New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 3059142	35 (0.680)	4 (0.080)	4/244	NT	11.0%	coding (421/1275 nt)	PP_2671	sensor histidine kinase
	?	NC_002947	= 3059164	32 (0.660)					coding (443/1275 nt)	PP_2671	sensor histidine kinase

CGCAAGAGGCCGGTATCGATGCCTGGCTCGGCCGCCAGTTGTTCGGCGAGCGCTACCACAGCAGCCGGCTGCTGGACTTGAGTGATGGCCGCCGCGTGTTGATTGCCGTGGATGCGCGGGATGAAATCGATGAAGTCTGGGACTCCCTGCAACAAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/3058987‑3059142 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcaacaacGCCAGGCCACACACGCCAAGCAGTTGTTGCAGGGAGTCCCAGACTTCATCGATTTCATCCCGCGCATCCACGGCAATCAACACGCGGCGGCCATCACTCAAGTCCAGCAGCCGGCTGCTGTGGTAGCGCTCGCCGAACAACTGGC  <  NC_002947/3059164‑3059020                                                                                                                                                                                                                                                                                                               CGCAAGAGGCCGGTATCGATGCCTGGCTCGGCCGCCAGTTGTTCGGCGAGCGCTACCACAGCAGCCGGCTGCTGGACTTGAGTGATGGCCGCCGCGTGTTGATTGCCGTGGATGCGCGGGATGAAATCGATGAAGTCTGGGACTCCCTG                                                                                                                                                          <  4:12268/149‑1  GCAAGAGGCCGGTATCGATGCCTGGCTCGGCCGCCAGTTGTTCGGCGAGCGCTACCACAGCAGCCGGCTGCTGGACTTGAGTGATGGCCGCCGCGTGTTGATTGCCGTGGATGCGCGGGATGAAATCGATGAAGTCTGGGACTCCCTGC                                                                                                                                                         <  8:170049/149‑1  GCAAGAGGCCGGTATCGATGCCTGGCTCGGCCGCCAGTTGTTCGGCGAGCGCTACCACAGCAGCCGGCTGCTGGACTTGAGTGATGGCCGCCGCGTGTTGATTGCCGTGGATGCGCGGGATGAAATCGATGAAGTCTGGGACTCCCTG                                                                                                                                                          >  8:149069/1‑148                                              GCGAGCGCTACCACAGCAGCCGGCTGCTGGACTTGAGTGATGGCCGCCGCGTGTTGATTGCCGTGGATGCGCGGGATGAAATCGATGAAGTCTGGGACTCCCTGCAACAACGCCAGGCCACACACGCCAAGCAGTTGTTGCAG                                                                                                                   <  5:144899/143‑1                                              GCGAGCGCTACCACAGCAGCCGGCTGCTGGACTTGAGTGATGGCCGCCGCGTGTTGATTGCCGTGGATGCGCGGGATGAAATCGATGAAGTCTGGGACTCCCTGCAACAACGCCAGGCCACACACGCCAAGCAGTTGTTGCAG                                                                                                                   >  6:144899/1‑143                                                     CTACCACAGCAGCCGGCTGCTGGACTTGAGTGATGGCCGCCGCGTGTTGATTGCCGTGGATGCGCGGGATGAAATCGATGAAGTCTGGGACTCCCTGCAACAACGCCAGGCCACACACGCCAAGCAGTTGTTGCA                                                                                                                    <  5:15088/135‑1                                                     CTACCACAGCAGCCGGCTGCTGGACTTGAGTGATGGCCGCCGCGTGTTGATTGCCGTGGATGCGCGGGATGAAATCGATGAAGTCTGGGACTCCCTGCAACAACGCCAGGCCACACACGCCAAGCAGTTGTTGCA                                                                                                                    >  6:15088/1‑135                                                                                                                                                         CAACGCCAGGCCACACACGCCAAGCAGTTGTTGCAGGGAGTCCCAGACTTCATCGATTTCATCCCGCGCATCCACGGCAATCCACACGCGGCGGCCATCACTCAAGTCCAGCAGCCGGCTGCTGTGGTAGCGCTCGCCGAACAACTGGC  <  4:144670/149‑1                                                                                                                                                                                                                                                                                                               CGCAAGAGGCCGGTATCGATGCCTGGCTCGGCCGCCAGTTGTTCGGCGAGCGCTACCACAGCAGCCGGCTGCTGGACTTGAGTGATGGCCGCCGCGTGTTGATTGCCGTGGATGCGCGGGATGAAATCGATGAAGTCTGGGACTCCCTGCAACAAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/3058987‑3059142 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcaacaacGCCAGGCCACACACGCCAAGCAGTTGTTGCAGGGAGTCCCAGACTTCATCGATTTCATCCCGCGCATCCACGGCAATCAACACGCGGCGGCCATCACTCAAGTCCAGCAGCCGGCTGCTGTGGTAGCGCTCGCCGAACAACTGGC  <  NC_002947/3059164‑3059020

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.