New junction evidence | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_002947 | = 2987610 | NA (NA) | 4 (0.080) | 4/246 | NT | NA | coding (789/2991 nt) | PP_2612 | membrane protein |
? | NC_002947 | = 2987639 | NA (NA) | coding (760/2991 nt) | PP_2612 | membrane protein |
TTTCCAGCGTCTTGTTCAGCAACATGGCGACCAGGTTGCGATGGTGAAAGTCGCGGCTCTGCGGGCTGAGCTGTTCGGCATCCAGCCGGTAGCATGCCGGCACGCGCTCCTGCTCGGGAGGTTGGGCAGGTTTTGTGTGCTCCAGTTGCTCGGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/2987456‑2987610 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ctcggccTACCAGCATCAACTGCGTGACCTGATGCCGGCCGAGCAACTGGAGCACACAAAACCTGCCCAACCTCCCGAGCAGGAGCGCGTGCCGGCATGCTACCGGCTGGATGCCGAACAGCTCAGCCCGCAGAGCCGCGACTTTCACCATCGCA < NC_002947/2987639‑2987492 TTTCCAGCGTCTTGTTCAGCAACATGGCGACCAGGTTGCGATGGTGAAAGTCGCGGCTCTGCGGGCTGAGCTGTTCGGCATCCAGCCGGTAGCATGCCGGCACGCGCTCCTGCTCGGGAGGTTGGGCAGGTTTTGTGTGCTCCAGTTGC > 4:321886/1‑149 CCAGCGTCTTGTTCAGCAACATGGCGACCAGGTTGCGATGGTGAAAGTCGCGGCTCTGCGGGCTGAGCTGTTCGGCATCCAGCCGGTAGCATGCCGGCACGCGCTCCTGCTCGGGAGGTTGGGCAGGTTTTGTGTGCTCCAGTTGCTC < 2:215176/148‑1 AGCGTCTTGTTCAGCAACATGGCGACCAGGTTGCGATGGTGAAAGTCGCGGCTCTGCGGGCTGAGCTGTTCGGCATCCAGCCGGTAGCATGCCGGCACGCGCTCCTGCTCGGGAGGTTGGGCAGGTTTTGTGTGCTCCAGTTGCTCGGC < 2:143088/149‑1 GCGTCTTGTTCAGCAACATGGCGACCAGGTTGCGATGGTGACAGTCGCGGCTCTGCGGTCTGAGCTGTTCGGCATCCAGCCGGTAGCATGCCGGCACGCGCTCCTGCGCGGGAGGTTGGGCAGGTTTTGTGTGCTCCAGTTTCTCGGCC < 4:37927/149‑1 CAACATGGCGACCAGGTTGCGATGGTGAAAGTCGTGGCTCTGCGGGCTGAGCTGTTCGGCATCCAGCCGGTAGCATGCCGGCACGCGCTCCTGCTCGGGAGGTTGGGCAGGTTTTGTGTGCTCCAGTTGCTCGGCCTACCAGCATCAAC > 1:210830/1‑149 AGTCGCGGCTCTGCGGGCTGAGCTGTTCGGCATCCAGCCGGTAGCATGCCGGCACGCGCTCCTGCTCGGGAGGTTGGGCAGGTTTTGTGTGCTCCAGTTGCTCGGCCTACCAGCATCAACTGCGTGACCTGATGCCGGCCGAGCAACTG < 2:210830/149‑1 GCGGCTCTGCGGGCTGAGCTGTTCGGCATCCAGCCGGTAGCATGCCGGCACGCGCTCCTGCTCGGGAGGTTGGGCAGGTTTTGTGTGCTCCAGTTGCTCGGCCTACCAGCATCAACTGCGTGACCTGATGCCGGCCGAG > 3:205147/1‑139 