCGGTGCTTGACCACTGCACCCTGGCGATTCACTACCTGGGCGATGCCGTTGTCGATTTCCACATCAGGATCGAGACGGTCGGTTTCCAGGACCACCGAATTGGTCCGGTACGGTTGCAGGTAg                                                            <  8:171697/149‑1 (MQ=255)                                                                                                aaCGCGGCGTGCCTCGAAGCGGTGCTTGACCACTGCACCCTGGCGAGGCACTACCTGGGCGATGCCGTTGTCGATTTCCACATCAGGATCGAGACGGTCGGTTTCCAGGACCACCGAATTGGTCCGGTACGGTTGCAGGTAGGGCaaaa                                                     <  5:288769/149‑1 (MQ=255)                                                                                                  caggtagtgcctcgccagggtgcagtggtcaagcaccgcttcgaggcacTACCTGGGCGATGCCGTTGTCGATTTCCACATCAGGATCGAGACGGTCGGTTTCCAGGACCACCGAATTGGTCCGGTACGGTTGCAGGTa                                                             >  1:145221‑M2/50‑139 (MQ=255)                                                                                                  caggtagtgcctcgccagggtgcagtggtcaagcaccgcttcgaggcacTACCTGGGCGATGCCGTTGTCGATTTCCACATCAGGATCGAGACGGTCGGTTTCCAGGACCACCGAATTGGTCCGGTACGGTTGCAGGTa                                                             <  2:145221‑M2/90‑1 (MQ=255)                                                                                                          gcctcgccagggtgcagtggtcaagcaccgcttcgaggcacTACCTGGGCGATGCCGTTGTCGATTTCCACATCAGGATCGAGACGGTCGGTTTCCAGGACCACCGAATTGGTCCGGTACGGTTGCAGGTAGGGCAAAAGTGCATAAcc                                           >  4:259596‑M2/42‑149 (MQ=255)                                                                                                          GCCTCGAAGCGGTGCTTGACCACTGCACCCTGGCGAGGCACTACCTGGGCGATGCCGTTGTCGATTTCCACATCAGGATCGAGACGGTCGGTTTCCAGGACCACCGAATTGGTCCGGTACGGTTGCa                                                                 <  8:221494‑M1/127‑1 (MQ=255)                                                                                                          GCCTCGAAGCGGTGCTTGACCACTGCACCCTGGCGAGGCACTACCTGGGCGATGCCGTTGTCGATTTCCACATCAGGATCGAGACGGTCGGTTTCCAGGACCACCGAATTGGTCCGGTACGGTTGCa                                                                 >  7:221494‑M1/1‑127 (MQ=255)                                                                                                            ctcgccagggtgcagtggtcaagcaccgcttcgaggcacTACCTGGGCGATGCCGTTGTCGATTTCCACATCAGGATCGAGACGGTCGGTTTCCAGGACCACCGAATTGGTCCGGTACGGTTGCAGGTAGGGCAAAAGTGCATAACcgc                                         >  5:239514‑M2/40‑149 (MQ=255)                                                                                                            CTCGAAGCGGTGCTTGACCACTGCACCCTGGCGAGGCACTACCTGGGCGATGCCGTTGTCGATTTCCACATCAGGATCGAGACGGTCGGTTTCCAGGACCACCGAATTGGTCCGGTACGGTTGCAGGTAGGGCAAAAGTGCATAACcgc                                         >  3:292867‑M1/1‑149 (MQ=255)                                                                                                             TCGAAGCGGTGCTTGACCACTGCACCCTGGCGAGGCACTACCTGGGCGATGCCGTTGTCGATTTCCACATCAGGATCgaga                                                                                                            >  7:207022‑M1/1‑81 (MQ=255)                                                                                                             TCGAAGCGGTGCTTGACCACTGCACCCTGGCGAGGCACTACCTGGGCGATGCCGTTGTCGATTTCCACATCAGGATCgaga                                                                                                            <  8:207022‑M1/81‑1 (MQ=255)                                                                                                                    ggTGCTTGACCACTGCACCCTGGCGAGGCACTACCTGGGCGATGCCGTTGTCGATTTCCACATCAGGATCGAGACGGTCGGTTTCCAGGACCACCGAATTg                                                                                 >  1:74991/1‑101 (MQ=255)                                                                                                                    