New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	3314412 =	35 (0.680)	3 (0.060)	3/246	NT	8.9%	coding (459/1503 nt)	proP	osmosensory proline/betaine/H+ permease
	?	NC_002947	3314453 =	28 (0.570)					coding (500/1503 nt)	proP	osmosensory proline/betaine/H+ permease

GTGATCATGTCCCTGAGCACCTTCGCCATCGGCCTGATACCGTCCTATGCAAGCATTGGTATCTGGGCGCCGATCCTGTTGCTGCTGGCCAAGATGGCCCAGGGCTTTTCGGTGGGTGGCGAATACACCGGTGCCTCGATTTTCGTTGCCGAGTACGCGCCTGACCGCAAGCGCGGCTTTCTCGGCAGCTGGCTGGATTTCGGTTCGATTGCCGGCTTTGTACTGGGCGCAGGGGTGGTGGTGCTCATTTCCACGGTGCTGGGTGAAGAAAAATTCCTCGACTGGGGC  >  NC_002947/3314266‑3314553                                                                                                                                                   |                                                                                                                                              gTGATCATGTCCCTGAGCACCTTCGCCATCGGCCTGATACCGTCCTATGCAAGCATTGGTATCTGGGCGCCGATCCTGTTGCTGCTGGCCAAGATGGCCCAGGGCTTTTCGGTGGGTGGCGAATACACCGGTGCCTCGATTTTCGTTg                                                                                                                                              <  2:254668/148‑1 (MQ=255)      cATGTCCCTGAGCACCTTCGCCATCGGCCTGATACCGTCCTATGCAAGCATTGGTATCTGGGCGCCGATCCTGTTGCTGCTGGCCAAGATGGCCCAGGGCTTTTCGGTGGGTGGCGAATACACCGGTGCCTCGATTTTCGTTGCCGAg                                                                                                                                         >  8:153741/1‑148 (MQ=255)             cagcggcagggccaggaagaacggcaggcgccagccccagtcgaggaatttttcttcacccagcaccgtggaaatgagcaccaccacccctgcgcccagtacaaagccggcaatcgaaccgaaatccagccagcTGCCGa                                                                                                                                          <  7:273756‑M1/6‑1 (MQ=255)             cagcggcagggccaggaagaacggcaggcgccagccccagtcgaggaatttttcttcacccagcaccgtggaaatgagcaccaccacccctgcgcccagtacaaagccggcaatcgaaccgaaatccagccagcTGCCGa                                                                                                                                          >  8:273756‑M1/135‑140 (MQ=255)               gAGCACCTTCGCCATCGGCCTGATACCGTCCTATGCAAGCATTGGTATCTGGGCGCCGATCCTGTTGCTGCTGGCCAAGATGGCCCAGGGCTTTTCGGTGGGTGGCGAATACACCGGTGCCTCGATTTTCGTTGCCGAGTACGCGCCt                                                                                                                                >  3:131799/1‑148 (MQ=255)                   aCCTTCGCCATCGGCCTGATACCGTCCTATGCAAGCATTGGTATCTGGGCGCCGATCCTGTTGCTGCTGGCCAAGATGGCCCAGGGCTTTTCGGTGGGTGGCGAATACACCGGTGCCTCGATTTTCGTTGCCGAGTACGCGCCTGACCg                                                                                                                           >  2:53644/1‑149 (MQ=255)                     cTTCGCCATCGGCCTGATACCGTCCTATGCAAGCATTGGTATCTGGGCGCCGATCCTGTTGCTGCTGGCCAAGATGGCCCAGGGCTTTTCGGTGGGTGGCGAATACACCGGTGCCTCGATTTTCGTTGCCGAGTACGCGCCTGACCGc                                                                                                                          >  2:121965/1‑148 (MQ=255)                           cATCGGCCTGATACCGTCCTATGCAAGCATTGGTATCTGGGCGCCGATCCTGTTGCTGCTGGCCAAGATGGCCCAGGGCTTTTCGGTGGGTGGCGAATACACCGGTGCCTCGATTTTCGTTGCCGAGTACGCGCCTGACCGCAAGcgcg                                                                                                                   >  8:76213/1‑149 (MQ=255)                           cATCGGCCTGATACCGTCCTATGCAAGCATTGGTATCTGGGCGCCGATCCTGTTGCTGCTGGCCAAGATGGCCCAGGGCTTTTCGGTGGGTGGCGAATACACCGGTGCCTCGATTTTCGTTGCCGAGTACGCGCCTGACCGCAAGcgcg                                                                                                                   <  7:303132/149‑1 (MQ=255)                                 ccTGATACCGTCCTATGCAAGCATTGGTATCTGGGCGCCGAACCTGTTGCTGCTGGCCAAGATGGCCCACGGCTTTTCGGTGGGTGGCGAATACACCGGTGCCTCGATTTTCGTTGCCGAGTACGAGCCTGACCGCAAGCGCGGCTTtc                                                                                                             >  7:178642/1‑149 (MQ=255)                                     aTACCGTCCTATGCAAGCATTGGTATCTGGGCGCCGATCCTGTTGCTGCTGGCCAAGATGGCCCAGGGCTTTTCGGTGGGTGGCGAATACACCGGTGCCTCGATTTTCGTTGCCGAGTACGCGCCTGACCGCAAGCGCGGCTTtctc                                                                                                           <  7:76213/147‑1 (MQ=255)                                        gcgccagccccagtcgaggaatttttcttcacccagcaccgtggaaatgagcaccaccacccctgcgcccagtacaaagccggcaatcgaaccgaaatccagccagcTGCCGAGTACGCGCCTGACCGCAAGCGCGGCTTTCTCGGCAg                                                                                                      >  8:41483‑M1/108‑149 (MQ=255)                                          gTCCTATGCAAGCATTGGTATCTGGGCGCCGATCCTGTTGCTGCTGGCCAAGATGGCCCAGGGCTTTTCGGTGGGTGGCGAATACACCGGTGCCTCGATTTTCGTTGCCGAGTACGCGCCTGACCGCAAGCGCGGCTTTCTCGGCAgct                                                                                                    <  1:53644/149‑1 (MQ=255)                                           tCCTATGCAAGCATTGGTATCTGGGCGCCGATCCTGTTGCTGCTGGCCAAGATGGCCCAGGGCTTTTCGGTGGGTGGCGAATACACCGGTGCCTCGATTTTCGTTGCCGAGTACGCGCCTGACCGCAAGCGCGGCTTTCTCGGCAgctg                                                                                                   >  8:269467/1‑149 (MQ=255)                                             cTATGCAAGCATTGGTATCTGGGCGCCGATCCTGTTGCTGCTGGCCAAGATGGCCCAGGGCTTTTCGGTGGGTGGCGAATACACCGGTGCCTCGATTTTCGTTGCCGAGTACGCGCCTGACCGCAAGCGCGGCTTTCTCGGCAgctggc                                                                                                 >  6:263671/1‑149 (MQ=255)                                                tGCAAGCATTGGTATCTGGGCGCCGATCCTGTTGCTGCTGGCCAAGATGGCCCAGGGCTTTTCGGTGGGTGGCGAATACACCGGTGCCTCGATTTTCGTTGCCGAGTACGCGCCTGACCGCAAGCGCGGCTTTCTCGGCAgctggct                                                                                                <  1:16471/147‑1 (MQ=255)                                                   aaGCATTGGTATCTGGGCGCCGATCCTGTTGCTGCTGGCCAAGATGGCCCAGGGCTTTTCGGTGGGTGGCGAATACACCGGTGCCTCGATTTTCGTTGCCGAGTACGCGCCTGACCGCAAGCGCGGCTTTCTCGGCAGCTGGCTGGAtt                                                                                           >  1:7305/1‑149 (MQ=255)                                                    aGCATTGGTATCTGGGCGCCGATCCTGTTGCTGCTGGCCAAGATGGCCCAGGGCTTTTCGGTGGGTGGCGAATACACCGGTGCCTCGATTTTCGTTGCCGAGTACGCGCCTGACCGCAAGCGCGGCTTTCTCGGCAGCTGGCTGGAttt                                                                                          <  7:153741/149‑1 (MQ=255)                                                     gCATTGGTATCTGGGCGCCGATCCTGTTGCTGCTGGCCAAGATGGCCCAGGGCTTTTCGGTGGGTGGCGAATACACCGGTGCCTCGATTTTCGTTGCCGAGTACGCGCCTGACCGCAAGCGCGGCTTTCTCGGCAGCTGGCTGGATTTc                                                                                         <  5:263671/149‑1 (MQ=255)                                                          ggTATCTGGGCGCCGATCCTGTTGCTGCTGGCCAAGATGGCCCAGGGCTTTTCGGTGGGTGGCGAATACACCGGTGCCTCGATTTTCGTTGCCGAGTACGCGCCTGACCGCAAGCGCGGCTTTCTCGGCAGCTGGCTGGATTTCGGtt                                                                                     <  7:269467/148‑1 (MQ=255)                                                                       