New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 3242037	36 (0.700)	4 (0.080)	4/250	NT	10.2%	coding (114/2289 nt)	PP_2839	hypothetical protein
	?	NC_002947	= 3242069	36 (0.730)					coding (146/2289 nt)	PP_2839	hypothetical protein

GCGTTCTGCAGGCAACACGGCCTGCCGGTCGCGGTGTGCCACGTGCGCTGGAGCGAAACACCTTGAGCTACAGCGTAGCGGTGCGCGCCTTGTGTGAGTTCAGCGCCAAGGTCGGCGACCTGGACCTGCGCTTCACGCCATCGCCCACCGCCCAGGAGGGTATCGAAGGGCATCAGCGGGTGGTGGCACGGCGGGCTGCTGGCTACGAGTCGGAAATCGCCCTTGAAGGCCAGTTCGAAACCCTCAGGGTGCGGGGCCGTGCCGACGGATATGACCCTGCCAGCAATCGTCTGGA  >  NC_002947/3241889‑3242183                                                                                                                                                     |                                                                                                                                                   gCGTTCTGCAGGCAACACGGCCTGCCGGTCGCGGTGTGCCACGTGCGCTGGAGCGAAACACCTTGAGCTACCGCGTAGCGGTGCGCGCCTTGTGTGAGTTCAGCGCCAAGGTCGGCGACCTGGACCTGCGCTTCACGCCATCGCCCACC                                                                                                                                                    >  8:232341‑M1/1‑149 (MQ=255)      cTGCAGGCAACACGGCCTGCCGGTCGCGGTGTGCCACGTGCGCTGGAGCGAAACACCTTGAGCTACAGCGTAGCTGTGCGCGCCTTGTGTGAGTTCAGCGCCAAGGTCTGCTACCTGGACCTGCGCTTCACGCCATCGCCCACCGccc                                                                                                                                                <  7:206740/148‑1 (MQ=255)        gCAGGCAACACGGCCTGCCGGTCGCGGTGTGCCACGTGCGCTGGAGCGAAACACCTTGAGCTACAGCGTAGCGGTGCGCGCCTTGTGTGAGTTCAGCGCCAAGGTCGGCGACCTGGACCTGCGCTTCACGCCATCGCCCACCGCCCag                                                                                                                                              >  4:166971/1‑148 (MQ=255)         cAGGCAACACGGCCTGCCGGTCGCGGTGTGCCACGTGCGCTGGAGCGAAACACCTTGAGCTACAGCGTAGCGGTGCGCGCCTTGTGTGAGTTCAGCGCCAAGGTCGGCGACCTGGACCTGCGCTTCACGCCATCGCCCACCGCCCagga                                                                                                                                            <  2:323930/149‑1 (MQ=255)          aGGCAACACGGCCTGCCGGTCGCGGTGTGCCACGTGCGCTGGAGCGAAACACCTTGAGCTACAGCGTAGCGGTGCGCGCCTTGTGTGAGTTCAGCGCCAAGGTCGGCGACCTGGACCTGCGCTTCACGCCATCGCCCACCacccgctga                                                                                                                                           >  8:106647‑M1/1‑140 (MQ=255)          aGGCAACACGGCCTGCCGGTCGCGGTGTGCCACGTGCGCTGGAGCGAAACACCTTGAGCTACAGCGTAGCGGTGCGCGCCTTGTGTGAGTTCAGCGCCAAGGTCGGCGACCTGGACCTGCGCTTCACGCCATCGCCCACCGCCCaggag                                                                                                                                           >  8:48171/1‑149 (MQ=255)          aGGCAACACGGCCTGCCGGTCGCGGTGTGCCACGTGCGCTGGAGCGAAACACCTTGAGCTACAGCGTAGCGGTGCGCGCCTTGTGTGAGTTCAGCGCCAAGGTCGGCGACCTGGACCTGCGCTTCACGCCATCGCCCACCGCCCaggag                                                                                                                                           >  1:305625/1‑149 (MQ=255)           ggCAACACGGCCTGCCGGTCGCGGTGTGCCACGTGCGCTGGAGCGAAACACCTTGAGCTACAGCGTAGCGGTGCGCGCCTTGTGTGAGTTCAGCGCCAAGGTCGGCGACCTGGACCTGCGCTTCACGCCATCGCCCACCGCCCaggagg                                                                                                                                          <  6:308364/149‑1 (MQ=255)              aaCACGGCCTGCCGGTCGCGGTGTGCCACGTGCGCTGGAGCGAAACACCTTGAGCTACAGCGTAGCGGTGCGCGCCTTGTGTGAGTTCAGCGCCAAGGTCGGCGACCTGGACCTGCGATTCACGCCATCGCCCACCGCCCAGGAGGGTa                                                                                                                                       >  4:226788/1‑149 (MQ=255)               acacGGCCTGCCGGTCGCGGTGTGCCACGTGCGCTGGAGCGAAACACCTTGAGCTACAGCGTAGCGGTGCGCGCCTTGTGTGAGTTCAGCGCCAAGGTCGGCGACCTGGACCTGCGCTTCACGCCATCGCCCACCGCCCAGGAGGGTAt                                                                                                                                      >  3:31356/1‑149 (MQ=255)                 acGGCCTGCCGGTCGCGGTGTGCCACGTGCGCTGGAGCGAAACACCTTGAGCTACAGCGTAGCGGTGCGCGCCTTGTGTGAGTTCAGCGCCAAGGTCGGCGACCTGGACCTGCGCTTCACGCCATCGCCCACCGCCCAGGAGGGTATc                                                                                                                                     >  6:107313/1‑148 (MQ=255)                     ccTGCCGGTCGCGGTGTGCCACGTGCGCTGGAGCGAAACACCTTGAGCTACAGCGTAGCGGTGCGCGCCTTGTGTGAGTTCAGCGCCAAGGTCGGCGACCTGGACCTGCGCTTCACGCCATCGCCCACCGCCCAGGAGGGTATCGAAgg                                                                                                                                <  5:54815/149‑1 (MQ=255)                             tCGCGGTGTGCCACGTGCGCTGGAGCGAAACACCTTGAGCTACAGCGTAGCGGTGCGCGCCTTGTGTGAGTTCAGCGCCAAGGTCGGCGACCTGGACCTGCGCTTCACGCCATCGCCCACCGCCCAGGAGGGTATCGAAGGGCATCAGc                                                                                                                        >  6:45063/1‑149 (MQ=255)                               gcgGTGTGCCACGTGCGCTGGAGCGAAACACCTTGAGCTACAGCGTAGCGGTGCGCGCCTTGTGTGAGTTCAGCGCCAAGGTCGGCGACCTGGACCTGCGCTTCACGCCATCGCCCACCGCCCAGGAGGGTATCGAAGGGCATCAGCgg                                                                                                                      <  3:166971/149‑1 (MQ=255)                                 ggTGTGCCACGTGCGCTGGAGCGAAACACCTTGGGCTACAGCGTAGCGGTGCGCGCCTTGTGTGAGTTCAGCGCCAAGGTCGGCGACCTGGACCTGCGCTTCACGCCATCGCCCACCGCCCAGGAGGGTATCGAAGGGCATCAGCGggt                                                                                                                    <  6:299369/149‑1 (MQ=255)                                    gtgCCACGTGCGCTGGAGCGAAACACCTTGAGCTACAGCGTAGCGGTGCGCGCCTTGTGTGAGTTCAGCGCCAAGGTCGGCGACCTGGACCTGCGCTTCACGCCATCGCCCACCGCCCAGGAGGGTATCGAAGGGCATCAGCGGGTggt                                                                                                                 >  2:305625‑M2/1‑146 (MQ=255)                                     tgCCACGTGCGCTGGAGCGAAACACCTTGAGCTACAGCGTAGCGGTGCGCGCCTTGTGTGAGTTCAGCGCCAAGGTCGGCGACCTGGACCTGCGCTTCACGCCATCGCCCACCGCCCAGGAGGGTATCGAAGGGCATCAGCGGGTggtg                                                                                                                >  5:45063‑M2/1‑145 (MQ=255)                                     tgCCACGTGCGCTGGAGCGAAACACCTTGAGCTACAGCGTAGCGGTGCGCGCCTTGTGTGAGTTCAGCGCCAAGGTCGGCGACCTGGACCTGCGCTTCACGCCATCGCCCACCGCCCAGGAGGGTATCGAAGGGCATCAGCGGGTggt                                                                                                                 >  