New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	3314412 =	35 (0.680)	3 (0.060)	3/246	NT	8.9%	coding (459/1503 nt)	proP	osmosensory proline/betaine/H+ permease
	?	NC_002947	3314453 =	28 (0.570)					coding (500/1503 nt)	proP	osmosensory proline/betaine/H+ permease

CCGTCCTATGCAAGCATTGGTATCTGGGCGCCGATCCTGTTGCTGCTGGCCAAGATGGCCCAGGGCTTTTCGGTGGGTGGCGAATACACCGGTGCCTCGATTTTCGTTGCCGAGTACGCGCCTGACCGCAAGCGCGGCTTTCTCGGCAGCTGGCTGGATTTCGGTTCGATTGCCGGCTTTGTACTGGGCGCAGGGGTGGTGGTGCTCATTTCCACGGTGCTGGGTGAAGAAAAATTCCTCGACTGGGGCTGGCGCCTGCCGTTCTTCCTGGCCCTGCCGCTGGG  >  NC_002947/3314305‑3314588                                                                                                                                                     |                                                                                                                                        gcgccagccccagtcgaggaatttttcttcacccagcaccgtggaaatgagcaccaccacccctgcgcccagtacaaagccggcaatcgaaccgaaatccagccagcTGCCGAGTACGCGCCTGACCGCAAGCGCGGCTTTCTCGGCAg                                                                                                                                         >  8:41483‑M1/108‑149 (MQ=255)   gTCCTATGCAAGCATTGGTATCTGGGCGCCGATCCTGTTGCTGCTGGCCAAGATGGCCCAGGGCTTTTCGGTGGGTGGCGAATACACCGGTGCCTCGATTTTCGTTGCCGAGTACGCGCCTGACCGCAAGCGCGGCTTTCTCGGCAgct                                                                                                                                       <  1:53644/149‑1 (MQ=255)    tCCTATGCAAGCATTGGTATCTGGGCGCCGATCCTGTTGCTGCTGGCCAAGATGGCCCAGGGCTTTTCGGTGGGTGGCGAATACACCGGTGCCTCGATTTTCGTTGCCGAGTACGCGCCTGACCGCAAGCGCGGCTTTCTCGGCAgctg                                                                                                                                      >  8:269467/1‑149 (MQ=255)      cTATGCAAGCATTGGTATCTGGGCGCCGATCCTGTTGCTGCTGGCCAAGATGGCCCAGGGCTTTTCGGTGGGTGGCGAATACACCGGTGCCTCGATTTTCGTTGCCGAGTACGCGCCTGACCGCAAGCGCGGCTTTCTCGGCAgctggc                                                                                                                                    >  6:263671/1‑149 (MQ=255)         tGCAAGCATTGGTATCTGGGCGCCGATCCTGTTGCTGCTGGCCAAGATGGCCCAGGGCTTTTCGGTGGGTGGCGAATACACCGGTGCCTCGATTTTCGTTGCCGAGTACGCGCCTGACCGCAAGCGCGGCTTTCTCGGCAgctggct                                                                                                                                   <  1:16471/147‑1 (MQ=255)            aaGCATTGGTATCTGGGCGCCGATCCTGTTGCTGCTGGCCAAGATGGCCCAGGGCTTTTCGGTGGGTGGCGAATACACCGGTGCCTCGATTTTCGTTGCCGAGTACGCGCCTGACCGCAAGCGCGGCTTTCTCGGCAGCTGGCTGGAtt                                                                                                                              >  1:7305/1‑149 (MQ=255)             aGCATTGGTATCTGGGCGCCGATCCTGTTGCTGCTGGCCAAGATGGCCCAGGGCTTTTCGGTGGGTGGCGAATACACCGGTGCCTCGATTTTCGTTGCCGAGTACGCGCCTGACCGCAAGCGCGGCTTTCTCGGCAGCTGGCTGGAttt                                                                                                                             <  7:153741/149‑1 (MQ=255)              gCATTGGTATCTGGGCGCCGATCCTGTTGCTGCTGGCCAAGATGGCCCAGGGCTTTTCGGTGGGTGGCGAATACACCGGTGCCTCGATTTTCGTTGCCGAGTACGCGCCTGACCGCAAGCGCGGCTTTCTCGGCAGCTGGCTGGATTTc                                                                                                                            <  