New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	3381881 =	38 (0.740)	3 (0.060)	3/248	NT	8.5%	coding (527/657 nt)	PP_2983	hypothetical protein
	?	NC_002947	3381900 =	28 (0.570)					coding (546/657 nt)	PP_2983	hypothetical protein

GGGTGAGCAGCCGCTGCACATCTTCGTTGCCGCCGGCGTGGATCTAGCAATATCCAAACTCGGCCGCTTTACGGAAAACGATCAATCTGATATCGAACAGCTCATCGAGTGCGGCCGTGTCGATGTCGGCCAGTTTGTTACACTGGCAACAGAGGCAATCGATTATGCCGTGGGCAACCGAAGTGCAATGCAAGGCTGCCTAAAATTGGTCACAGCGAAGTACCTGGAGGATAGGCGAGATGCCACGCCTGGATCGTAAACAAAGCTTTGGCGCGCTCCTGGAGACTGTCAC  >  NC_002947/3381753‑3382044                                                                                                                                                    |                                                                                                                                                 gtgTGAGCAGCCGCTGCACATCTTCGTTGCCGCCGGCGTGGATATAGCAATATCCAAAATCGGCCGCTTTACGGAAAACGATCAATCTGATATCGAACAAATCATCCAGTGCGGCCATGACGATGTCGCACACTTTGATACACAGTCaa                                                                                                                                                 >  3:296061/3‑149 (MQ=255)   gTGAGCAGCCGCTGCACATCTTCGTTGCCGCCGGCGTGGATCTAACAATATCCAAACTCGGCCGCTTTACGGAAAACGATCAATCTGATATCGAACAGCTCATCGAGTGCGGCCGTGTCGATGTCGGCCAGTTTGTTACACTGGCAACa                                                                                                                                               <  6:9776/149‑1 (MQ=255)                     tCTTCGTTGCCGCCGGCGTGGATCTAGCAATATCCAAACTCGGCCGCTTTACGGAAAACGATCAATCTGATATCGAACAGCTCATCGAGTGCGGCCGTGTCGATGTCGGCCAGTTTGTTACACTGGCAACAGAGGCAATCGATTATGcc                                                                                                                             >  2:25879/1‑149 (MQ=255)                       ttCGTTGCCGCCGGCGTGGATCTAGCAATATCCAAACTCGGCCGCTTTACGGAAAACGATCAATCTGATATCGAACAGCTCATCGAGTGCGGCCGTGTCGATGTCGGCCAGTTTGTTACACTGGCAACAGAGGCAATCGATTATGCCGt                                                                                                                           >  3:131590/1‑149 (MQ=255)                         caggcgtggcatctcgcctatcctccaggtacttcgctgtgaccaattttaggcagccttgcattgcacttcggttgcccacggcataatcgattgcctctgttgccagtttgttacactggcAACAGAGGCAATCGATTATGCCGTg                                                                                                                          <  1:198067‑M2/25‑1 (MQ=255)                         cGTTGCCGCCGGCGTGGATCTAGCAATATCCAAACTCGGCCGCTTTACGGAAAACGATCAATCTGATATCGAACAGCTCATCGAGTGCGGCCGTGTCGATGTCGGCCAGTTTGTTACACTGGCAACAGAGGCAATCGATTATGCCGt                                                                                                                           <  7:131827/147‑1 (MQ=255)                              ccgccgGCGTGGATCTAGCAATATCCAAACTCGGCCGCTTTACGGAAAACGATCAATCTGATATCGAACAGCTCATCGAGTGCGGCCGTGTCGATGTCGGCCAGTTTGTTACACTGGCAACAGAGGCAATCGATTATGCCGTGGGCaa                                                                                                                     <  5:269511/148‑1 (MQ=255)                                         gATCTAGCAATATCCAAACTCGGCCGCTTTACGGAAAACGATCAATCTGATATCGAACAGCTCATCGAGTGCGGCCGTGTCGATGTCGGCCAGTTTGTTACACTGGCAACAGAGGCAATCGATTATGCCGTGGGCAACCGAAGtgcaa                                                                                                          <  1:25879/148‑1 (MQ=255)                                             tAGCAATATCCAAACTCGGCCGCTTTACGGAAAACGATCAATCTGATATCGAACAGCTCATCGAGTGCGGCCGTGTCGATGTCGGCCAGTTTGTTACACTGGCAACAGAGGCAATCGATTATGCCGTGGGCAACCGAAGtgcaatgc                                                                                                       >  2:100134/1‑147 (MQ=255)                                             tAGCAATATCCAAACTCGGCCGCTTTACGGAAAACGATCAATCTGATATCGAACAGCTCATCGAGTGCGGCCGTGTCGATGTCGGCCAGTTTGTTACACTGGCAACAGAGGCAATCGATTATGCCGTGGGCAACCGAAGtgcaatgc                                                                                                       >  2:307468/1‑147 (MQ=255)                                              aGCAATATCCAAACTCGGCCGCTTTACGGAAAACGATCAATCTGATATCGAACAGCTCATCGAGTGCGGCCGTGTCGATGTCGGCCAGTTTGTTACACTGGCAACAGAGGCAATCGATTATGCCGTGGGCAACCGAAGTGCAATGCAAg                                                                                                    >  3:306888/1‑149 (MQ=255)                                               gCAATATCCAAACTCGGCCGCTTTACGGAAAACGATCAATCTGATATCGAACAGCTCATCGAGTGCGGCCGTGTCGATGTCGGCCAGTTTGTTACACTGGCAACag                                                                                                                                              >  6:239357/1‑106 (MQ=255)                                               gCAATATCCAAACTCGGCCGCTTTACGGAAAACGATCAATCTGATATCGAACAGCTCATCGAGTGCGGCCGTGTCGATGTCGGCCAGTTTGTTACACTGGCAACag                                                                                                                                              <  5:239357/106‑1 (MQ=255)                                               gCAATATCCAAACTCGGCCGCTTTACGGAAAACGATCAATCTGATATCGAACAGCTCATCGAGTGCGGCCGTGTCGATGTCGGCCAGTTTGTTACACTGGCAACAGAGGCAATCGATTATGCCGTGGGCAACCGAAGtgcaatgcaa                                                                                                     <  4:131590/147‑1 (MQ=255)                                                        aaaCTCGGCCGCTTTACGGAAAACGATCAATCTGATATCGAACAGCTCATCGAGTGCGGCCGTGTCGATGTCGGCCAGTTTGTTACACTGGCAACAGAGGCAATCGATTATGCCGTGGGCAACCGAAGTGCAATGCAAGGCTGCCTaa                                                                                           >  2:225806/1‑148 (MQ=255)                                                               gCCGCTTTACGGAAAACGATCAATCTGATATCGAACAGCTCATCGAGTGCGGCCGTGTCGATGTCGGCCAGTTTGTTACACTGGCAACAGAGGCAATCGATTATGCCGTGGGCAACCGAAGTGCAATGCAAGGCTGCCTAAAATTGGt                                                                                    >  3:170837/1‑148 (MQ=255)                                                                        cGGAAAACGATCAATCTGATATCGAACAGCTCATCGAGTGCGGCCGTGTCGATGTCGGCCAGTTTGTTACACTGGCAACAGAGGCAATCGATTATGCCGTGGGCAACCGAAGTGCAATGCAAGGCTGCCTAAAATTGGTCACAGCGaa                                                                           <  5:121213/148‑1 (MQ=255)                                                                           aaaaCGATCAATCTGATATCGAACAGCTCATCGAGTGCGGCCGTGTCGATGTCGGCCAGTTTGTTACACTGGCAACAGAGGCAATCGATTATGCCGTGGGCAACCGAAGTGCAATGCAAGGCTGCCTAAAATTGGTCACAGCGAAGTa                                                                        >  4:60612/1‑148 (MQ=255)                                                                             gcagccttgcattgcacttcggttgcccacggcataatcgattgcctctgttgccagtttgttacactggcAACAGAGGCaatag                                                                                                                                     >  2:21117‑M2/72‑83 (MQ=255)                                                                             gcagccttgcattgcacttcggttgcccacggcataatcgattgcctctgttgccagtttgttacactggcAACAGAGGCAATCg                                                                                                                                     <  1:21117‑M2/14‑1 (MQ=255)                                                                                 aTCAATCTGATATCGAACAGCTCATCGAGTGCGGCCGTGTCGATGTCGGCCAGTTTGTTACACTGGCAACAGAGGCAATCGATTATGCCGTGGGCAACCGAAGTGCAATGCAAGGCTGCCTAAAATTGGTCACAGCGAAGTACCTggag                                                                 >  4:260275/1‑149 (MQ=255)                                                                                    aaTCTGATATCGAACAGCTCATCGAGTGCGGCCGTGTCGATGTCGGCCAGTTTGTTACACTGGCAACaga                                                                                                                                             <  4:91392/70‑1 (MQ=255)                                                                                    