3:14906‑M2/1‑145 (MQ=255)                                       ccACGTGCGCTGGAGCGAAACACCTTGAGCTACAGCGTAGCGGTGCGCGCCTTGTGTGAGTTCAGCGCCAAGGTCGGCGACCTGGACCTGCGCTTCACGCCATCGCCCACCacccgctgatgctcttcgataccctcctgggcggtggg                                                                                                              <  7:106647‑M1/149‑39 (MQ=255)                                                 tGGAGCGAAACACCTTGAGCTACAGCGTAGCGGTGCGCGCCTTGTGTGAGTTCAGCGCCAAGGTCGGCGACCTGGACCTGCGCTTCACGCCATCGCCCACCGCCCAGGAGGGTATCGAAGGGCATCAGCGGGTGGTGGCACGGCGGgct                                                                                                    >  1:111407/1‑149 (MQ=255)                                                     gCGAAACACCTTGAGCTACAGCGTAGCGGTGCGCGCCTTGTGTGAGTTCAGCGCCAAGGTCGGCGACCTGGACCTGCGCTTCACGCCATCGCCCACCGCCCAGGAGGGTATCGAAGGGCATCAGCGGGTGGTGGCACGGCGGGctgctg                                                                                                <  5:107313/149‑1 (MQ=255)                                                       gAAACACCTTGAGCTACAGCGTAGCGGTGCGCGCCTTGTGTGAGTTCAGCGCCAAGGTCGGCGACCTGGACCTGCGCTTCACGCCATCGCCCACCGCCCAGGAGGGTATCGAAGGGCATCAGCGGGTGGTGGCACGGCGGGCTGCTGGc                                                                                              >  4:276195/1‑149 (MQ=255)                                                                     tACAGCGTAGCGGTGCGCGCCTTGTGTGAGTTCAGCGCCAAGGTCGGCGACCTGGACCTGCGCTTCACGCCATCGCCCACCGCCCAGGAGGGTATCGAAGGGCATCAGCGGGTGGTGGCACGGCGGGCTGCTGGCTACGAGTCGGAAAt                                                                                >  7:64948/1‑149 (MQ=255)                                                                       cAGCGTAGCGGTGCGCGCCTTGTGTGAGTTCAGCGCCAAGGTCGGCGACCTGGACCTGCGCTTCACGCCATCGCCCACCGCCCAGGAGGGTATCGAAGGGCATCAGCGGGTGGTGGCACGGCGGGCTGCTGGCTACGAGTCGGAAATCg                                                                              >  2:196070/1‑149 (MQ=255)                                                                              gCGGTGCGCGCCTTGTGTGAGTTCAGCGCCAAGGTCGGCGACCTGGACCTGCGCTTCACGCCATCGCCCACCGCCCAGGAGGGTATCGAAGGGCATCAGCGGGTGGTGGCACGGCGGGCTGCTGGCTACGAGTCGGAAATCGCCCTTg                                                                        >  3:189726/1‑148 (MQ=255)                                                                                   gcgcgcCTTGTGTGAGTTCAGCGCCAAGGTCGGCGACCTGGACCTGCGCTTCACGCCATCGCCCACCGCCCAGGAGGGTATCGAAGGGCATCAGCGGGTGGTGGCACGGCGGGCTGCTGGCTACGAGTCGGAAATCGCCCTTGAAGGc                                                                   >  4:163314/1‑148 (MQ=255)                                                                                            gtgtgAGTTCAGCGCCAAGGTCGGCGACCTGGACCTGCGCTTCACGCCATCGCCCACCGCCCAGGAGGGTATCGAAGGGCATCAGCGGGTGGTGGCACGGCGGGCTGCTGGCTACGAGTCGGAAATCGCCCTTGAAGGCCAGTTCGaa                                                          <  4:31356/148‑1 (MQ=255)                                                                                               tgAGTTCAGCGCCAAGGTCGGCGACCTGGACCTGCGCTTCACGCCATCGCCGACCGCCCAGGAGGGTATCGAAGGGCATCAGCGGGTGGTGGCACGGCGGGCTGCTGGCTACGAGTCGGAAATCGCCCTTGAAGGCCAGTTCGAAAcc                                                       <  7:232341/148‑1 (MQ=255)                                                                                               