5:263671/149‑1 (MQ=255)                   ggTATCTGGGCGCCGATCCTGTTGCTGCTGGCCAAGATGGCCCAGGGCTTTTCGGTGGGTGGCGAATACACCGGTGCCTCGATTTTCGTTGCCGAGTACGCGCCTGACCGCAAGCGCGGCTTTCTCGGCAGCTGGCTGGATTTCGGtt                                                                                                                        <  7:269467/148‑1 (MQ=255)                                cGATCCTGTTGCTGCTGGCCAAGATGGCCCAGGGCTTTTCGGTGGGTGGCGAATACACCGGTGCCTCGATTTTCGTTGCCGAGTACGCGCCTGACCGCAAGCGCGGCTTTCTCGGCAGCTGGCTGGATTTCGGTTCGATTGCCGGCttt                                                                                                          >  4:98659/1‑149 (MQ=255)                                     cTGTTGCTGCTGGCCAAGATGGCCCAGGGCTTTTCGGTGGGTGGCGAATACACCGGTTCCTCGATTTTCGTTGCCGAGTACGCGCCTGAGCGCAAGCGCTGCTTTCTCGGCAGCTGGCTGGATTTCGGTTCGATTGCCGGCTTTGTACt                                                                                                     <  5:69699/149‑1 (MQ=255)                                     cTGTTGCTGCTGGCCAAGATGGCCCAGGGCTTTTCGGTGGGTGGCGAATACACCGGTGCCTCGATTTTCGTTGCCGAGTACGCGCCTGACCGCAAGCGCGGCTTTCTCGGCAGCTGGCTGGATTTCGGTTCGATTGCCGGCTTTGTACt                                                                                                     <  4:131799/149‑1 (MQ=255)                                        ttGCTGCTGGCCAAGATGGCCCAGGGCTTTTCGGTGGGTGGCGAATACACCGGTGCCTCGATTTTCGTTGCCGAGTACGCGCCTGACCGCAAGCGCGGCTTTCTCGGCAGCTGGCTGGATTTCGGTTCGATTGCCGGCTTTGTACTg                                                                                                    <  2:225809/147‑1 (MQ=255)                                            tgctgGCCAAGATGGCCCAGGGCTTTTCGGTGGGTGGCGAATACACCGGTGCCTCGATTATCGTTGCCGAGTACGCGCCTGACCGCAAGCGCGGCTTTCTCGTCAGCTGGCTGGATTTCGGTTCGATTGCCGGCTTTGTACTGGgcg                                                                                                >  6:245270/1‑147 (MQ=255)                                                 gCCAAGATGGCCCAGGGCTTTTCGGTGGGTGGCGAATACACCGGTGCCTCGATTTTCGTTGCCGAGTACGCGCCTGACCGCAAGCGCGGCTTTCTCGGCAGCTGGCTGGATTTCGGTTCGATTGCCGGCTTTGTACTGGGCGCAggg                                                                                           <  1:121965/147‑1 (MQ=255)                                                 gCCAAGATGGCCCAGGGCTTTTCGGTGGGTGGCGAATACACCGGTGCCTCGATTTTCGTTGCCGAGTACGCGCCTGACCGCAAGCGCGGCTTTCTCGGCAGCTGGCTGGATTTCGGTTCGATTGCCGGCTTTGTACTGGGCGCAggg                                                                                           <  5:142713/147‑1 (MQ=255)                                                   cAAGATGGCCCAGGGCTTTTCGGTGGGTGGCGAATACACCGGTGCCTCGATTTTCGTTGCCGAGTACGCGCCTGACCGCAAGCGCGGCTTTCTCGGCAGCTGGCTGGATTTCGGTTCGATTGCCGGCTTTGTACTGGGCGCAGGggtgg                                                                                       >  6:301107/1‑149 (MQ=255)                                                    caccaccacccctgcgcccagtacaaagccggcaatcgaaccgaaatccagccagcTGCCGAGTACGCGCCTGACCGCAAGCGCGGCTTTCTCGGCAgc                                                                                                                                        <  6:233318‑M1/43‑1 (MQ=255)                                                    caccaccacccctgcgcccagtacaaagccggcaagcgaaccgaaatccagccagcTGCCGAGTACGCGCCTGACCGCAAGCGCGGCTTTCTCGGCAgc                                                                                                                                        >  5:233318‑M1/57‑99 (MQ=255)                                                        tGGCCCAGGGCTTTTCGGTGGGTGGCGAATACACCGGTGCCTCGATTTTCGTTGCCGAGTACGCGCCTGACCGCAAGCGCGGCTTTCTCGGCAGCTGGCTGGATTTCGGTTCGATTGCCGGCTTTGTACTGGGCGCAGGGgtggtggtg                                                                                  <  6:71180/149‑1 (MQ=255)                                                           cccAGGGCTTTTCGGTGGGTGGCGAATACACCGGTGCCTCGATTTTCGTTGCCGAGTACGCGCCTGACCGCAAGCGCGGCTTTCTCGGCAGCTGGCTGGATTTCGGTTc                                                                                                                       <  2:276516/109‑1 (MQ=255)                                                           cccAGGGCTTTTCGGTGGGTGGCGAATACACCGGTGCCTCGATTTTCGTTGCCGAGTACGCGCCTGACCGCAAGCGCGGCTTTCTCGGCAGCTGGCTGGATTTCGGTTc                                                                                                                       >  1:276516/1‑109 (MQ=255)                                                                 gCTTTTCGGTCGGTGGCGAATACACCGGTGCCTCGATTTTCGTTGCCGAGTACGCGCCTGACCGCAAGCGCGGCTTTCTCGGCAGCTGGCTGGATTTCGGTTCGATTGCCGGCTTTGTACTGGGCGCAGGGGTGGTGGTGCTCATTTcc                                                                         <  2:7305/149‑1 (MQ=255)                                                                   ttttCGGTGGGTGGCGAATACACCGGTGCCTCGATTTTCGTTGCCGAGTACGCGCCTGACCGCAAGCGCGGCTTTCTCGGCAGCTGGCTGGATTTCGGTTCGATTGCCGGCTTTGTACTGGGCGCAGGGGTGGTGGTGCTCATTTCCAc                                                                       >  6:173906/1‑149 (MQ=255)                                                                             gtggCGAATACACCGGTGCCTCGATTTTCGTTGCCGAGTACGCGCCTGACCGCAAGCGCGGCTTTCTCGGCAGCTGGCTGGATTTCGGTTCGATTGCCGGCTTTGTACTGGGCGCAGGGGTGGTGGTGCTCATTTCCACGGTGCTGGGt                                                             <  5:301107/149‑1 (MQ=255)                                                                                     tACACCGGTGCCTCGATTTTCGTTGCCGATTACGCGCCTGACCGCAAGCGCGGCTTTCTCGGCAGCTGTCTGGATTTCGGTTCGATTGCCGGCTTTGTACTGTGCGCAGGGGTGGTGGTGCTCATTTCCACGGTGCTGGGTGAAGaaaa                                                     <  5:245270/149‑1 (MQ=255)                                                                                                cTCGATTTTCGTTGCCGAGTACGCGCCTGACCGCAAGCGCGGCTTTCTCGGCAGCTGGCTGGATTTCGGTTCGATTGCCGGCTTTGTACTGGGCGCAGGGGTGGTGGTGCTCATTTCCACGGTGCTGGGTg                                                            >  5:295214/1‑131 (MQ=255)                                                                                                cTCGATTTTCGTTGCCGAGTACGCGCCTGACCGCAAGCGCGGCTTTCTCGGCAGCTGGCTGGATTTCGGTTCGATTGCCGGCTTTGTACTGGGCGCAGGGGTGGTGGTGCTCATTTCCACGGTGCTGGGTg                                                            <  6:295214/131‑1 (MQ=255)                                                                                                   gATTTTCGTTGCCGAGTAGGCGCTGGAGGTCTATCTCGGGTTTCTGGGCTGGTGGCTGGATTTCGGTTCGATTGCCGGCTTTGTTCTGTGGTCTGTGTTGGTGGAGCTCTTTTGGTCGGTGCTGGGTTTTGATTAATTCGTCGAGTgg                                        <  8:178642/148‑1 (MQ=255)                                                                                                     