aaTCTGATATCGAACAGCTCATCGAGTGCGGCCGTGTCGATGTCGGCCAGTTTGTTACACTGGCAACaga                                                                                                                                             >  3:91392/1‑70 (MQ=255)                                                                                          atatCGAACAGCTCATCGAGTGCGGCCGTGTCGATGTCGGCCAGTTTGTTACACTGGCAACAGAGGCAATCGATTATGCCGTGGGCAACCGAAGTGCAATGCAAGGCTGCCTAAAATTGGTCACAGCGAAGTACCTGGAGGATAGGCga                                                        <  4:306888/149‑1 (MQ=255)                                                                                             tCGAACAGCTCATCGAGTGCGGCCGTGTCGATGTCGGCCAGTTTGTTACACTGGCAACAGAGGCAATCGATTATGCCGTGGGCAACCGAAGTGCAATGCAAGGCTGCCTAAAATTGGTCACAGCGAAGTACCTGGAGGATAGGCGAGAt                                                     >  8:91762/1‑149 (MQ=255)                                                                                             tCGAACAGCTCATCGAGTGCGGCCGTGTCGATGTCGGCCAGTTTGTTACACTGGCAACAGAGGCAATCGATTATGCCGTGGGCAACCGAAGTGCAATGCAAGGCTGCCTAAAATTGGTCACAGCGAAGTACCTGGAGGATAGGCGAGAt                                                     <  1:307468/149‑1 (MQ=255)                                                                                                     cTCATCGAGTGCGGCCGTGTCGATGTCGGCCAGTTTGTTACACTGGCAACAGAGGCAATCGATTATGCCGTGGGCAACCGAAGTGCAATGCAAGGCTGCCTAAAATTGGTCACAGCGAAGTACCTGGAGGATAGGCGAGATGCCACGcc                                             >  8:222826/1‑149 (MQ=255)                                                                                                       cATCGAGTGCGGCCGTGTCGATGTCGGCCATTTTGTTACACTGGCAACAGAGGCAATCGATTATGCCGTGGGCAACCGAAGTGCAATGCAAGGCTGCCTAAAATTGGTCACAGCGAAGTACCTGGAGGATAGGCGAGATGCCACGCCTg                                           >  4:168565/1‑149 (MQ=255)                                                                                                       cATCGAGTGCGGCCGTGTCGATGTCGGCCAGTTTGTTACACTGGCAACAGAGGCAATCGATTATGCCGTGGGCAACCGAAGTGCAATGCAAGGCTGCCTAAAATTGGTCACAGCGAAGTACCTGGAGGATAGGCgaga                                                      <  3:280083/138‑1 (MQ=255)                                                                                                       cATCGAGTGCGGCCGTGTCGATGTCGGCCAGTTTGTTACACTGGCAACAGAGGCAATCGATTATGCCGTGGGCAACCGAAGTGCAATGCAAGGCTGCCTAAAATTGGTCACAGCGAAGTACCTGGAGGATAGGCgaga                                                      >  4:280083/1‑138 (MQ=255)                                                                                                       cATCGAGTGCGGCCGTGTCGATGTCGGCCAGTTTGTTACACTGGCAACAGAGGCAATCGATTATGCCGTGGGCAACCGAAGTGCAATGCAAGGCTGCCTAAAATTGGTCACAGCGAAGTACCTGGAGGATAGGCGAGATGCCACGCCTg                                           >  8:34550/1‑149 (MQ=255)                                                                                                        cacggcataatcgattgcctctgttGCCAGTGTAACAAACTGGCAACAGAGGCAATCGATTATGCCGTGGGCAACCGAAGTGCAATGCAAGGCTGCCTAAAATTGGTCACAGCGAAGTACCTGGAGGATAGGCGAGATGCCACGCCTg                                           <  1:198067‑M1/123‑1 (MQ=255)                                                                                                           gAGTGCGGCCGTGTCGATGTCGGCCAGTTTGTTACACTGGCAACAGAGGCAATCGATTATGCCGTGGGCAACCGAAGTGCAATGCAAGGCTGCCTAAAATTGGTCACAGCGAAGTACCTGGAGGATAGGCGAGATGCCACGCCTGGATc                                       <  7:91762/149‑1 (MQ=255)                                                                                                                  gCCGTGTCGATGTCGGCCAGTTTGTTACACTGGCAACAGAGGCAATCGATTATGCCGTGGGCAACCGAAGTGCAATGCAAGGCTGCCTAAAATTGGTCACAGCGAAGTACCTGGAGGATAGGCGAGATGCCACGCCTGGATCGTAAAc                                 >  6:34818/1‑148 (MQ=255)                                                                                                                   ctattgcctctgttGCCAGTGTAACAAACTGGCAACAGAGGCAATCGATTATGCCGTGGGCAACCGAAGTGCAATGCAAGGCTGc                                                                                               >  2:21117‑M1/15‑85 (MQ=255)                                                                                                                   cgattgcctctgttGCCAGTGTAACAAACTGGCAACAGAGGCAATCGATTATGCCGTGGGCAACCGAAGTGCAATGCAAGGCTGc                                                                                               <  1:21117‑M1/71‑1 (MQ=255)                                                                                                                    cGTGTCGATGTCGGCCATTTTGTTACACTGGCAACAGAGGCAATCGATTATGCCGTGGGCAACCGAAGTGCAATGCAAGGCTGCCTAAAATTGGTCACAGCGAAGTACCTGGAGGATAGGCGAGATGCCACGCCTGGATCGTAAACaaa                              <  3:168565/149‑1 (MQ=255)                                                                                                                                ggCCAGTTTGTTACACTGGCAACAGAGGCAATCGATTATGCCGTGGGCAACCGAAGTGCAATGCAAGGCTGCCTAAAATTGGTCACAGCGAAGTACCTGGAGGATAGGCGAGATGCCACGCCTGGATCGTAAACAAAGCTTTGgcgcgc                  >  1:318848/1‑149 (MQ=255)                                                                                                                                    AGTTTGTTACACTGGCAACAGAGGCAATCGATTATGCCGTGGGCAACCGAAGTGCAATGCAAGGCTGCCTAAAATTGGTCACAGCGAAGTACCTGGAGGATAGGCGAGATGCCACGCCTGGATCGTAAACAAAGCTTTGGCGCGCTCCt              <  5:123829‑M1/149‑1 (MQ=255)                                                                                                                                     GTTTGTTACACTGGCAACAGAGGCAATCGATTATGCCGTGGGCAACCGAAGTGCAATGCAAGGCTGCCTAAAATTGGTCACAGCGAAGTACCTGGAGGATAGGCGAGATGCCACGCCTGGATCGTAAACAAAGCTTTGGCGCGCTCCTg             >  1:100134‑M1/1‑149 (MQ=255)                                                                                                                                          ttACACTGGCAACAGAGGCAATCGATTATGCCGTGGGCAACCGAAGTGCAATGCAAGGCTGCCTAAAATTGGTCACAGCGAAGTACCTGGAGGATAGGCGAGATGCCACGCCTGGATCGTAAACAAAGCTTTGGCGCGCTCCTGgaga         <  1:225806/148‑1 (MQ=255)                                                                                                                                            acacTGGCAACAGAGGCAATCGATTATGCCGTGGGCAACCGAAGTGCAATGCAAGGCTGCCTAAAATTGGTCACAGCGAAGTACCTGGAGGATAGGCGAGATGCCACGCCTGGATCGTAAACAAAGCTTTGGCGCGCTCCTGGAGACt       <  3:260275/148‑1 (MQ=255)                                                                                                                                               ctggcAACAGAGGCAATCGATTATGCCGTGGGCAACCGAAGTGCAATGCAAGGCTGCCTAAAATTGGTCACAGCGAAGTACCTGGAGGATAGGCGAGATGCCACGCCTGGATCGTAAACAAAGCTTTGGCGCGCTCCTGGAGACTGTCa   >  8:207448‑M2/6‑149 (MQ=255)                                                                                                                                               ctggcAACAGAGGCAATCGATTATGCCGTGGGCAACCGAAGTGCAATGCAAGGCTGCCTAAAATTGGTCACAGCGAAGTACCTGGAGGATAGGCGAGATGCCACGCCTGGATCGTAAACAAAGCTTTGGCGCGCTCCTGGAGACTGTCa   <  3:60612‑M2/144‑1 (MQ=255)                                                                                                                                                  gcAACAGAGGCAATCGATTATGCCGTGGGCAACCGAAGTGCAATGCAAGGCTGCCTAAAATTGGTCACAGCGAAGTACCTGGAGGATAGGCGAGATGCCACGCCTGGATCGTAAACAAAGCTTTGGCGCGCTCCTGGAGACTGTCAc  <  2:318848‑M2/145‑1 (MQ=255)                                                                                                                                                    |                                                                                                                                                 GGGTGAGCAGCCGCTGCACATCTTCGTTGCCGCCGGCGTGGATCTAGCAATATCCAAACTCGGCCGCTTTACGGAAAACGATCAATCTGATATCGAACAGCTCATCGAGTGCGGCCGTGTCGATGTCGGCCAGTTTGTTACACTGGCAACAGAGGCAATCGATTATGCCGTGGGCAACCGAAGTGCAATGCAAGGCTGCCTAAAATTGGTCACAGCGAAGTACCTGGAGGATAGGCGAGATGCCACGCCTGGATCGTAAACAAAGCTTTGGCGCGCTCCTGGAGACTGTCAC  >  NC_002947/3381753‑3382044

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.