tgAGTTCAGCGCCAAGGTCGGCGACCTGGACCTGCGCTTCACGCCATCGCCCACCGCCCAGGAGGGTATCGAAGGGCATCAGCGGGTGGTGGCACGGCGGGCTGCTGGCTACGAGTCGGAAATCGCACTTGAAGTCCAGTTCCAAAccc                                                      >  6:230940/1‑149 (MQ=255)                                                                                                gAGTTCAGCGCCAAGGTCGGCGACCTGGACCTGCGCTTCACGCCATCGCCCACCacccgctgatgcccttcgaaaccctcctgggcggtgg                                                                                                               <  6:11424‑M1/91‑38 (MQ=255)                                                                                                gAGTTCAGCGCCAAGGTCGGCGACCTGGACCTGCGCTTCACGCCATCGCCCACCacccgctgatgcccttcgaaaccctcctgggcggtgg                                                                                                               >  5:11424‑M1/1‑54 (MQ=255)                                                                                                  gTTCAGCGCCAAGGTCGGCGACCTGGACCTGCGCTTCACGCCATCGCCCACCGCCCAGGAGGGTATCGAAGGGCATCAGCGGGTGGTGGCACGGCGGGCTGCTGGCTACGAGTCGGAAATCGCCCTAGAAGGCCAGTTCGAAACCCTCa                                                   <  7:48171/149‑1 (MQ=255)                                                                                                    tCAGCGCCAAGGTCGGCGACCTGGACCTGCGCTTCACGCCATCGCCCACCGCCCAGGAGGGTATCGAAGGGCATCAGCGGGTGGTGGCACGGCGGGCTGCTGGCTACGAGTCGGAAATCGCCCTTGAAGGCCAGTTCGaaa                                                         >  4:194529/1‑141 (MQ=255)                                                                                                    tCAGCGCCAAGGTCGGCGACCTGGACCTGCGCTTCACGCCATCGCCCACCGCCCAGGAGGGTATCGAAGGGCATCAGCGGGTGGTGGCACGGCGGGCTGCTGGCTACGAGTCGGAAATCGCCCTTGAAGGCCAGTTCGaaa                                                         <  3:194529/141‑1 (MQ=255)                                                                                                      aGCGCCAAGGTCGGCGACCTGGACCTGCGCTTCACGCCATCGCCCACCGCCCAGGAGGGTATCGAAGGGCATCAGCGGGTGGTGGCACGGCGGGCTGCTGGCTACGAGTCGGAAATCGCCCTTGAAGGCCAGTTCGAAACCCTCAGGGt                                               <  3:276195/149‑1 (MQ=255)                                                                                                         gcCAAGGTCGGCGACCTGGACCTGCGCTTCACGCCATCGCCCACCGCCCAGGAGGGTATCGAAGGGCATCAGCGGGTGGTGGCACGGCGGGCTGCTGGCTACGAGTCGGAAATCGCCCTTGAAGGCCAGTTCGAAACCCTCAGGGTGCg                                            >  5:205890/1‑149 (MQ=255)                                                                                                         gcCAAGGTCGGCGACCTGGACCTGCGCTTCACGCCATCGCCCACCGCCCAGGAGGGTATCGAAGGGCATCAGCGGGTGGTGGCACGGCGGGCTGCTGGCTACGAGTCGGAAATCGCCCTTGAAGGCCAGTTCGAAACCCTCAGGGTGCg                                            >  7:199944/1‑149 (MQ=255)                                                                                                                        ctggacctgCGCTTCACGCCATCGCCCACCGCCCAGGAGGGTATCGAAGGGCATCAGCGGGTGGTGGCACGGCGGGCTGCTGGCTACGAGTCGGAAATCGCCCTTGAAGGCCAGTTCGAAACCCTCAGGGTGCGGGGCCGTGCCGACgg                             <  2:111407/149‑1 (MQ=255)                                                                                                                           