New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 3059142	35 (0.680)	4 (0.080)	4/244	NT	11.0%	coding (421/1275 nt)	PP_2671	sensor histidine kinase
	?	NC_002947	= 3059164	32 (0.660)					coding (443/1275 nt)	PP_2671	sensor histidine kinase

TATCGATGCCTGGCTCGGCCGCCAGTTGTTCGGCGAGCGCTACCACAGCAGCCGGCTGCTGGACTTGAGTGATGGCCGCCGCGTGTTGATTGCCGTGGATGCGCGGGATGAAATCGATGAAGTCTGGGACTCCCTGCAACAACTGCTTGGCGTGTGTGGCCTGGCGTTGTTGCTGAGCTTGTGGACCATCCGCTGGGCGGTACGGCGGGCCATGGGCCTGCTGGATGAGCTGCTGGGGGCCTTGCACCAGGTCTCAGGCGGGCAATTGACGGCACGCCTGCGCGAGGC  >  NC_002947/3059000‑3059287                                                                                                                                               |                                                                                                                                                  tATCGATGCGTGGGTCGGCCGCCAGTTGTTCGGGGAGCGCTACCACAGCAGCGGGCTGCTGGACTTGAGTGATGGCCGCCGCGTGTTGATTGCCGTGGATGCGCGGGATGAAATCGATGAAGTCTGGGACTCCCTGCAACAACTGCTTg                                                                                                                                             <  7:189240/149‑1 (MQ=255) tATCGATGCCTGGCTCGGCCGCCAGTTGTTCGGCGAGCGCTACCACAGCAGCCGGCTGCTGGACTTGAGTGATGGCCGCCGCGTGTTGATTGCCGTGGATGCGCGGGATGAAATCGATGAAGTCTGGGACTCCCTGCAACAACTGCTTg                                                                                                                                             <  5:126713/149‑1 (MQ=255)       tGCCTGGCTCGGCCGCCAGTTGTTCGGCGAGCGCTACCACAGCAGCCGGCTGCTGGACTTGAGTGATGGCCGCCGCGTGTTGATTGCCGTGGATGCGCGGGATGAAATCGATGAAGTCTGGGACTCCCTGCAACAACTGCTTGGCgtgt                                                                                                                                       <  7:149069/149‑1 (MQ=255)                     gccAGTTGTTCGGCGAGCGCTACCACAGCAGCCGGCTGCTGGACTTGAGTGATGGCCGCCGCGTGTGGATTGCCGTGGATGCGCGGGATGAAATCGATGAAGTCTGGGACTCCCTGCAACAACTGCTTGGCGTGTGTGGCCTGGCgttg                                                                                                                         <  4:144670‑M2/149‑5 (MQ=255)                            gttCGGCGAGCGCTACCACAGCAGCCGGCTGCTGGACTTGAGTGATGGCCGCCGCGTGTTGATTGCCGTGGATGCGCGGGATGAAATCGATGAAGTCTGGGACTCCCTGCAACAACTGCTTGGCGTGTGTGGCCTGGCGTTGTTGCTg                                                                                                                   <  1:80931/148‑1 (MQ=255)                                ggCGAGCGCTACCACAGCAGCCGGCTGCTGGACTTGAGTGATGGCCGCCGCGTGTTGATTGCCGTGGATGCGCGGGATGAAATCGATGAAGTCTGGGACTCCCTGCAACAACTGCTTGGCGTGTGTGGCCTGGCGTTGTTGCTGAGCt                                                                                                               <  6:255133/148‑1 (MQ=255)                                 gCGAGCGCTACCACAGCAGCCGGCTGCTGGACTTGAGTGATGGCCGCCGCGTGTTGATTGCCGTGGATGCGCGGGATGAAATCGATGAAGTCTGGGACTCCCTGCAACAACgccaggccacacacgccaagcagttgttgcag                                                                                                                   >  6:144899‑M1/1‑111 (MQ=255)                                 gCGAGCGCTACCACAGCAGCCGGCTGCTGGACTTGAGTGATGGCCGCCGCGTGTTGATTGCCGTGGATGCGCGGGATGAAATCGATGAAGTCTGGGACTCCCTGCAACAACgccaggccacacacgccaagcagttgttgcag                                                                                                                   <  5:144899‑M1/143‑33 (MQ=255)                                  cGAGCGCTACCACAGCAGCCGGCTGCTGGACTTGAGTGATGGCCGCCGCGTGTCGATTGCCGTGGATGCGCGGGATGAAATCGATGAAGTCTGGGACTCCCTGCAACAACTGCTTGGCGTGTGTGGCCTGGCGTTGTTGCTGAGCTtgt                                                                                                            <  3:144670/149‑1 (MQ=255)                                     gcgcTACCACAGCAGCCGGCTGCTGGACTTGAGTGATGGCCGCCGCGTGTTGATTGCCGTGGATGCGCGGGATGAAATCGATGAAGTCTGGGACTCCCTGCAACAACTGCTTGGCGTGTGTGGCCTGGCGTTGTTGCTGAGCTTGTGGa                                                                                                         <  1:33169/149‑1 (MQ=255)                                       gcTACCACAGCAGCCGGCTGCTGGACTTGAGTGATGGCCGCCGCGTGTTGATTGCCGTGGATGCGCGGGATGAAATCGATGAAGTCTGGGACTCCCTGCAACAACTGCTTGGCGTGTGTGGCCTGGCGTTGTTGCTGAGCTTGTGGAc                                                                                                        >  6:62842/1‑148 (MQ=255)                                        cTACCACAGCAGCCGGCTGCTGGACTTGAGTGATGGCCGCCGCGTGTTGATTGCCGTGGATGCGCGGGATGAAATCGATGAAGTCTGGGACTCCCTGCAACAACgccaggccacacacgccaagcagttgttgca                                                                                                                    >  6:15088‑M1/1‑104 (MQ=255)                                        cTACCACAGCAGCCGGCTGCTGGACTTGAGTGATGGCCGCCGCGTGTTGATTGCCGTGGATGCGCGGGATGAAATCGATGAAGTCTGGGACTCCCTGCAACAACgccaggccacacacgccaagcagttgttgca                                                                                                                    <  5:15088‑M1/135‑32 (MQ=255)                                          aCCACAGCAGCCGGCTGCTGGACTTGAGTGATGGCCGCCGCGTGTTGATTGCCGTGGATGCGCGGGATGAAATCGATGAAGTCTGGGACTCCCTGCAACAACTGCTTGGCGTGTGTGGCCTGGCGTTGTTGCTGAGCTTGTGGACCATc                                                                                                    >  4:262119/1‑149 (MQ=255)                                                  agcCGGCTGCTGGACTTGAGTGATGGCCGCCGCGTGTTGATTGCCGTGGATGCGCGGGATGAAATCGATGAAGTCTGGGACTCCCTGCAACAACTGCTTGGCGTGTGTGGCCTGGCGTTGTTGCTGAGCTTGTGGACCATCCGCTGGGc                                                                                            <  7:195840/149‑1 (MQ=255)                                                    ccGGCTGCTGGACTTGAGTGATGGCCGCCGCGTGTTGATTGCCGTGGATGCGCGCGATGAAATCGATGAAGTCTGGGACTCCCTGCAACAACTGCTTGGCGTGTGTGGCCTGGCGTTGTTGCTGAGCTTGTGGACCATCCGCTGGGCgg                                                                                          >  1:111540/1‑149 (MQ=255)                                                            tgGACTTGAGTGATGGCCGCCGCGTGTTGATTGCCGTGGATGCGCGGGATGAAATCGATGAAGTCTGGGACTCCCTGCAACAACTGCTTGGCgtgtgt                                                                                                                                     <  7:242067/98‑1 (MQ=255)                                                            tgGACTTGAGTGATGGCCGCCGCGTGTTGATTGCCGTGGATGCGCGGGATGAAATCGATGAAGTCTGGGACTCCCTGCAACAACTGCTTGGCgtgtgt                                                                                                                                     >  8:242067/1‑98 (MQ=255)                                                                    aGTGATGCCCGCCGCGTGTTGATGGCCGGGGACGCGCGGGATCAACTCGATGAAGTCTGGGACTCCCTGCAACAACTGCTTGGCGTGTGTGGCCTGGCGTTGTTGCTGAGCTTGTGGACCATCCGCTGGGCGGTACGGCGGGCCATgg                                                                           <  4:54837/148‑1 (MQ=255)                                                                      tGATGGCCGCCGCGTGTTGATTGCCGTGGATGCGCGGGATGAAATCGATGAAGTCTGGGACTCCCTGCAACAACTGCTTGGCGTGTGTGGCCTGGCGTTGTTGCTGAGCTTGTGGACCATCCGCTGGGCGGTACGGCGGGCCATGGGcc                                                                        >  1:79891/1‑149 (MQ=255)                                                                         tGGCCGCCGCGTGTTGATTGCCGTGGATGCGCGGGATGAAATCGATGAAGTCTGGGACTCCCTGCAACAACTGCTTGGCGTGTGTGGc                                                                                                                                  <  3:318299/88‑1 (MQ=255)                                                                         tGGCCGCCGCGTGTTGATTGCCGTGGATGCGCGGGATGAAATCGATGAAGTCTGGGACTCCCTGCAACAACTGCTTGGCGTGTGTGGc                                                                                                                                  >  4:318299/1‑88 (MQ=255)                                                                            