New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 2988913	36 (0.700)	3 (0.060)	3/250	NT	8.4%	coding (429/951 nt)	PP_2613	hypothetical protein
	?	NC_002947	= 2988969	31 (0.620)					coding (373/951 nt)	PP_2613	hypothetical protein

CGTGTGTTTTCCATTCATGAGCCGGCCCCCAGTTGACTCGCCATGCCAACCGAGACACCGGGCCAAGCCAGGCCTTGCGATGGTCGTCGTCCAGCGCATTCAGCCAGGCTGCAAGATGGTCCGGTGTGACATGGTGAGTGGCAACGCTGTGGTCAGGGAGCACGACCTGCACCAGGCTGGTGAAGTGGTCTGCCAGCGCTGCCAGGCCAACCTCGGCATCCAGCGCGATGGCTCCACCGATAGGCATCCAGGTCGTGATTGCATGGGCAAGCAGCTCGTGAGCGTCT  >  NC_002947/2988771‑2989057                                                                                                                                               |                                                                                                                                                 cGTGTGTTTTCCATTCATGAGCCGGCCCCCAGTTGACTCGCCATGCCAACCGAGACACCGGGCCAAGCCAGGCCTTGCGATGGTCGTCGTCCAGCGCATTCAGCCAGGCTGCAAGATGGTCCGGTGTGACATGGTGAGTGGCAACGCt                                                                                                                                             <  6:325823/148‑1 (MQ=255)  gtgtgtTTTCCATTCATGAGCCGGCCCCCAGTTGACTCGCCATGCCAACCGAGACACCGGGCCAAGCCAGGCCTTGCGATGGTCGTCGTCCAGCGCATTCAGCCAGGCTGCAAGATGGTCCGGTGTGACATGGTGAGTGGCAACGCtgt                                                                                                                                           <  1:61010/149‑1 (MQ=255)  gtgtgtTTTCCATTCATGAGCCGGCCCCCAGTTGACTCGCCATGCCAACCGAGACACCGGGCCAAGCCAGGCCTTGCGATGGTCGTCGTCCAGCGCATTCAGCCAGGCTGCAAGATGGTCCGGTGTGACATGGTGAGTGGCAACGCtg                                                                                                                                            <  6:175499/148‑1 (MQ=255)       ttttCCATTCATGAGCCGGCCCCCAGTTGACTCGCCATGCCAACCGAGACACCGGGCCAAGCCAGGCCTTGCGATGGTCGTCGTCCAGCGCATTCAGCCAGGCTGCAAGATGGTCCGGTGTGACATGGTGAGTGGCAACGCTGTGGt                                                                                                                                        >  1:161953/1‑147 (MQ=255)         ttCCATTCATGAGCCGGCCCCCAGTTGACTCGCCATGCCAACCGAGACACCGGGCCAAGCCAGGCCTTGCGATGGTCGTCGTCCAGCGCATTCAGCCAGGCTGCAAGATGGTCCGGTGTGACATGGTGAGTGGCAACGCTGTGGTCAg                                                                                                                                     <  3:315105/148‑1 (MQ=255)          tCCATTCATGAGCCGGCCCCCAGTTGACTCGCCATGCCAACCGAGACACCGGGCCAAGCCAGGCCTTGCGATGGTCGTCGTCCAGCGCATTCAGCCAGGCTGCAAGATGGTCCGGTGTGACATGGTGAGTGGCAACGCTGTGGTCAgg                                                                                                                                    <  7:221442/148‑1 (MQ=255)          tCCATTCATGAGCCGGCCCCCAGTTGACTCGCCATGCCAACCGAGACACCGGGCCAAGCCAGGCCTTGCGATGGTCGTCGTCCAGCGCATTCAGCCAGGCTGCAAGATGGTCCGGTGTGACATGGTGAGTGGCAACGCTGTGGTCAgg                                                                                                                                    <  3:116837/148‑1 (MQ=255)           ccATTCATGTGCCGGCCCCCACTAGACTCTCCATGCCAACCGTTACACCGGGCGAAGCCAGGCCTTGCGATGGTCGTCGTCCAGCGCATTCAGCCAGGGTGCAAGATGCTCCGGTGTGACATGGTGAGTGGCAACGCTGTGGTCAggg                                                                                                                                   <  8:291269/148‑1 (MQ=255)                   gAGCCGGCCCCCAGTTGACTCGCCATGCCAACCGAGACACCGGGCCAAGCCAGGCCTTGCGATGGTCGTCGTCCAGCGCATTCAGCCAGGCTGCAAGATGGTCCGGTGTGACATGGTGAGTGGCAACGCTGTGGTCAGGGAGCACGAcc                                                                                                                          >  3:31557/1‑149 (MQ=255)                     