New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	3381881 =	38 (0.740)	3 (0.060)	3/248	NT	8.5%	coding (527/657 nt)	PP_2983	hypothetical protein
	?	NC_002947	3381900 =	28 (0.570)					coding (546/657 nt)	PP_2983	hypothetical protein

CAGGAGCGCGCCAAAGCTTTGTTTACGATCCAGGCGTGGCATCTCGCCTATCCTCCAGGTACTTCGCTGTGACCAATTTTAGGCAGCCTTGCATTGCACTTCGGTTGCCCACGGCATAATCGATTGCCTCTGTTGCCAGTGTAACAAACTGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/3382033‑3381881 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑actggcAACAGAGGCAATCGATTATGCCGTGGGCAACCGAAGTGCAATGCAAGGCTGCCTAAAATTGGTCACAGCGAAGTACCTGGAGGATAGGCGAGATGCCACGCCTGGATCGTAAACAAAGCTTTGGCGCGCTCCTGGAGACTGTCAC  >  NC_002947/3381900‑3382044                                                                                                                                                                                                                                                                                                            CAGGAGCGCGCCAAAGCTTTGTTTACGATCCAGGCGTGGCATCTCGCCTATCCTCCAGGTACTTCGCTGTGACCAATTTTAGGCAGCCTTGCATTGCACTTCGGTTGCCCACGGCATAATCGATTGCCTCTGTTGCCAGTGTAACAAAC                                                                                                                                                       >  1:100134/1‑149  AGGAGCGCGCCAAAGCTTTGTTTACGATCCAGGCGTGGCATCTCGCCTATCCTCCAGGTACTTCGCTGTGACCAATTTTAGGCAGCCTTGCATTGCACTTCGGTTGCCCACGGCATAATCGATTGCCTCTGTTGCCAGTGTAACAAACT                                                                                                                                                      <  5:123829/149‑1                               CAGGCGTGGCATCTCGCCTATCCTCCAGGTACTTCGCTGTGACCAATTTTAGGCAGCCTTGCATTGCACTTCGGTTGCCCACGGCATAATCGATTGCCTCTGTTGCCAGTTTGTTACACTGGCAACAGAGGCAATCGATTATGCCGTG                                                                                                                          <  1:198067/148‑1                                                                                   GCAGCCTTGCATTGCACTTCGGTTGCCCACGGCATAATCGATTGCCTCTGTTGCCAGTTTGTTACACTGGCAACAGAGGCAATag                                                                                                                                     >  2:21117/1‑83                                                                                   GCAGCCTTGCATTGCACTTCGGTTGCCCACGGCATAATCGATTGCCTCTGTTGCCAGTTTGTTACACTGGCAACAGAGGCAATCG                                                                                                                                     <  1:21117/85‑1                                                                                                                                                     CTGGCAACAGAGGCAATCGATTATGCCGTGGGCAACCGAAGTGCAATGCAAGGCTGCCTAAAATTGGTCACAGCGAAGTACCTGGAGGATAGGCGAGATGCCACGCCTGGATCGTAAACAAAGCTTTGGCGCGCTCCTGGAGACTGTCA   <  3:60612/149‑1                                                                                                                                                     CTGGCAACAGAGGCAATCGATTATGCCGTGGGCAACCGAAGTGCAATGCAAGGCTGCCTAAAATTGGTCACAGCGAAGTACCTGGAGGATAGGCGAGATGCCACGCCTGGATCGTAAACAAAGCTTTGGCGCGCTCCTGGAGACTGTCA   >  8:207448/1‑149                                                                                                                                                        GCAACAGAGGCAATCGATTATGCCGTGGGCAACCGAAGTGCAATGCAAGGCTGCCTAAAATTGGTCACAGCGAAGTACCTGGAGGATAGGCGAGATGCCACGCCTGGATCGTAAACAAAGCTTTGGCGCGCTCCTGGAGACTGTCAC  <  2:318848/147‑1                                                                                                                                                                                                                                                                                                            CAGGAGCGCGCCAAAGCTTTGTTTACGATCCAGGCGTGGCATCTCGCCTATCCTCCAGGTACTTCGCTGTGACCAATTTTAGGCAGCCTTGCATTGCACTTCGGTTGCCCACGGCATAATCGATTGCCTCTGTTGCCAGTGTAACAAACTGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/3382033‑3381881 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑actggcAACAGAGGCAATCGATTATGCCGTGGGCAACCGAAGTGCAATGCAAGGCTGCCTAAAATTGGTCACAGCGAAGTACCTGGAGGATAGGCGAGATGCCACGCCTGGATCGTAAACAAAGCTTTGGCGCGCTCCTGGAGACTGTCAC  >  NC_002947/3381900‑3382044

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.