ttttCGTTGCCGAGTACGCGCCTGACCGCAAGCGCGGCTTTCTCGGCAGCTGGCTGGATTTCGGTTCGATTGCCGGCTTTGTACTGGGCGCAGGGGTGGTGGTGCTCATTTCCACGGTGCTGGGTGAAGAAAAATTCCTCGACTGGGGc                                     >  1:153516/1‑149 (MQ=255)                                                                                                          gctgccgagaaagccgcgcttgcggtcaggcgcgtactcggcaGCTGGCTGGATTTCGGTTCGCTTGCCGGCTTTGTACTGGGCGCAGGGgtggtggtg                                                                                  >  5:233318‑M2/44‑99 (MQ=255)                                                                                                          gctgccgagaaagccgcgcttgcggtcaggcgcgtactcggcaGCTGGCTGGATTTCGGTTCGATTGCCGGCTTTGTACTGGGCGCAGGGgtggtggtg                                                                                  <  6:233318‑M2/56‑1 (MQ=255)                                                                                                           ctgccgagaaagccgcgcttgcggtcaggcgcgtactcggcaGCTGGCTGGATTTCGGTTCGATTGCCGGCTTTGTACTGGGCGCAGGGGTGGTGGTGCTCATTTCCACGGTGCTGGGTGAAGAAAAATTCCTCGACTGGGGCTGgcgc                               >  8:41483‑M2/43‑149 (MQ=255)                                                                                                                        gcCTGACCGCAAGCGCGGCTTTCTCGGCAGCTGGCTGGATTTCGGTTCGATTGCCGGCTTTGTACTGGGCGCAGGGGTGGTGGTGCTCATTTCCACGGTGCTGGGTGAAGAAAAATTCCTCGACTGGGGCTGGCGCCTGCCGTTCTTcc                  >  6:201458/1‑149 (MQ=255)                                                                                                                            gACCGCAAGCGCGGCTTTCTCGGCAGCTGGCTGGATTTCGGTTCGATTGCCGGCTTTGTACTGGGCGCAGGGGTGGTGGTGCTCATTTCCACGGTGCTGGGTGAAGAAAAATTCCTCGACTGGGGCTGGCGCCTGCCGTTCTTCCTGGc              >  8:204227/1‑149 (MQ=255)                                                                                                                                        ggCTTTCTCGGCAGCTGGCTGGATTTCGGTTCGATTGCCGGCTTTGTACTGGGCGCAGGGGTGGTGGTGCTCATTTCCACGGTGCTGGGTGAAGAAAAATTCCTCGACTGGGGCTGGCGCCTGCCGTTCTTCCTGGCCCTGCCGCTggg  <  5:173906/149‑1 (MQ=255)                                                                                                                                               tcggcaGCTGGCTGGATTTCGGTTCGATTGCCGGCTTTGTACTGGGCGCAGGGGTGGTGGTGCTCATTTCCACGGTGCTGGGTGAAGAAAAATTCCTCGACTGGGGCTGGCGCCTGCCGTTCTTCCTGGCCCTGCCGCTg    <  7:273756‑M2/134‑1 (MQ=255)                                                                                                                                               tcggcaGCTGGCTGGATTTCGGTTCGATTGCCGGCTTTGTACTGGGCGCAGGGGTGGTGGTGCTCATTTCCACGGTGCTGGGTGAAGAAAAATTCCTCGACTGGGGCTGGCGCCTGCCGTTCTTCCTGGCCCTGCCGCTg    >  8:273756‑M2/7‑140 (MQ=255)                                                                                                                                                     |                                                                                                                                        CCGTCCTATGCAAGCATTGGTATCTGGGCGCCGATCCTGTTGCTGCTGGCCAAGATGGCCCAGGGCTTTTCGGTGGGTGGCGAATACACCGGTGCCTCGATTTTCGTTGCCGAGTACGCGCCTGACCGCAAGCGCGGCTTTCTCGGCAGCTGGCTGGATTTCGGTTCGATTGCCGGCTTTGTACTGGGCGCAGGGGTGGTGGTGCTCATTTCCACGGTGCTGGGTGAAGAAAAATTCCTCGACTGGGGCTGGCGCCTGCCGTTCTTCCTGGCCCTGCCGCTGGG  >  NC_002947/3314305‑3314588

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.