gCCGGCCCCCAGGTGACTCGCCTTGCCTACCGAGACACCGGGCCATTCCAGGCCTTGCGATGGTCGTCGTCCAGCGCATTCAGCCAGGCTGCAAGATGGTCCGGTGTGACATGGTGAGTGGCAACGCTGTGGTCAGGGAGCACGACCTg                                                                                                                        <  5:276336/149‑1 (MQ=255)                      ccGGCCCCCAGTTGACTCGCCATGCCAACCGAGACACCGGGCCAAGCCAGGCCTTGCGATGGTCGTCGTCCAGCGCATTCAGCCAGGCTGCAAGATGGTCCGGTGTGACATGGTGAGTGGCAACGCTGTGGTCAGGGAGCACGACCTGc                                                                                                                       <  1:249801/149‑1 (MQ=255)                                     cTCGCCATGCCAACCGAGACACCGGGCCAAGCCAGGCCTTGCGATGGTCGTCGTCCAGCGCATTCAGCCAGGCTGCAAGATGGTCCGGTGTGACATGGTGAGTGGCAACGCTGTGGTCAGGGAGCACGACCTGCACCAGGCTGGTGAAg                                                                                                        <  3:79948/149‑1 (MQ=255)                                      tCGCCATGCCAACCGAGACACCGGGCCAAGCCAGGCCTTGCGATGGTCGTCGTCCAGCGCATTCAGCCAGGCTGCAAGATGGTCCGGTGTGACATGGTGAGTGGCAgcgctggcagaccacttcaccagcctggtgcaggtcgtgctcc                                                                                                       >  2:218573‑M1/1‑106 (MQ=255)                                      tCGCCATGCCAACCGAGACACCGGGCCAAGCCAGGCCTTGCGATGGTCGTCGTCCAGCGCATTCAGCCAGGCTGCAAGATGGTCCGGTGTGACATGGTGAGTGGCAACGCtgt                                                                                                                                           >  6:131464/1‑113 (MQ=255)                                      tCGCCATGCCAACCGAGACACCGGGCCAAGCCAGGCCTTGCGATGGTCGTCGTCCAGCGCATTCAGCCAGGCTGCAAGATGGTCCGGTGTGACATGGTGAGTGGCAACGCTGTGGTCAGGGa                                                                                                                                  <  7:221983/122‑1 (MQ=255)                                      tCGCCATGCCAACCGAGACACCGGGCCAAGCCAGGCCTTGCGATGGTCGTCGTCCAGCGCATTCAGCCAGGCTGCAAGATGGTCCGGTGTGACATGGTGAGTGGCAACGCTGTGGTCAGGGa                                                                                                                                  >  8:221983/1‑122 (MQ=255)                                                aaCCGAGACACCGGGCCAAGCCAGGCCTTGCGATGGTCGTCGTCCAGCGCATTCAGCCAGGCTGCAAGATGGTCCGGTGTGACATGGTGAGTGGCAACGCTGTGGTCAGGGAGCACGACCTGCACCAGGCTg                                                                                                              >  7:54891/1‑132 (MQ=255)                                                aaCCGAGACACCGGGCCAAGCCAGGCCTTGCGATGGTCGTCGTCCAGCGCATTCAGCCAGGCTGCAAGATGGTCCGGTGTGACATGGTGAGTGGCAACGCTGTGGTCAGGGAGCACGACCTGCACCAGGCTg                                                                                                              <  8:54891/132‑1 (MQ=255)                                                        cacCGGGCCAAGCCAGGCCTTGCGATGGTCGTCGTCCAGCGCATTCAGCCAGGCTGCAAGATGGTCCGGTGTGACATGGTGAGTGGCAgcgctggcagaccacttcaccagcctggtgcaggtcgtgctccctgaccacagcgttgcca                                                                                     <  1:218573‑M1/149‑62 (MQ=255)                                                                 aaGCCAGGCCTTGCGATGGTCGTCGTCCAGCGCATTCAGCCAGGCTGCAAGATGGGCCGGTGTGACATGGTGAGTGGCAgcgctggcagaccacttcaccagcctggtgcaggtcgtgctccctgaccacagcgttgccactcaccatg                                                                            <  3:77785‑M1/149‑71 (MQ=255)                                                                    ccAGGCCTTGCGATGGTCGTCGTCCAGCGCATTCAGCCAGGCTGCAAGATGGTCCGGTGTGACATGGTGAGTGGCAACGCTGTGGt                                                                                                                                        >  2:110319/1‑86 (MQ=255)                                                                              cGATGGTCGTCGTCCAGCGCATTCAGCCAGGCTGCAAGATGGTCCGGTGTGACATGGTGAGTGGCAACGCTGTGGTCAGGGAGCACGACCTGCACCAGGCTGGTGAAGTGGTCTGCCAGCGCTGCCAGGCCAACCTCGGCATCCAgcgc                                                               >  5:329825/1‑149 (MQ=255)                                                                                 tGGACGACGACCATCGCATTCAGCCAGGCTGCAAGATGGTCCGGTGTGACATGGTGAGTGGCAACGCTGTGGTCAGGGAGCACGACCTGCACCAGGCTGGTGAAGTGGTCTGCCAGCGCTGCCAgg                                                                                   >  1:280048/1‑126 (MQ=255)                                                                                 tGGACGACGACCATCGCATTCAGCCAGGCTGCAAGATGGTCCGGTGTGACATGGTGAGTGGCAACGCTGTGGTCAGGGAGCACGACCTGCACCAGGCTGGTGAAGTGGTCTGCCAGCGCTGCCAgg                                                                                   <  2:280048/126‑1 (MQ=255)                                                                                    tcgtcgtcCAGCGCATTCAGCCAGGCTGCAAGATGGTCCGGTGTGACATGGTGAGTGGCAACGCTGTGGTGAGGGAGCACGACCTGCACCAGGCTGGTGAAGTGGTCTGCCAGCGCTGCCAGGCCAACCTCGGCATCCAGCGCGATgtc                                                         >  5:104372/1‑147 (MQ=255)                                                                                    tcgtcgtcCAGCGCATTCAGCCAGGCTGCAAGATGGTCCGGTGTGACATGGTGAGTGGCAACGCTGTGGTCAGGGAGCACGACCTGCACCAGGCTGGTGAAGTGGTCTGCCAGCGCTGCCAGGCCAACCTCGGCATCCAGCGCGATGGc                                                         >  8:254976/1‑149 (MQ=255)                                                                                                  aTTCAGCCAGGCTGCAAGATGGTCCGGTGTGACATGGTGAGTGGCAACGCTGTGGTCAGGGAGCACGACCTGCACCAGGCTGGTGAAGTGGTCTGCCAGCGCTGCCAGGCCAACCTCGGCATCCAGCGCGATGGCTCCACCGATAGGCa                                           >  3:305958/1‑149 (MQ=255)                                                                                                              tGCAAGATGGTCCGGTGTGACATGGTGAGTGGCAACGCTGTGGTCAGGGAGCACGACCTGCACCAGGCTGGTGAAGTGGTCTGCCAGCGCTGCCAGGCCAACCTCGGCATCCAGCGCGATGGCTCCACCGATAGGCATCCAGGTCGTGa                               >  3:78991/1‑149 (MQ=255)                                                                                                              tGCAAGATGGTCCGGTGTGACATGGTGAGTGGCAACGCTGTGGTCAGGGAGCACGACCTGCACCAGGCTGGTGAAGTGGTCTGCCAGCGCTGCCAGGCCAACCTCGGCATCCAGCGCGATGGCTCCACCGATAGGCAGCCAGGTCGTGa                               >  2:253614/1‑149 (MQ=255)                                                                                                                   gATGGTCCGGTGTGACATGGTGAGTGGCAACGCTGTGGTCAGGGAGCACGACCTGCACCAGGCTGGTGAAGTGGTCTGCCAGCGCTGCCAGGCCAACCTCGGCATCCAGCGCGATGGCTCCACCGATAGGCATCCAGGTCGTGATTGCa                          <  7:254976/149‑1 (MQ=255)                                                                                                                     tGGTCCGGTGTGACATGGTGAGTGGCAACGCTGTGGTCAGGGAGCACGACCTGCACCAGGCTGGTGAAGTGGTCTGCCAGCGCTGCCAGGCCAACCTCGGCATCCAGCGCGATGGCTCCACCGATAGGCATCCAGGTCGTGATTGCAt                         <  4:305958/148‑1 (MQ=255)                                                                                                                       gTCCGGTGTGACATGGTGAGTGGCAACGCTGTGGTCAGGGAGCACGACCTGCACCAGGCTGGTGAAGTGGTCTGCCAGCGCTGCCAGGCCAACCTCGGCATCCAGCGCGATGGCTCCACCGATAGGCATCCAGGTCGTGATTGCATggg                      <  2:326567/149‑1 (MQ=255)                                                                                                                       