New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 3242037	36 (0.700)	4 (0.080)	4/250	NT	10.2%	coding (114/2289 nt)	PP_2839	hypothetical protein
	?	NC_002947	= 3242069	36 (0.730)					coding (146/2289 nt)	PP_2839	hypothetical protein

TGGCGTTCTGCAGGCAACACGGCCTGCCGGTCGCGGTGTGCCACGTGCGCTGGAGCGAAACACCTTGAGCTACAGCGTAGCGGTGCGCGCCTTGTGTGAGTTCAGCGCCAAGGTCGGCGACCTGGACCTGCGCTTCACGCCATCGCCCACC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/3241887‑3242037 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccaccACCCGCTGATGCCCTTCGATACCCTCCTGGGCGGTGGGCGATGGCGTGAAGCGCAGGTCCAGGTCGCCGACCTTGGCGCTGAACTCACACAAGGCGCGCACCGCTACGCTGTAGCTCAAGGTGTTTCGCTCCAGCGCACGTGGCAC  <  NC_002947/3242069‑3241924                                                                                                                                                                                                                                                                                                           TGGCGTTCTGCAGGCAACACGGCCTGCCGGTCGCGGTGTGCCACGTGCGCTGGAGCGAAACACCTTGAGCTACAGCGTAGCGGTGCGCGCCTTGTGTGAGTTCAGCGCCAAGGTCGGCGACCTGGACCTGCGCTTCACGCCATCGCCCA                                                                                                                                                      >  7:76449/1‑149   GCGTTCTGCAGGCAACACGGCCTGCCGGTCGCGGTGTGCCACGTGCGCTGGAGCGAAACACCTTGAGCTACCGCGTAGCGGTGCGCGCCTTGTGTGAGTTCAGCGCCAAGGTCGGCGACCTGGACCTGCGCTTCACGCCATCGCCCACC                                                                                                                                                    >  8:232341/1‑149            AGGCAACACGGCCTGCCGGTCGCGGTGTGCCACGTGCGCTGGAGCGAAACACCTTGAGCTACAGCGTAGCGGTGCGCGCCTTGTGTGAGTTCAGCGCCAAGGTCGGCGACCTGGACCTGCGCTTCACGCCATCGCCCACCACCCGCTGA                                                                                                                                           >  8:106647/1‑149                                         CCACGTGCGCTGGAGCGAAACACCTTGAGCTACAGCGTAGCGGTGCGCGCCTTGTGTGAGTTCAGCGCCAAGGTCGGCGACCTGGACCTGCGCTTCACGCCATCGCCCACCACCCGCTGATGCTCTTCGATACCCTCCTGGGCGGTGGG                                                                                                              <  7:106647/149‑1                                                                                                  GAGTTCAGCGCCAAGGTCGGCGACCTGGACCTGCGCTTCACGCCATCGCCCACCACCCGCTGATGCCCTTCGAAACCCTCCTGGGCGGTGG                                                                                                               >  5:11424/1‑91                                                                                                  GAGTTCAGCGCCAAGGTCGGCGACCTGGACCTGCGCTTCACGCCATCGCCCACCACCCGCTGATGCCCTTCGAAACCCTCCTGGGCGGTGG                                                                                                               <  6:11424/91‑1                                                                                                                                                    CACCACCCGCTGATGCCCTTCGATACCCTCCTGGGCGGTGGGCGATGGCGTGAAGCGCAGGTCCAGGTCGCCGACCTTGGCGCTGAACTCACACAAGGCGCGCACCGCTACGCTGTAGCTCAAGGTGTTTCGCTCCAGCGCACGTGGCA   >  5:45063/1‑149                                                                                                                                                     ACCACCCGCTGATGCCCTTCGATACCCTCCTGGGCGGTGGGCGATGGCGTGAAGCGCAGGTCCAGGTCGCCGACCTTGGCGCTGAACTCACACAAGGCGCGCACCGCTACGCTGTAGCTCAAGGTGTTTCGCTCCAGCGCACGTGGCAC  >  2:305625/1‑149                                                                                                                                                     ACCACCCGCTGATGCCCTTCGATACCCTCCTGGGCGGTGGGCGATGGCGTGAAGCGCAGGTCCAGGTCGCCGACCTTGGCGCTGAACTCACACAAGGCGCGCACCGCTACGCTGTAGCTCAAGGTGTTTCGCTCCAGCGCACGTGGCA   >  3:14906/1‑148                                                                                                                                                                                                                                                                                                           TGGCGTTCTGCAGGCAACACGGCCTGCCGGTCGCGGTGTGCCACGTGCGCTGGAGCGAAACACCTTGAGCTACAGCGTAGCGGTGCGCGCCTTGTGTGAGTTCAGCGCCAAGGTCGGCGACCTGGACCTGCGCTTCACGCCATCGCCCACC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/3241887‑3242037 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccaccACCCGCTGATGCCCTTCGATACCCTCCTGGGCGGTGGGCGATGGCGTGAAGCGCAGGTCCAGGTCGCCGACCTTGGCGCTGAACTCACACAAGGCGCGCACCGCTACGCTGTAGCTCAAGGTGTTTCGCTCCAGCGCACGTGGCAC  <  NC_002947/3242069‑3241924

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.