ccgccgCGTGTTGATTGCCGTGGATGCGCGGGATGAAATCGATGAAGTCTGGGACTCCCTGCAACAACTGCTTGGCGTGTGTGGCCTGGCGTTGTTGCTGAGCTTGTGGACCATCCGCTGGGCGGTACGGCGGGCCATGGGCctgctg                                                                   >  6:135958/1‑148 (MQ=255)                                                                                        gATTGCCGTGGATGCGCGGGATGAAATCGATGAAGTCTGGGACTCCCTGCAACAACTGCTTGGCGTGTGTGGCCTGGCGTTGTTGCTGAGCTTGTGGACCATCCGCTGGGCGGTACGGCGGGCCATGGGCCTGCTGGATGAGctgctg                                                       <  5:62842/148‑1 (MQ=255)                                                                                            gCCGTGGATGCGCGGGATGAAATCGATGAAGTCTGGGACTCCCTGCAACAACTGCTTGGCGTGTGTGGCCTGGCGTTGTTGCTGAGCTTGTGGACCATCCGCTGGGCGGTACGGCGGGCCATggg                                                                          <  2:7827/125‑1 (MQ=255)                                                                                            gCCGTGGATGCGCGGGATGAAATCGATGAAGTCTGGGACTCCCTGCAACAACTGCTTGGCGTGTGTGGCCTGGCGTTGTTGCTGAGCTTGTGGACCATCCGCTGGGCGGTACGGCGGGCCATggg                                                                          >  1:7827/1‑125 (MQ=255)                                                                                               gTGGATGCGCGGGATGAAATCGATGAAGTCTGGGACTCCCTGCAACAACTGCTTGGCGTGTGTGGCCTGGCGTTGTTGCTGAGCTTGTGGACCATCCGCTGGGCGGTACGGCGGGCCATGGGCCTGCTGGATGAGCTGCTGGGGGCCtt                                               <  3:262119/149‑1 (MQ=255)                                                                                                          ggATGAAATCGATGAAGTCTGGGACTCCCTGCAACAACTGCTTGGCGTGTGTGGCCTGGCGTTGTTGCTGAGCTTGTGGACCATCCGCTGGGCGGTACGGCGGGCCATGGGCCTGCTGGATGAGCTGCTGGGGGCCTTGCACCAGGtct                                    <  2:202647/149‑1 (MQ=255)                                                                                                           gATGAAAGCGATGAAGTCTGGGACTCCCTGCAACAACTGCTTGGCGTGTGTGGCCTGGCGTTGTTGCTGAGCTTGTGGACCATCCGCTGGGCGGTACGGCTGGCCATGGGCCTGCTGGATGAGCTGCTGGGGGCCTTGCACCAGGtctc                                   <  1:55661/149‑1 (MQ=255)                                                                                                               aaaTCGATGAAGTCTGGGACTCCCTGCAACAACTGCTTGGCGTGTGTGGCCTGGCGTTGTTGCTGAGCTTGTGGACCATCCGCTGGGCGGTACGGCGGGCCATGGGCCTGCTGGATGAGCTGCTGGGGGCCTTGCACCAGGTCTCAGGc                               <  5:135958/149‑1 (MQ=255)                                                                                                                 aTCGATGAAGTCTGGGACTCCCTGCAACAACTGCTTGGCGTGTGTGGCCTGGCGTTGTTGCTGAGCTTGTGGACCATCCGCTGGGCGGTACGGCGGGCCATGGGCCTGCTGGATGAGCTGCTgggg                                                    <  1:137944/126‑1 (MQ=255)                                                                                                                 aTCGATGAAGTCTGGGACTCCCTGCAACAACTGCTTGGCGTGTGTGGCCTGGCGTTGTTGCTGAGCTTGTGGACCATCCGCTGGGCGGTACGGCGGGCCATGGGCCTGCTGGATGAGCTGCTgggg                                                    >  2:137944/1‑126 (MQ=255)                                                                                                                     aTGAAGTCTGGGACTCCCTGCAACAACTGCTTGGCGTGTGTGGCCTGGCGTTGTTGCTGAGCTTGTGGACCATCCGCTGGGCGGTACGGCGGGCCATGGGCCTGCTGGATGAGCTGCTGGGGGCCTTGCACCAGGTCTCAGGCGGGCaa                         >  4:61814/1‑149 (MQ=255)                                                                                                                                   tCCCTGCAACAACTGCTTGGCGTGTGTGGCCTGGCGTTGTTGCTGAGCTTGTGGACCATCCGCTGGGCGGTACGGCGGGCCATGGGCCTGCTGGATGAGCTGCTGGGGGCCTTGCACCAGGTCTCAGGCGGGCAATTGACGGCACGCCt           >  1:199219/1‑149 (MQ=255)                                                                                                                                     ccTGCAACAACTGCTTGGCGTGTGTGGCCTGGCGTTGTTGCTGAGCTTGTGGACCATCCGCTGGGCGGTACGGCGGGCCATGGGCCTGCTGGATGAGCTGCTGGGGGCCTTGCACCAGGtctc                                   <  4:134524/123‑1 (MQ=255)                                                                                                                                     ccTGCAACAACTGCTTGGCGTGTGTGGCCTGGCGTTGTTGCTGAGCTTGTGGACCATCCGCTGGGCGGTACGGCGGGCCATGGGCCTGCTGGATGAGCTGCTGGGGGCCTTGCACCAGGtctc                                   >  3:134524/1‑123 (MQ=255)                                                                                                                                     ccTGCAACAACTGCTTGGCGTGTGTGGCCTGGCGTTGTTGCTGAGCTTGTGGACCATCCGCTGGGCGGTACGGCGGGCCATGGGCCTGCTGGATGAGCTGCTGGGGGCCTTGCACCAGGTCTCAGGCggg                            <  7:33549/130‑1 (MQ=255)                                                                                                                                     ccTGCAACAACTGCTTGGCGTGTGTGGCCTGGCGTTGTTGCTGAGCTTGTGGACCATCCGCTGGGCGGTACGGCGGGCCATGGGCCTGCTGGATGAGCTGCTGGGGGCCTTGCACCAGGTCTCAGGCggg                            >  8:33549/1‑130 (MQ=255)                                                                                                                                     ccTGCAACAACTGCTTGGCGTGTGTGGCCTGGCGTTGTTGCTGAGCTTGTGGACCATCCGCTGGGCGGTACGGCGGGCCATGGGCCTGCTGGATGAGCTGCTGGGGGCCTTGCACCAGGTCTCAGGCGGGCAATTGACGGCACGCCTgc         >  2:108557/1‑149 (MQ=255)                                                                                                                                      cTGCAACAACTGCTTGGCGTGTGTGGCCTGGCgttgttgcagggagtcccagacttcatcgatttcatcccgcgcatccacggcaatcaacacgcggcggccatcactcaagtccagcagccggctgctgtggtagcgctcgc              <  5:144899‑M2/143‑112 (MQ=255)                                                                                                                                      cTGCAACAACTGCTTGGCGTGTGTGGCCTGGCgttgttgcagggagtcccagacttcatcgatttcatcccgcgcatccacggcaatcaacacgcggcggccatcactcaagtccagcagccggctgctgtggtagcgctcgc              >  6:144899‑M2/1‑32 (MQ=255)                                                                                                                                      cTGCAACAACTGCTTGGCGTGTGTGGCCTGGCGTTGTTGCTGAGCTTGTGGACCATCCGCTGGGCGGTACGGCGGGCCATGGGCCTGCTGGATGAGCTGCTGGGGGCCTTGCACCAGGTCTCAGGCGGGCAATTGACGGCACGCCTgcg        >  3:154298/1‑149 (MQ=255)                                                                                                                                       tGCAACAACTGCTTGGCGTGTGTGGCCTGGCgttgttgcagggagtcccagacttcatcgatttcatcccgcgcatccacggcaatcaacacgcggcggccatcactcaagtccagcagccggctgctgtggtag                     <  5:15088‑M2/135‑105 (MQ=255)                                                                                                                                       tGCAACAACTGCTTGGCGTGTGTGGCCTGGCgttgttgcagggagtcccagacttcatcgatttcatcccgcgcatccacggcaatcaacacgcggcggccatcactcaagtccagcagccggctgctgtggtag                     >  6:15088‑M2/1‑31 (MQ=255)                                                                                                                                            caacgccaggccacacacgccaagcagttgttgcagggagtcccagacttcatcgatttcatcccgcgcatccacggcaatccacacgcggcggccatcactcaagtccagcagccggctgctgtggtagcgctcgccgaacaactggc  <  4:144670‑M1/149‑146 (MQ=255)                                                                                                                                               |                                                                                                                                                  TATCGATGCCTGGCTCGGCCGCCAGTTGTTCGGCGAGCGCTACCACAGCAGCCGGCTGCTGGACTTGAGTGATGGCCGCCGCGTGTTGATTGCCGTGGATGCGCGGGATGAAATCGATGAAGTCTGGGACTCCCTGCAACAACTGCTTGGCGTGTGTGGCCTGGCGTTGTTGCTGAGCTTGTGGACCATCCGCTGGGCGGTACGGCGGGCCATGGGCCTGCTGGATGAGCTGCTGGGGGCCTTGCACCAGGTCTCAGGCGGGCAATTGACGGCACGCCTGCGCGAGGC  >  NC_002947/3059000‑3059287

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.