New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 2988913	36 (0.700)	3 (0.060)	3/250	NT	8.4%	coding (429/951 nt)	PP_2613	hypothetical protein
	?	NC_002947	= 2988969	31 (0.620)					coding (373/951 nt)	PP_2613	hypothetical protein

GTTTTCGTGTGTTTTCCATTCATGAGCCGGCCCCCAGTTGACTCGCCATGCCAACCGAGACACCGGGCCAAGCCAGGCCTTGCGATGGTCGTCGTCCAGCGCATTCAGCCAGGCTGCAAGATGGTCCGGTGTGACATGGTGAGTGGCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/2988766‑2988913 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tggcaGCGCTGGCAGACCACTTCACCAGCCTGGTGCAGGTCGTGCTCCCTGACCACAGCGTTGCCACTCACCATG  <  NC_002947/2988969‑2988900                                                                                                                                                                                                                            GTTTTCGTGTGTTTTCCATTCATGAGCCGGCCCCCAGTTGACTCGCCATGCCAACCGAGACACCGGGCCAAGCCAGGCCTTGCTATGGTCGTCTTCCAGCGCATTCAGGCAGGCTGCAAGATGGTCCGGTGTGACATGGTGAGTGGC                                                                         <  6:292721/147‑1                                           TCGCCATGCCAACCGAGACACCGGGCCAAGCCAGGCCTTGCGATGGTCGTCGTCCAGCGCATTCAGCCAGGCTGCAAGATGGTCCGGTGTGACATGGTGAGTGGCAGCGCTGGCAGACCACTTCACCAGCCTGGTGCAGGTCGTGCTCC                             >  2:218573/1‑149                                                             CACCGGGCCAAGCCAGGCCTTGCGATGGTCGTCGTCCAGCGCATTCAGCCAGGCTGCAAGATGGTCCGGTGTGACATGGTGAGTGGCAGCGCTGGCAGACCACTTCACCAGCCTGGTGCAGGTCGTGCTCCCTGACCACAGCGTTGCCA           <  1:218573/149‑1                                                                      AAGCCAGGCCTTGCGATGGTCGTCGTCCAGCGCATTCAGCCAGGCTGCAAGATGGGCCGGTGTGACATGGTGAGTGGCAGCGCTGGCAGACCACTTCACCAGCCTGGTGCAGGTCGTGCTCCCTGACCACAGCGTTGCCACTCACCATG  <  3:77785/149‑1                                                                                                                                                                                                                            GTTTTCGTGTGTTTTCCATTCATGAGCCGGCCCCCAGTTGACTCGCCATGCCAACCGAGACACCGGGCCAAGCCAGGCCTTGCGATGGTCGTCGTCCAGCGCATTCAGCCAGGCTGCAAGATGGTCCGGTGTGACATGGTGAGTGGCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/2988766‑2988913 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tggcaGCGCTGGCAGACCACTTCACCAGCCTGGTGCAGGTCGTGCTCCCTGACCACAGCGTTGCCACTCACCATG  <  NC_002947/2988969‑2988900

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.