New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 3059142	35 (0.680)	4 (0.080)	4/244	NT	11.0%	coding (421/1275 nt)	PP_2671	sensor histidine kinase
	?	NC_002947	= 3059164	32 (0.660)					coding (443/1275 nt)	PP_2671	sensor histidine kinase

GCCAGTTGTTCGGCGAGCGCTACCACAGCAGCCGGCTGCTGGACTTGAGTGATGGCCGCCGCGTGTTGATTGCCGTGGATGCGCGGGATGAAATCGATGAAGTCTGGGACTCCCTGCAACAACTGCTTGGCGTGTGTGGCCTGGCGTTGTTGCTGAGCTTGTGGACCATCCGCTGGGCGGTACGGCGGGCCATGGGCCTGCTGGATGAGCTGCTGGGGGCCTTGCACCAGGTCTCAGGCGGGCAATTGACGGCACGCCTGCGCGAGGCCGGCCTGCCGGAAGCGCGCCAGTTG  >  NC_002947/3059020‑3059312                                                                                                                                                 |                                                                                                                                                     gccAGTTGTTCGGCGAGCGCTACCACAGCAGCCGGCTGCTGGACTTGAGTGATGGCCGCCGCGTGTGGATTGCCGTGGATGCGCGGGATGAAATCGATGAAGTCTGGGACTCCCTGCAACAACTGCTTGGCGTGTGTGGCCTGGCgttg                                                                                                                                                  <  4:144670‑M2/149‑5 (MQ=255)        gttCGGCGAGCGCTACCACAGCAGCCGGCTGCTGGACTTGAGTGATGGCCGCCGCGTGTTGATTGCCGTGGATGCGCGGGATGAAATCGATGAAGTCTGGGACTCCCTGCAACAACTGCTTGGCGTGTGTGGCCTGGCGTTGTTGCTg                                                                                                                                            <  1:80931/148‑1 (MQ=255)            ggCGAGCGCTACCACAGCAGCCGGCTGCTGGACTTGAGTGATGGCCGCCGCGTGTTGATTGCCGTGGATGCGCGGGATGAAATCGATGAAGTCTGGGACTCCCTGCAACAACTGCTTGGCGTGTGTGGCCTGGCGTTGTTGCTGAGCt                                                                                                                                        <  6:255133/148‑1 (MQ=255)              cGAGCGCTACCACAGCAGCCGGCTGCTGGACTTGAGTGATGGCCGCCGCGTGTCGATTGCCGTGGATGCGCGGGATGAAATCGATGAAGTCTGGGACTCCCTGCAACAACTGCTTGGCGTGTGTGGCCTGGCGTTGTTGCTGAGCTtgt                                                                                                                                     <  3:144670/149‑1 (MQ=255)                 gcgcTACCACAGCAGCCGGCTGCTGGACTTGAGTGATGGCCGCCGCGTGTTGATTGCCGTGGATGCGCGGGATGAAATCGATGAAGTCTGGGACTCCCTGCAACAACTGCTTGGCGTGTGTGGCCTGGCGTTGTTGCTGAGCTTGTGGa                                                                                                                                  <  1:33169/149‑1 (MQ=255)                   gcTACCACAGCAGCCGGCTGCTGGACTTGAGTGATGGCCGCCGCGTGTTGATTGCCGTGGATGCGCGGGATGAAATCGATGAAGTCTGGGACTCCCTGCAACAACTGCTTGGCGTGTGTGGCCTGGCGTTGTTGCTGAGCTTGTGGAc                                                                                                                                 >  6:62842/1‑148 (MQ=255)                      aCCACAGCAGCCGGCTGCTGGACTTGAGTGATGGCCGCCGCGTGTTGATTGCCGTGGATGCGCGGGATGAAATCGATGAAGTCTGGGACTCCCTGCAACAACTGCTTGGCGTGTGTGGCCTGGCGTTGTTGCTGAGCTTGTGGACCATc                                                                                                                             >  4:262119/1‑149 (MQ=255)                              agcCGGCTGCTGGACTTGAGTGATGGCCGCCGCGTGTTGATTGCCGTGGATGCGCGGGATGAAATCGATGAAGTCTGGGACTCCCTGCAACAACTGCTTGGCGTGTGTGGCCTGGCGTTGTTGCTGAGCTTGTGGACCATCCGCTGGGc                                                                                                                     <  7:195840/149‑1 (MQ=255)                                ccGGCTGCTGGACTTGAGTGATGGCCGCCGCGTGTTGATTGCCGTGGATGCGCGCGATGAAATCGATGAAGTCTGGGACTCCCTGCAACAACTGCTTGGCGTGTGTGGCCTGGCGTTGTTGCTGAGCTTGTGGACCATCCGCTGGGCgg                                                                                                                   >  1:111540/1‑149 (MQ=255)                                                aGTGATGCCCGCCGCGTGTTGATGGCCGGGGACGCGCGGGATCAACTCGATGAAGTCTGGGACTCCCTGCAACAACTGCTTGGCGTGTGTGGCCTGGCGTTGTTGCTGAGCTTGTGGACCATCCGCTGGGCGGTACGGCGGGCCATgg                                                                                                    <  4:54837/148‑1 (MQ=255)                                                  tGATGGCCGCCGCGTGTTGATTGCCGTGGATGCGCGGGATGAAATCGATGAAGTCTGGGACTCCCTGCAACAACTGCTTGGCGTGTGTGGCCTGGCGTTGTTGCTGAGCTTGTGGACCATCCGCTGGGCGGTACGGCGGGCCATGGGcc                                                                                                 >  1:79891/1‑149 (MQ=255)                                                        ccgccgCGTGTTGATTGCCGTGGATGCGCGGGATGAAATCGATGAAGTCTGGGACTCCCTGCAACAACTGCTTGGCGTGTGTGGCCTGGCGTTGTTGCTGAGCTTGTGGACCATCCGCTGGGCGGTACGGCGGGCCATGGGCctgctg                                                                                            >  6:135958/1‑148 (MQ=255)                                                                    gATTGCCGTGGATGCGCGGGATGAAATCGATGAAGTCTGGGACTCCCTGCAACAACTGCTTGGCGTGTGTGGCCTGGCGTTGTTGCTGAGCTTGTGGACCATCCGCTGGGCGGTACGGCGGGCCATGGGCCTGCTGGATGAGctgctg                                                                                <  5:62842/148‑1 (MQ=255)                                                                        gCCGTGGATGCGCGGGATGAAATCGATGAAGTCTGGGACTCCCTGCAACAACTGCTTGGCGTGTGTGGCCTGGCGTTGTTGCTGAGCTTGTGGACCATCCGCTGGGCGGTACGGCGGGCCATggg                                                                                                   <  2:7827/125‑1 (MQ=255)                                                                        gCCGTGGATGCGCGGGATGAAATCGATGAAGTCTGGGACTCCCTGCAACAACTGCTTGGCGTGTGTGGCCTGGCGTTGTTGCTGAGCTTGTGGACCATCCGCTGGGCGGTACGGCGGGCCATggg                                                                                                   >  1:7827/1‑125 (MQ=255)                                                                           gTGGATGCGCGGGATGAAATCGATGAAGTCTGGGACTCCCTGCAACAACTGCTTGGCGTGTGTGGCCTGGCGTTGTTGCTGAGCTTGTGGACCATCCGCTGGGCGGTACGGCGGGCCATGGGCCTGCTGGATGAGCTGCTGGGGGCCtt                                                                        <  3:262119/149‑1 (MQ=255)                                                                                      ggATGAAATCGATGAAGTCTGGGACTCCCTGCAACAACTGCTTGGCGTGTGTGGCCTGGCGTTGTTGCTGAGCTTGTGGACCATCCGCTGGGCGGTACGGCGGGCCATGGGCCTGCTGGATGAGCTGCTGGGGGCCTTGCACCAGGtct                                                             <  2:202647/149‑1 (MQ=255)                                                                                       gATGAAAGCGATGAAGTCTGGGACTCCCTGCAACAACTGCTTGGCGTGTGTGGCCTGGCGTTGTTGCTGAGCTTGTGGACCATCCGCTGGGCGGTACGGCTGGCCATGGGCCTGCTGGATGAGCTGCTGGGGGCCTTGCACCAGGtctc                                                            <  1:55661/149‑1 (MQ=255)                                                                                           aaaTCGATGAAGTCTGGGACTCCCTGCAACAACTGCTTGGCGTGTGTGGCCTGGCGTTGTTGCTGAGCTTGTGGACCATCCGCTGGGCGGTACGGCGGGCCATGGGCCTGCTGGATGAGCTGCTGGGGGCCTTGCACCAGGTCTCAGGc                                                        <  5:135958/149‑1 (MQ=255)                                                                                             aTCGATGAAGTCTGGGACTCCCTGCAACAACTGCTTGGCGTGTGTGGCCTGGCGTTGTTGCTGAGCTTGTGGACCATCCGCTGGGCGGTACGGCGGGCCATGGGCCTGCTGGATGAGCTGCTgggg                                                                             <  1:137944/126‑1 (MQ=255)                                                                                             aTCGATGAAGTCTGGGACTCCCTGCAACAACTGCTTGGCGTGTGTGGCCTGGCGTTGTTGCTGAGCTTGTGGACCATCCGCTGGGCGGTACGGCGGGCCATGGGCCTGCTGGATGAGCTGCTgggg                                                                             >  2:137944/1‑126 (MQ=255)                                                                                                 aTGAAGTCTGGGACTCCCTGCAACAACTGCTTGGCGTGTGTGGCCTGGCGTTGTTGCTGAGCTTGTGGACCATCCGCTGGGCGGTACGGCGGGCCATGGGCCTGCTGGATGAGCTGCTGGGGGCCTTGCACCAGGTCTCAGGCGGGCaa                                                  >  4:61814/1‑149 (MQ=255)                                                                                                               tCCCTGCAACAACTGCTTGGCGTGTGTGGCCTGGCGTTGTTGCTGAGCTTGTGGACCATCCGCTGGGCGGTACGGCGGGCCATGGGCCTGCTGGATGAGCTGCTGGGGGCCTTGCACCAGGTCTCAGGCGGGCAATTGACGGCACGCCt                                    >  1:199219/1‑149 (MQ=255)                                                                                                                 ccTGCAACAACTGCTTGGCGTGTGTGGCCTGGCGTTGTTGCTGAGCTTGTGGACCATCCGCTGGGCGGTACGGCGGGCCATGGGCCTGCTGGATGAGCTGCTGGGGGCCTTGCACCAGGtctc                                                            >  3:134524/1‑123 (MQ=255)                                                                                                                 ccTGCAACAACTGCTTGGCGTGTGTGGCCTGGCGTTGTTGCTGAGCTTGTGGACCATCCGCTGGGCGGTACGGCGGGCCATGGGCCTGCTGGATGAGCTGCTGGGGGCCTTGCACCAGGtctc                                                            <  4:134524/123‑1 (MQ=255)                                                                                                                 ccTGCAACAACTGCTTGGCGTGTGTGGCCTGGCGTTGTTGCTGAGCTTGTGGACCATCCGCTGGGCGGTACGGCGGGCCATGGGCCTGCTGGATGAGCTGCTGGGGGCCTTGCACCAGGTCTCAGGCggg                                                     >  8:33549/1‑130 (MQ=255)                                                                                                                 ccTGCAACAACTGCTTGGCGTGTGTGGCCTGGCGTTGTTGCTGAGCTTGTGGACCATCCGCTGGGCGGTACGGCGGGCCATGGGCCTGCTGGATGAGCTGCTGGGGGCCTTGCACCAGGTCTCAGGCggg                                                     <  7:33549/130‑1 (MQ=255)                                                                                                                 ccTGCAACAACTGCTTGGCGTGTGTGGCCTGGCGTTGTTGCTGAGCTTGTGGACCATCCGCTGGGCGGTACGGCGGGCCATGGGCCTGCTGGATGAGCTGCTGGGGGCCTTGCACCAGGTCTCAGGCGGGCAATTGACGGCACGCCTgc                                  >  2:108557/1‑149 (MQ=255)                                                                                                                  cTGCAACAACTGCTTGGCGTGTGTGGCCTGGCgttgttgcagggagtcccagacttcatcgatttcatcccgcgcatccacggcaatcaacacgcggcggccatcactcaagtccagcagccggctgctgtggtagcgctcgc                                       <  5:144899‑M2/143‑112 (MQ=255)                                                                                                                  cTGCAACAACTGCTTGGCGTGTGTGGCCTGGCgttgttgcagggagtcccagacttcatcgatttcatcccgcgcatccacggcaatcaacacgcggcggccatcactcaagtccagcagccggctgctgtggtagcgctcgc                                       >  6:144899‑M2/1‑32 (MQ=255)                                                                                                                  cTGCAACAACTGCTTGGCGTGTGTGGCCTGGCGTTGTTGCTGAGCTTGTGGACCATCCGCTGGGCGGTACGGCGGGCCATGGGCCTGCTGGATGAGCTGCTGGGGGCCTTGCACCAGGTCTCAGGCGGGCAATTGACGGCACGCCTgcg                                 >  3:154298/1‑149 (MQ=255)                                                                                                                   tGCAACAACTGCTTGGCGTGTGTGGCCTGGCgttgttgcagggagtcccagacttcatcgatttcatcccgcgcatccacggcaatcaacacgcggcggccatcactcaagtccagcagccggctgctgtggtag                                              <  5:15088‑M2/135‑105 (MQ=255)                                                                                                                   tGCAACAACTGCTTGGCGTGTGTGGCCTGGCgttgttgcagggagtcccagacttcatcgatttcatcccgcgcatccacggcaatcaacacgcggcggccatcactcaagtccagcagccggctgctgtggtag                                              >  6:15088‑M2/1‑31 (MQ=255)                                                                                                                               ttGGCGTGTGTGGCCTGGCGTTGTTGCTGAGCTTGTGGACCATCCGCTGGGCGGTACGGCGGGCCATGGGCCTGCTGGATGAGCTGCTGGGGGCCTTGCACCAGGt                                                               <  2:47198/106‑1 (MQ=255)                                                                                                                               ttGGCGTGTGTGGCCTGGCGTTGTTGCTGAGCTTGTGGACCATCCGCTGGGCGGTACGGCGGGCCATGGGCCTGCTGGATGAGCTGCTGGGGGCCTTGCACCAGGt                                                               >  1:47198/1‑106 (MQ=255)                                                                                                                                   cGTGTGTGGCCTGGCGTTGTTGCTGAGCTTGTGGACCATCCGCTGGGCGGTACGGCGGGCCATGGGCCTGCTGGATGAGCTGCTGGGGGCCTTGCACCAGGTCTCAGGCGGGCAATTGACGGCACGCCTGCGCGAGGCCGGCCTGCCgg                <  2:111540/149‑1 (MQ=255)                                                                                                                                           gCCTGGCGTTGTTGCTGAGCTTGTGGACCATCCGCTGGGCGGTACGGCGGGCCATGGGCCTGCTGGATGAGCTGCTGGGGGCCTTGCACCAGGTCTCAGGCGGGCAATTGACGGCACGCCTGCGCGAGGCCGGCCTGCCGGAAgcgcgc        >  5:50493/1‑149 (MQ=255)                                                                                                                                           gCCTGGCGTTGTTGCTGAGCTTGTGGACCATCCGCTGGGCGGTACGGCGGGCCATGGGCCTGCTGGATGAGCTGCTGGGGGCCTTGCACCAGGTCTCAGGCGGGCAATTGACGGCACGCCTGCGCGAGGCCGGCCTGCCGGAAgcgcgc        >  5:45517/1‑149 (MQ=255)                                                                                                                                                gCGTTGTTGCTGAGCTTGTGGACCATCCGCTGGGCGGTACGGCGGGCCATGGGCCTGCTGGATGAGCTGCTGGGGGCCTTGCACCAGGTCTCAGGCGGGCAATTGACGGCACGCCTGCGCGAGGCCGGCCTGCCGGAAGCGCGCCAGtt   <  3:61814/149‑1 (MQ=255)                                                                                                                                                 cGTTGTTGCTGAGCTTGTGGACCATCCGCTGGGCGGTACGGCGGGCCATGGGCCTGCTGGATGAGCTGCTGGGGGCCTTGCACCAGGTCTCAGGCGGGCAATTGACGGCACGCCTGCGCGAGGCCGGCCTGCCGGAAGCGCGCCAGTTg  <  6:50493/149‑1 (MQ=255)                                                                                                                                                 cGTTGTTGCTGAGCTTGTGGACCATCCGCTGGGCGGTACGGCGGGCCATGGGCCTGCTGGATGAGCTGCTGGGGGCCTTGCACCAGGTCTCAGGCGGGCAATTGACGGCACGCCTGCGCGAGGCCGGCCTGCCGGAAGCGCGCCAGTTg  >  6:51904/1‑149 (MQ=255)                                                                                                                                                 cGTTGTTGCTGAGCTTGTGGACCATCCGCTGGGCGGTACGGCGGGCCATGGGCCTGCTGGATGAGCTGCTGGGGGCCTTGCACCAGGTCTCAGGCGGGCAATTGACGGCACGCCTGCGCGAGGCCGGCCTGCCGGAAGCGCGCCAGTTg  <  6:45517/149‑1 (MQ=255)                                                                                                                                                 |                                                                                                                                                     GCCAGTTGTTCGGCGAGCGCTACCACAGCAGCCGGCTGCTGGACTTGAGTGATGGCCGCCGCGTGTTGATTGCCGTGGATGCGCGGGATGAAATCGATGAAGTCTGGGACTCCCTGCAACAACTGCTTGGCGTGTGTGGCCTGGCGTTGTTGCTGAGCTTGTGGACCATCCGCTGGGCGGTACGGCGGGCCATGGGCCTGCTGGATGAGCTGCTGGGGGCCTTGCACCAGGTCTCAGGCGGGCAATTGACGGCACGCCTGCGCGAGGCCGGCCTGCCGGAAGCGCGCCAGTTG  >  NC_002947/3059020‑3059312

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.