gacctgCGCTTCACGCCATCGCCCACCGCCCAGGAGGGTATCGAAGGGCATCAGCGGGTGGTGGCACGGCGGGCTGCTGGCTACGAGTCGGAAATCGCCCTTGAAGGCCAGTTCGAAACCCTCAGGGTGCGGGGCCGTGCCGACGGat                           <  4:189726/148‑1 (MQ=255)                                                                                                                                      cACGCCATCGCCCACCGCCCAGGAGGGTATCGAAGGGCATCAGCGGGTGGTGGCACGGCGGGCTGCTGGCTACGAGTCGGAAATCGCCCTTGAAGGCCAGTTCGAAACCCTCAGGGTGCGGGGCCGTGCCGACg                              <  4:65743/134‑1 (MQ=255)                                                                                                                                      cACGCCATCGCCCACCGCCCAGGAGGGTATCGAAGGGCATCAGCGGGTGGTGGCACGGCGGGCTGCTGGCTACGAGTCGGAAATCGCCCTTGAAGGCCAGTTCGAAACCCTCAGGGTGCGGGGCCGTGCCGACg                              >  3:65743/1‑134 (MQ=255)                                                                                                                                       aCGCCATCGCCCACCGCCCAGGAGGGTATCGAAGGGCATCAGCGGGTGGTGGCACGGCGGGCTGCTGGCTACGAGTCGGAAATCGCCCTTGAAGGCCAGTTCGAAACCCTCAGGGTGCGGGGCCGTGCCGACGGATATGACCCTGCCa               <  8:199944/148‑1 (MQ=255)                                                                                                                                       aCGCCATCGCCCACCGCCCAGGAGGGTATCGAAGGGCATCAGCGGGTGGTGGCACGGCGGGCTGCTGGCTACGAGTCGGAAATCGCCCTTGAAGGCCAGTTCGAAACCCTCAGGGTGCGGGGCCGTGCCGACGGATATGACCCTGCCAg              >  2:101539/1‑149 (MQ=255)                                                                                                                                          ccATCGCCCACCGCCCAGGAGGGTATCGAAGGGCATCAGCGGGTGGTGGCACGGCGGGCTGCTGGCTACGAGTCGGAAATCGCCCTTGAAGGCCAGTTCGAAACCCTCAGGGTGCGGGGCCGTGCCGACGGATATGACCCTGCCAGCaa           <  3:226788/149‑1 (MQ=255)                                                                                                                                           cATCGCCCACCGCCCAGGAGGGTATCGAAGGGCATCAGCGGGTGGTGGCACGGCGGGCTGCTGGCTACGAGTCGGAAATCGCCCTTGAAGGCCAGTTCGAAACCCTCAGGGTGCGGGGCCGTGCCGACGGATATGACCCTGCCAGCAAt          <  1:101539/149‑1 (MQ=255)                                                                                                                                                cccACCGCCCAGGAGGGTATCGAAGAGCATCAGCGGGTggtgggcgatggcgtgaagcgcaggtccaggtcgccgaccttggcgctgaactcacacaaggcgcgcaccgctacgctgtagctcaaggtgtttcgctccagcgcacgtgg     <  7:106647‑M2/149‑112 (MQ=255)                                                                                                                                                 ccACCGCCCAGGAGGGTTTCGAAGGGCATCAGCGGGTggtgggcgatggcgtgaagcgcaggtccaggtcgccgaccttggcgctgaactc                                                              <  6:11424‑M2/91‑55 (MQ=255)                                                                                                                                                 ccACCGCCCAGGAGGGTTTCGAAGGGCATCAGCGGGTggtgggcgatggcgtgaagcgcaggtccaggtcgccgaccttggcgctgaactc                                                              >  5:11424‑M2/1‑37 (MQ=255)                                                                                                                                                 ccACCGCCCAGGAGGGTATCGAAGGGCATCAGCGGGTGGTGGCACGGCGGGCTGCTGGCTACGAGTCGGAAATCGCCCTTGAAGGCCAGTTCGAAACCCTCAGGGTGCGGGGCCGTGCCGACGGATATGACCCTGCCAGCAATCGTCTg    <  3:163314/149‑1 (MQ=255)                                                                                                                                                 ccACCGCCCAGGAGGGTATCGAAGGGCATCAGCGGGTGGTGGCACGGCGGGCTGCTGGCTACGAGTCGGAAATCGCCCTTGAAGGCCAGTTCGAAACCCTCAGGGTGCGGGGCCGTGCCGACGGATATGACCCTGCCAGCAATCGTCTg    >  1:243909/1‑149 (MQ=255)                                                                                                                                                  caccacccgctgatgcccttcgataccctcctgggcggtgggcgatggcgtgaagcgcaggtccaggtcgccgaccttggcgctgaactcacacaaggcgcgcaccgctacgctgtagctcaaggtgtttcgctccagcgcacgtggca   >  5:45063‑M1/1‑4 (MQ=255)                                                                                                                                                  cACCGCCCAGGAGGGTATCGAAGGGCATCAGCGGGTGGTGGCACGGCGGGCTGCTGGCTACGAGTCGGAAATCGCCCTTGAAGGCCAGTTCGTAATCCTCAGGGTGCGGGGCCGTGCCGACGGATATGACCCTGCCAGCAATCGTCTgg   <  5:230940/149‑1 (MQ=255)                                                                                                                                                   accacccgctgatgcccttcgataccctcctgggcggtgggcgatggcgtgaagcgcaggtccaggtcgccgaccttggcgctgaactcacacaaggcgcgcaccgctacgctgtagctcaaggtgtttcgctccagcgcacgtggcac  >  2:305625‑M1/1‑3 (MQ=255)                                                                                                                                                   accacccgctgatgcccttcgataccctcctgggcggtgggcgatggcgtgaagcgcaggtccaggtcgccgaccttggcgctgaactcacacaaggcgcgcaccgctacgctgtagctcaaggtgtttcgctccagcgcacgtggca   >  3:14906‑M1/1‑3 (MQ=255)                                                                                                                                                   aCCGCCCAGGAGGGTATCGAAGGGCATCAGCGGGTGGTGGCACGGCGGGCTGCTGGCTACGAGTCGGAAATCGCCCTTGAAGGCCAGTTCGAAACCCTCAGGGTGCGGGGCCGTGCCGACGGATATGACCCTGCCAGCAATCGTCTGGa  <  6:205890/149‑1 (MQ=255)                                                                                                                                                     cGCCCAGGAGGGTATCGAAGGGCATCAGCGGGTGGTGGCACGGCGGGCTGCTGGCTACGAGTCGGAAATCGCCCTTGAAGGCCAGTTCGAAACCCTCAGGGTGCGGGGCCGTGCCGACGGATATGACCCTGc                 <  2:235119/132‑1 (MQ=255)                                                                                                                                                     cGCCCAGGAGGGTATCGAAGGGCATCAGCGGGTGGTGGCACGGCGCGCTGCTGGCTACGAGTCGGAAATCGCCCTTGAAGGCCAGTTCGAAACCCTCAGGGTGCGGGGCCGTGCCGACGGATATGACCCTGc                 >  1:235119/1‑132 (MQ=255)                                                                                                                                                     |                                                                                                                                                   GCGTTCTGCAGGCAACACGGCCTGCCGGTCGCGGTGTGCCACGTGCGCTGGAGCGAAACACCTTGAGCTACAGCGTAGCGGTGCGCGCCTTGTGTGAGTTCAGCGCCAAGGTCGGCGACCTGGACCTGCGCTTCACGCCATCGCCCACCGCCCAGGAGGGTATCGAAGGGCATCAGCGGGTGGTGGCACGGCGGGCTGCTGGCTACGAGTCGGAAATCGCCCTTGAAGGCCAGTTCGAAACCCTCAGGGTGCGGGGCCGTGCCGACGGATATGACCCTGCCAGCAATCGTCTGGA  >  NC_002947/3241889‑3242183

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.