GCGGCTCTGCGGGCTGAGCTGTTCGGCATCCAGCCGGTAGCATGCCGGCACGCGCTCCTGCTCGGGAGGTTGGGCAGGTTTTGTGTGCTCCAGTTGCTCGGCCTACCAGCATCAACTGCGTGACCTGATGCCGGCCGAG < 4:205147/139‑1 TCGGCCTACCAGCATCAACTGCGTGACCTGATGCCGGCCGAGCAACTGGAGCACACAAAACCTGCCCAACCTCCCGAGCAGGAGCGCGTGCCGGCATGCTACCGGCTGGATGCCGAACAGCTCAGCCCGCAGAGCCGCGACTTTCACCA > 1:306516/1‑149 gtCCTACCAGCATCAACTGCGTGACCTGATGCCGGCCGAGCAACTGGAGCACACAAAACCTGCCCAACCTCCCGAGCAGGAGCGCGTGCCGGCATGCTACCGGCTGGATGCCGAACAGCTCAGCCCGCAGAGCCGCGACTTTCACCATC < 4:38767/147‑1 GCCTACCAGCATCAACTGCGTGACCTGATGCCGGCCGAGCAACTGGAGCACACAAAACCTGCCCAACCTCCCGAGCAGGAGCGCGTGCCGGCATGCTACCGGCTGGATGCCGAACAGCTCAGCCCGCAGAGCCGCGACTTTCACCATCG > 1:264254/1‑149 GCCTACCAGCATCAACTGCGTGACCTGATGCCGGCCGAGCAACTGGAGCACACAAAACCTGCCCAACCTCCCGAGCAGGAGCGCGTGCCGGCATGCTACCGGCTGGATGCCGAACAGCTCAGCCCGCAGAGCCGCGACTTTCACCATC > 3:34340/1‑148 GCCTACCAGCATCAACTGCGTGACCTGATGCCGGCCGAGCAACTGGAGCACACAAAACCTGCCCAACCTCCCGAGCAGGAGCGCGTGCCGGCATGCTACCGGCTGGATGCCGAACAGCTCAGCCCGCAGAGCCGCGACTTTCACCATC < 4:34340/148‑1 CTACCAGCATCAACTGCGTGACCTGATGCCGGCCGAGCAACTGGAGCACACAAAACCTGCCCAACCTCCCGAGCAGGAGCGCGTGCCGGCATGCTACCGGCTGGATGCCGAACAGCTCAGCCCGCAGAGCCGCGACTTTCACCATCGCA < 6:6433/149‑1 CTACCAGCATCAACTGCGTGACCTGATGCCGGCCGAGCAACTGGAGCACACAAAACCTGCCCAACCTCCCGAGCAGGAGCGCGTGCCGGCATGCTACCGGCTGGATGCCGAACAGCTCAGCCCGCAGAGCCGCGACTTTCACCATCGC > 2:108626/1‑148 CTACCAGCATCAACTGCGTGACCTGATGCCGGCCGAGCAACTGGAGCACACAAAACCTGCCCAACCTCCCGAGCAGGAGCGCGTGCCGGCATGCTACCGGCTGGATGCCGAACAGCTCAGCCCGCAGAGCCGCGACTTTCACCATCGC > 6:86849/1‑148 TTTCCAGCGTCTTGTTCAGCAACATGGCGACCAGGTTGCGATGGTGAAAGTCGCGGCTCTGCGGGCTGAGCTGTTCGGCATCCAGCCGGTAGCATGCCGGCACGCGCTCCTGCTCGGGAGGTTGGGCAGGTTTTGTGTGCTCCAGTTGCTCGGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/2987456‑2987610 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ctcggccTACCAGCATCAACTGCGTGACCTGATGCCGGCCGAGCAACTGGAGCACACAAAACCTGCCCAACCTCCCGAGCAGGAGCGCGTGCCGGCATGCTACCGGCTGGATGCCGAACAGCTCAGCCCGCAGAGCCGCGACTTTCACCATCGCA < NC_002947/2987639‑2987492 |
Alignment Legend |
---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |