New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	3314412 =	35 (0.680)	3 (0.060)	3/246	NT	8.9%	coding (459/1503 nt)	proP	osmosensory proline/betaine/H+ permease
	?	NC_002947	3314453 =	28 (0.570)					coding (500/1503 nt)	proP	osmosensory proline/betaine/H+ permease

GCTGCCGAGAAAGCCGCGCTTGCGGTCAGGCGCGTACTCGGCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/3314454‑3314412 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ctcggcaGCTGGCTGGATTTCGGTTCGATTGCCGGCTTTGTACTGGGCGCAGGGGTGGTGGTGCTCATTTCCACGGTGCTGGGTGAAGAAAAATTCCTCGACTGGGGCTGGCGCCTGCCGTTCTTCCTGGCCCTGCCGCTG  >  NC_002947/3314453‑3314586                                                                                                                                                                                   GCTGCCGAGAAAGCCGCGCTTGCGGTCAGGCGCGTACTCGGCAGCTGGCTGGATTTCGGTTCGCTTGCCGGCTTTGTACTGGGCGCAGGGGTGGTGGTG                                                                                >  5:233318/1‑99 GCTGCCGAGAAAGCCGCGCTTGCGGTCAGGCGCGTACTCGGCAGCTGGCTGGATTTCGGTTCGATTGCCGGCTTTGTACTGGGCGCAGGGGTGGTGGTG                                                                                <  6:233318/99‑1  CTGCCGAGAAAGCCGCGCTTGCGGTCAGGCGCGTACTCGGCAGCTGGCTGGATTTCGGTTCGATTGCCGGCTTTGTACTGGGCGCAGGGGTGGTGGTGCTCATTTCCACGGTGCTGGGTGAAGAAAAATTCCTCGACTGGGGCTGGCGC                             >  8:41483/1‑149                                      TCGGCAGCTGGCTGGATTTCGGTTCGATTGCCGGCTTTGTACTGGGCGCAGGGGTGGTGGTGCTCATTTCCACGGTGCTGGGTGAAGAAAAATTCCTCGACTGGGGCTGGCGCCTGCCGTTCTTCCTGGCCCTGCCGCTG  <  7:273756/140‑1                                      TCGGCAGCTGGCTGGATTTCGGTTCGATTGCCGGCTTTGTACTGGGCGCAGGGGTGGTGGTGCTCATTTCCACGGTGCTGGGTGAAGAAAAATTCCTCGACTGGGGCTGGCGCCTGCCGTTCTTCCTGGCCCTGCCGCTG  >  8:273756/1‑140                                                                                                                                                                                   GCTGCCGAGAAAGCCGCGCTTGCGGTCAGGCGCGTACTCGGCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/3314454‑3314412 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ctcggcaGCTGGCTGGATTTCGGTTCGATTGCCGGCTTTGTACTGGGCGCAGGGGTGGTGGTGCTCATTTCCACGGTGCTGGGTGAAGAAAAATTCCTCGACTGGGGCTGGCGCCTGCCGTTCTTCCTGGCCCTGCCGCTG  >  NC_002947/3314453‑3314586

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.