ggTGCTTGACCACTGCACCCTGGCGAGGCACTACCTGGGCGATGCCGTTGTCGATTTCCACATCAGGATCGAGACGGTCGGTTTCCAGGACCACCGAATTg                                                                                 <  2:74991/101‑1 (MQ=255)                                                                                                                        cTTGACCACTGCACCCTGGCGAGGCACTACCTGGGCGATGCCGTTGTCGATGTCCACATCAGGATCGAGACGGTCGGGTTCCAGGACCACCGAATTGGGACGGTCCGGGTGCAGGTAGGGAAAACGTGCATAACCTCGTGAATTGGTgc                             >  6:99656/1‑149 (MQ=255)                                                                                                                             ccACTGCACCCTGGCGAGGCACTACCTGGGCGATGCCGTTGTCGATTTCCACATCAGGATCGAGACGGTCGGTTTCCAGGACCAACGAATTGGTCCGGTACGGTTGCAGGTAGGGCAAAAGTGCATAACCGCGTGAATTTGTGCGCGTa                        >  6:213643/1‑149 (MQ=255)                                                                                                                              cACTGCACCCTGGCGAGGCACTACCTGGGCGATGCCGTTGTCGATTTCCACATCAGGATCGAGACGGTCGGTTTCCAGGACCACCGAATTGGTCCGGGACGGTTGCAGGTAGGGCAAAAGTGCATAACCGCGTGAATTGGTGCGCGTag                       >  2:137775/1‑148 (MQ=255)                                                                                                                                   caccgcttcgaggcacTACCTGGGCGATGCCGTTGTCGATTTCCACATCAGGATCGAGACGGTCGGTTTCCAGGACCACCGAATTGGTCCGGTACGGTTGCAGGTAGGGCAAAAGTGCATAACCGCGTGAATTGGTGCGCGTACCCGtt                  <  3:259596‑M2/133‑1 (MQ=255)                                                                                                                                     cccTGGCGAGGCACTACCTGGGCGATGCCGTTGTCGATTTCCACATCAGGATCGAGACGGTCGGTTTCCAGGACCACCGAATTGGTCCGGTACGGTTGCAGGTAGGGCAAAAGTGCATAACCGCGTGAATTGGTGCGCGTACCCGTTGc                <  2:250906/149‑1 (MQ=255)                                                                                                                                        tGGCGAGGCACTACCTGGGCGATGCCGTTGTCGATTTCCACATCAGGATCGAGACGGTCGGTTTCCAGGACCACCGAATTGGTCCGGTACGGTTGCAGGTAGGGCAAAAGTGCATaa                                             >  4:206593/1‑117 (MQ=255)                                                                                                                                        tGGCGAGGCACTACCTGGGCGATGCCGTTGTCGATTTCCACATCAGGATCGAGACGGTCGGTTTCCAGGACCACCGAATTGGTCCGGTACGGTTGCAGGTAGGGCAAAAGTGCATaa                                             <  3:206593/117‑1 (MQ=255)                                                                                                                                           cgaggcacTACCTGGGCGATGCCGTTGTCGATTTCCACATCAGGATCGAGACGGTCGGTTTCCAGGACCACCGAATTGGTCCGGTACGGTTGCAGGTAGGGCAAAAGTGCATAACCGCGTGAATTGGTGCGCGTACCCGTTGCGTTTTg          <  3:188319‑M2/141‑1 (MQ=255)                                                                                                                                                   tACCTGGGCGATGCCGTTGTCGATTTCCACATCAGGATCGAGACGGTCGGTTTCCAGGACCACCGAATTGGTCCGGTACGGTTGCAGGTAGGGCAAAAGTGCATAACCGCGTGAATTGGTGCGCGTACCCGTTGCGTTTTGCAGGCCca  >  3:125402/1‑149 (MQ=255)                                                                                                                                                   |                                                                                                                                                     ACCATGCCCAGTTGGGTACCGTTCTCGGCCAGCACCTGGGCCCCAAAGGGCAGCGGTTGACCCTGGGTATCGTGCAGGGTCAGTACAAGGCGTGAAACGCGGCGTGCCTCGAAGCGGTGCTTGACCACTGCACCCTGGCGAGGCACTACCTGGGCGATGCCGTTGTCGATTTCCACATCAGGATCGAGACGGTCGGTTTCCAGGACCACCGAATTGGTCCGGTACGGTTGCAGGTAGGGCAAAAGTGCATAACCGCGTGAATTGGTGCGCGTACCCGTTGCGTTTTGCAGGCCCA  >  NC_002947/2129863‑2130157

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.