cGATCCTGTTGCTGCTGGCCAAGATGGCCCAGGGCTTTTCGGTGGGTGGCGAATACACCGGTGCCTCGATTTTCGTTGCCGAGTACGCGCCTGACCGCAAGCGCGGCTTTCTCGGCAGCTGGCTGGATTTCGGTTCGATTGCCGGCttt                                                                       >  4:98659/1‑149 (MQ=255)                                                                            cTGTTGCTGCTGGCCAAGATGGCCCAGGGCTTTTCGGTGGGTGGCGAATACACCGGTTCCTCGATTTTCGTTGCCGAGTACGCGCCTGAGCGCAAGCGCTGCTTTCTCGGCAGCTGGCTGGATTTCGGTTCGATTGCCGGCTTTGTACt                                                                  <  5:69699/149‑1 (MQ=255)                                                                            cTGTTGCTGCTGGCCAAGATGGCCCAGGGCTTTTCGGTGGGTGGCGAATACACCGGTGCCTCGATTTTCGTTGCCGAGTACGCGCCTGACCGCAAGCGCGGCTTTCTCGGCAGCTGGCTGGATTTCGGTTCGATTGCCGGCTTTGTACt                                                                  <  4:131799/149‑1 (MQ=255)                                                                               ttGCTGCTGGCCAAGATGGCCCAGGGCTTTTCGGTGGGTGGCGAATACACCGGTGCCTCGATTTTCGTTGCCGAGTACGCGCCTGACCGCAAGCGCGGCTTTCTCGGCAGCTGGCTGGATTTCGGTTCGATTGCCGGCTTTGTACTg                                                                 <  2:225809/147‑1 (MQ=255)                                                                                   tgctgGCCAAGATGGCCCAGGGCTTTTCGGTGGGTGGCGAATACACCGGTGCCTCGATTATCGTTGCCGAGTACGCGCCTGACCGCAAGCGCGGCTTTCTCGTCAGCTGGCTGGATTTCGGTTCGATTGCCGGCTTTGTACTGGgcg                                                             >  6:245270/1‑147 (MQ=255)                                                                                        gCCAAGATGGCCCAGGGCTTTTCGGTGGGTGGCGAATACACCGGTGCCTCGATTTTCGTTGCCGAGTACGCGCCTGACCGCAAGCGCGGCTTTCTCGGCAGCTGGCTGGATTTCGGTTCGATTGCCGGCTTTGTACTGGGCGCAggg                                                        <  1:121965/147‑1 (MQ=255)                                                                                        gCCAAGATGGCCCAGGGCTTTTCGGTGGGTGGCGAATACACCGGTGCCTCGATTTTCGTTGCCGAGTACGCGCCTGACCGCAAGCGCGGCTTTCTCGGCAGCTGGCTGGATTTCGGTTCGATTGCCGGCTTTGTACTGGGCGCAggg                                                        <  5:142713/147‑1 (MQ=255)                                                                                          cAAGATGGCCCAGGGCTTTTCGGTGGGTGGCGAATACACCGGTGCCTCGATTTTCGTTGCCGAGTACGCGCCTGACCGCAAGCGCGGCTTTCTCGGCAGCTGGCTGGATTTCGGTTCGATTGCCGGCTTTGTACTGGGCGCAGGggtgg                                                    >  6:301107/1‑149 (MQ=255)                                                                                           caccaccacccctgcgcccagtacaaagccggcaatcgaaccgaaatccagccagcTGCCGAGTACGCGCCTGACCGCAAGCGCGGCTTTCTCGGCAgc                                                                                                     <  6:233318‑M1/43‑1 (MQ=255)                                                                                           caccaccacccctgcgcccagtacaaagccggcaagcgaaccgaaatccagccagcTGCCGAGTACGCGCCTGACCGCAAGCGCGGCTTTCTCGGCAgc                                                                                                     >  5:233318‑M1/57‑99 (MQ=255)                                                                                               tGGCCCAGGGCTTTTCGGTGGGTGGCGAATACACCGGTGCCTCGATTTTCGTTGCCGAGTACGCGCCTGACCGCAAGCGCGGCTTTCTCGGCAGCTGGCTGGATTTCGGTTCGATTGCCGGCTTTGTACTGGGCGCAGGGgtggtggtg                                               <  6:71180/149‑1 (MQ=255)                                                                                                  cccAGGGCTTTTCGGTGGGTGGCGAATACACCGGTGCCTCGATTTTCGTTGCCGAGTACGCGCCTGACCGCAAGCGCGGCTTTCTCGGCAGCTGGCTGGATTTCGGTTc                                                                                    <  2:276516/109‑1 (MQ=255)                                                                                                  cccAGGGCTTTTCGGTGGGTGGCGAATACACCGGTGCCTCGATTTTCGTTGCCGAGTACGCGCCTGACCGCAAGCGCGGCTTTCTCGGCAGCTGGCTGGATTTCGGTTc                                                                                    >  1:276516/1‑109 (MQ=255)                                                                                                        gCTTTTCGGTCGGTGGCGAATACACCGGTGCCTCGATTTTCGTTGCCGAGTACGCGCCTGACCGCAAGCGCGGCTTTCTCGGCAGCTGGCTGGATTTCGGTTCGATTGCCGGCTTTGTACTGGGCGCAGGGGTGGTGGTGCTCATTTcc                                      <  2:7305/149‑1 (MQ=255)                                                                                                          ttttCGGTGGGTGGCGAATACACCGGTGCCTCGATTTTCGTTGCCGAGTACGCGCCTGACCGCAAGCGCGGCTTTCTCGGCAGCTGGCTGGATTTCGGTTCGATTGCCGGCTTTGTACTGGGCGCAGGGGTGGTGGTGCTCATTTCCAc                                    >  6:173906/1‑149 (MQ=255)                                                                                                                    gtggCGAATACACCGGTGCCTCGATTTTCGTTGCCGAGTACGCGCCTGACCGCAAGCGCGGCTTTCTCGGCAGCTGGCTGGATTTCGGTTCGATTGCCGGCTTTGTACTGGGCGCAGGGGTGGTGGTGCTCATTTCCACGGTGCTGGGt                          <  5:301107/149‑1 (MQ=255)                                                                                                                            tACACCGGTGCCTCGATTTTCGTTGCCGATTACGCGCCTGACCGCAAGCGCGGCTTTCTCGGCAGCTGTCTGGATTTCGGTTCGATTGCCGGCTTTGTACTGTGCGCAGGGGTGGTGGTGCTCATTTCCACGGTGCTGGGTGAAGaaaa                  <  5:245270/149‑1 (MQ=255)                                                                                                                                       cTCGATTTTCGTTGCCGAGTACGCGCCTGACCGCAAGCGCGGCTTTCTCGGCAGCTGGCTGGATTTCGGTTCGATTGCCGGCTTTGTACTGGGCGCAGGGGTGGTGGTGCTCATTTCCACGGTGCTGGGTg                         <  6:295214/131‑1 (MQ=255)                                                                                                                                       cTCGATTTTCGTTGCCGAGTACGCGCCTGACCGCAAGCGCGGCTTTCTCGGCAGCTGGCTGGATTTCGGTTCGATTGCCGGCTTTGTACTGGGCGCAGGGGTGGTGGTGCTCATTTCCACGGTGCTGGGTg                         >  5:295214/1‑131 (MQ=255)                                                                                                                                          gATTTTCGTTGCCGAGTAGGCGCTGGAGGTCTATCTCGGGTTTCTGGGCTGGTGGCTGGATTTCGGTTCGATTGCCGGCTTTGTTCTGTGGTCTGTGTTGGTGGAGCTCTTTTGGTCGGTGCTGGGTTTTGATTAATTCGTCGAGTgg     <  8:178642/148‑1 (MQ=255)                                                                                                                                            ttttCGTTGCCGAGTACGCGCCTGACCGCAAGCGCGGCTTTCTCGGCAGCTGGCTGGATTTCGGTTCGATTGCCGGCTTTGTACTGGGCGCAGGGGTGGTGGTGCTCATTTCCACGGTGCTGGGTGAAGAAAAATTCCTCGACTGGGGc  >  1:153516/1‑149 (MQ=255)                                                                                                                                                   |                                                                                                                                              GTGATCATGTCCCTGAGCACCTTCGCCATCGGCCTGATACCGTCCTATGCAAGCATTGGTATCTGGGCGCCGATCCTGTTGCTGCTGGCCAAGATGGCCCAGGGCTTTTCGGTGGGTGGCGAATACACCGGTGCCTCGATTTTCGTTGCCGAGTACGCGCCTGACCGCAAGCGCGGCTTTCTCGGCAGCTGGCTGGATTTCGGTTCGATTGCCGGCTTTGTACTGGGCGCAGGGGTGGTGGTGCTCATTTCCACGGTGCTGGGTGAAGAAAAATTCCTCGACTGGGGC  >  NC_002947/3314266‑3314553

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.