gTCAGGTGTGACATGGTGAGGGGCAACGCTGTGGTCAGGGAGCACGACCTGCACCAGGCTGGTGAAGTGGTCTGCCAGCGCTGCCAGGCCAACCTCGGCATCCAGCGCGATGGCTCCACCGATAGGCATCCAGGTCGTGATTGCATgg                       <  6:104372/148‑1 (MQ=255)                                                                                                                        tCCGGTGTGACATGGTGAGTGGCAACGCTGTGGTCAGGGAGCACGACCTGCACCAGGCTGGTGAAGTGGTCTGCCAGCGCTGCCAGGCCAACCTCGGCATCCAGCGCGATGGCTCCACCGATAGGCATCCAGGTCGTGATTGCATggg                      >  7:101041/1‑148 (MQ=255)                                                                                                                          cGGTGTGACATGGTGAGTGGCAACGCTGTGGTCAGGGAGCACGACCTGCACCAGGCTGGTGAAGTGGTCTGCCAGCGCTGCCAGGCCAACCTCGGCATCCAGCGCGATGGCTCCACCGATAGGCATCCAGGTCGTGATTGCATGGGc                     >  5:203699/1‑147 (MQ=255)                                                                                                                            gtgtGACATGGTGAGTGGCAACGCTGTGGTCAGGGAGCACGACCTGCACCAGGCTGGTGAAGTGGTCTGCCAGCGCTGCCAGGCCAACCTCGGCATCCAGCGCGATGGCTCCACCGATAGGCATCCAGGTCGTGATTGCATGGGCAagc                 <  6:329825/149‑1 (MQ=255)                                                                                                                            gtgtGACATGGTGAGTGGCAACGCTGTGGTCAGGAAGCACGACCTGCACCAGGCTGGTGAAGTGGTCTGCCAGCGCTGCCAGGCCAACCTCGGCATCCAGCGCGATGGCTCCACCGATAGGCATCCAGGTCGTGATTGCATGGGCAag                  >  6:223415/1‑148 (MQ=255)                                                                                                                                 aCATGGTGAGTGGCAACGCTGTGGTCAGGGAGCACGACCTGCACCAGGCTGGTGAAGTGGTCTGCCAGCGCTGCCAGGCCAACCTCGGCATCCAgcgc                                                               >  7:231433/1‑98 (MQ=255)                                                                                                                                 aCATGGTGAGTGGCAACGCTGTGGTCAGGGAGCACGACCTGCACCAGGCTGGTGAAGTGGTCTGCCAGCGCTGCCAGGCCAACCTCGGCATCCAGCGCGATGGCTCCACCGATAGGCATCCAGGTCGTGATTGCGTGGGCAAGCAGCTc            >  7:269830/1‑149 (MQ=255)                                                                                                                                 aCAGGGTGAGGGGCAACGCTGTGGGCAGGGAGCACGACCTGCCCCAGGCTGGTGACGTCGGCTGCCAGCGCTGCCAGGCCAACCTCGGCAGCCAgcgc                                                               <  8:231433/98‑1 (MQ=255)                                                                                                                                  cATGGTGAGTGGCAACGCTGTGGTCAGGGAGCACGACCTGCACCAGGCTGGTGAAGTGGTCTGCCAGCGCtgccactcaccatgtcacaccggcccatcttgcagcctggctgaatgcgctggacgacgaccatcgcaaggcctggctt           <  3:77785‑M2/149‑80 (MQ=255)                                                                                                                                           tGGCAACGCTGTGGTCAGGGAGCACGACCTGCACCAGGCTGGTGAAGTGGTCTGCCAGCGCtgccactcaccatgtcacaccggaccatcttgcagcctggctgaatgcgctggacgacgaccatcgcaaggcctggcttggcccggtg  <  1:218573‑M2/149‑89 (MQ=255)                                                                                                                                               |                                                                                                                                                 CGTGTGTTTTCCATTCATGAGCCGGCCCCCAGTTGACTCGCCATGCCAACCGAGACACCGGGCCAAGCCAGGCCTTGCGATGGTCGTCGTCCAGCGCATTCAGCCAGGCTGCAAGATGGTCCGGTGTGACATGGTGAGTGGCAACGCTGTGGTCAGGGAGCACGACCTGCACCAGGCTGGTGAAGTGGTCTGCCAGCGCTGCCAGGCCAACCTCGGCATCCAGCGCGATGGCTCCACCGATAGGCATCCAGGTCGTGATTGCATGGGCAAGCAGCTCGTGAGCGTCT  >  NC_002947/2988771‑2989057

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.