New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	3381881 =	38 (0.740)	3 (0.060)	3/248	NT	8.5%	coding (527/657 nt)	PP_2983	hypothetical protein
	?	NC_002947	3381900 =	28 (0.570)					coding (546/657 nt)	PP_2983	hypothetical protein

CCCATGGAGGGTTTCGAGGGTGAGCAGCCGCTGCACATCTTCGTTGCCGCCGGCGTGGATCTAGCAATATCCAAACTCGGCCGCTTTACGGAAAACGATCAATCTGATATCGAACAGCTCATCGAGTGCGGCCGTGTCGATGTCGGCCAGTTTGTTACACTGGCAACAGAGGCAATCGATTATGCCGTGGGCAACCGAAGTGCAATGCAAGGCTGCCTAAAATTGGTCACAGCGAAGTACCTGGAGGATAGGCGAGATGCCACGCCTGGATCGTAAACAAAGCTTTGGCGCGC  >  NC_002947/3381736‑3382028                                                                                                                                                  |                                                                                                                                                    gtgacagtctccaggagcgcgccaaagctttgtttacgatccaggcgtggcatctcgcctatcctccaggtacttcgctgtgaccaattttaggcagccttgcattgcacttcggttgcccacggcataatcgattgcctctgttGc                                                                                                                                                    <  2:318848‑M1/2‑1 (MQ=255)  tgacagtctccaggagcgcgccaaagctttgtttacgatccaggcgtggcatctcgcctatcctccaggtacttcgctgtgaccaattttaggcagccttgcattgcacttcggttgcccacggcataatcgattgcctctgttGCCAg                                                                                                                                                 >  8:207448‑M1/145‑149 (MQ=255)  tgacagtctccaggagcgcgccaaagctttgtttacgatccaggcgtggcatctcgcctatcctccaggtacttcgctgtgaccaattttaggcagccttgcattgcacttcggttgcccacggcataatcgattgcctctgttGCCAg                                                                                                                                                 <  3:60612‑M1/5‑1 (MQ=255)    aTGGAGGGTTTCGAGGGTGAGCAGCCGCTGCACATCTTCGTTGCCGCCGGCGTGGATCTAGCAATATCCAAACTCGGCCGCTTTACGGAAAACGATCAATCTGATATCGAACAGCTCATCGAGTGCGGCCGTGTCGATGTCGGCCAGtt                                                                                                                                               <  5:94385/149‑1 (MQ=255)     tGGAGGGTTTCGAGGGTGAGCAGCCGCTGCACATCTTCGTTGCCGCCGGCGTGGATCTAGCAATATCCAAACTCGGCCGCTTTACGGAAAACGATCAATCTGATATCGAACAGCTCATCGAGTGCGGCCGTGTCGATGTCGGCCAGttt                                                                                                                                              <  1:222276/149‑1 (MQ=255)               cGAGGGTGAGCAGCCGCTGCACATCTTCGTTGCCGCCGGCGTGGATCTAGCAATATCCAAACTCGGCCGCTTTACGGAAAACGATCAATCTGATATCGAACAGCTCATCGAGTGCGGCCGTGTCGATGGCGGCCAGTTTGTTACACTg                                                                                                                                     <  4:210856/148‑1 (MQ=255)                  gtgTGAGCAGCCGCTGCACATCTTCGTTGCCGCCGGCGTGGATATAGCAATATCCAAAATCGGCCGCTTTACGGAAAACGATCAATCTGATATCGAACAAATCATCCAGTGCGGCCATGACGATGTCGCACACTTTGATACACAGTCaa                                                                                                                                 >  3:296061/3‑149 (MQ=255)                    gTGAGCAGCCGCTGCACATCTTCGTTGCCGCCGGCGTGGATCTAACAATATCCAAACTCGGCCGCTTTACGGAAAACGATCAATCTGATATCGAACAGCTCATCGAGTGCGGCCGTGTCGATGTCGGCCAGTTTGTTACACTGGCAACa                                                                                                                               <  6:9776/149‑1 (MQ=255)                               cTGCACATCTTCGTTGCCGCCGGCGTGGATCTAGCAATATCCAAACTCGGCCGCTTTACGGAAAACGATCAATCTGATATCGAACAGCTCATCGAGTGCGGCCGTGTCGATGTCGGCCAGTTTGTTa                                                                                                                                          >  1:283357/1‑127 (MQ=255)                               cTGCACATCTTCGTTGCCGCCGGCGTGGATCTAGCAATATCCAAACTCGGCCGCTTTACGGAAAACGATCAATCTGATATCGAACAGCTCATCGAGTGCGGCCGTGTCGATGTCGGCCAGTTTGTTa                                                                                                                                          <  2:283357/127‑1 (MQ=255)                                     aTCTTCGTTGCCGCCGGCGTGGATCTAGCAATATCCAAACTCGGCCGCTTTACGGAAAACGATCAATCTGATATCGAACAGTTCATCGAGTGCGGCCGTGTCGATGTCGGCCAGttt                                                                                                                                              >  1:310115/1‑117 (MQ=255)                                     aTCTTCGTTGCCGCCGGCGTGGATCTAGCAATATCCAAACTCGGCCGCTTTACGGAAAACGATCAATCTGATATCGAACAGTTCATCGAGTGCGGCCGTGTCGATGTCGGCCAGttt                                                                                                                                              <  2:310115/117‑1 (MQ=255)                                      tCTTCGTTGCCGCCGGCGTGGATCTAGCAATATCCAAACTCGGCCGCTTTACGGAAAACGATCAATCTGATATCGAACAGCTCATCGAGTGCGGCCGTGTCGATGTCGGCCAGTTTGTTACACTGGCAACAGAGGCAATCGATTATGcc                                                                                                             >  2:25879/1‑149 (MQ=255)                                        ttCGTTGCCGCCGGCGTGGATCTAGCAATATCCAAACTCGGCCGCTTTACGGAAAACGATCAATCTGATATCGAACAGCTCATCGAGTGCGGCCGTGTCGATGTCGGCCAGTTTGTTACACTGGCAACAGAGGCAATCGATTATGCCGt                                                                                                           >  3:131590/1‑149 (MQ=255)                                          cGTTGCCGCCGGCGTGGATCTAGCAATATCCAAACTCGGCCGCTTTACGGAAAACGATCAATCTGATATCGAACAGCTCATCGAGTGCGGCCGTGTCGATGTCGGCCAGTTTGTTACACTGGCAACAGAGGCAATCGATTATGCCGt                                                                                                           <  7:131827/147‑1 (MQ=255)                                               ccgccgGCGTGGATCTAGCAATATCCAAACTCGGCCGCTTTACGGAAAACGATCAATCTGATATCGAACAGCTCATCGAGTGCGGCCGTGTCGATGTCGGCCAGTTTGTTACACTGGCAACAGAGGCAATCGATTATGCCGTGGGCaa                                                                                                     <  5:269511/148‑1 (MQ=255)                                                          gATCTAGCAATATCCAAACTCGGCCGCTTTACGGAAAACGATCAATCTGATATCGAACAGCTCATCGAGTGCGGCCGTGTCGATGTCGGCCAGTTTGTTACACTGGCAACAGAGGCAATCGATTATGCCGTGGGCAACCGAAGtgcaa                                                                                          <  1:25879/148‑1 (MQ=255)                                                              tAGCAATATCCAAACTCGGCCGCTTTACGGAAAACGATCAATCTGATATCGAACAGCTCATCGAGTGCGGCCGTGTCGATGTCGGCCAGTTTGTTACACTGGCAACAGAGGCAATCGATTATGCCGTGGGCAACCGAAGtgcaatgc                                                                                       >  2:307468/1‑147 (MQ=255)                                                              tAGCAATATCCAAACTCGGCCGCTTTACGGAAAACGATCAATCTGATATCGAACAGCTCATCGAGTGCGGCCGTGTCGATGTCGGCCAGTTTGTTACACTGGCAACAGAGGCAATCGATTATGCCGTGGGCAACCGAAGtgcaatgc                                                                                       >  2:100134/1‑147 (MQ=255)                                                               aGCAATATCCAAACTCGGCCGCTTTACGGAAAACGATCAATCTGATATCGAACAGCTCATCGAGTGCGGCCGTGTCGATGTCGGCCAGTTTGTTACACTGGCAACAGAGGCAATCGATTATGCCGTGGGCAACCGAAGTGCAATGCAAg                                                                                    >  3:306888/1‑149 (MQ=255)                                                                gCAATATCCAAACTCGGCCGCTTTACGGAAAACGATCAATCTGATATCGAACAGCTCATCGAGTGCGGCCGTGTCGATGTCGGCCAGTTTGTTACACTGGCAACag                                                                                                                              >  6:239357/1‑106 (MQ=255)                                                                gCAATATCCAAACTCGGCCGCTTTACGGAAAACGATCAATCTGATATCGAACAGCTCATCGAGTGCGGCCGTGTCGATGTCGGCCAGTTTGTTACACTGGCAACag                                                                                                                              <  5:239357/106‑1 (MQ=255)                                                                gCAATATCCAAACTCGGCCGCTTTACGGAAAACGATCAATCTGATATCGAACAGCTCATCGAGTGCGGCCGTGTCGATGTCGGCCAGTTTGTTACACTGGCAACAGAGGCAATCGATTATGCCGTGGGCAACCGAAGtgcaatgcaa                                                                                     <  4:131590/147‑1 (MQ=255)                                                                         aaaCTCGGCCGCTTTACGGAAAACGATCAATCTGATATCGAACAGCTCATCGAGTGCGGCCGTGTCGATGTCGGCCAGTTTGTTACACTGGCAACAGAGGCAATCGATTATGCCGTGGGCAACCGAAGTGCAATGCAAGGCTGCCTaa                                                                           >  2:225806/1‑148 (MQ=255)                                                                                gCCGCTTTACGGAAAACGATCAATCTGATATCGAACAGCTCATCGAGTGCGGCCGTGTCGATGTCGGCCAGTTTGTTACACTGGCAACAGAGGCAATCGATTATGCCGTGGGCAACCGAAGTGCAATGCAAGGCTGCCTAAAATTGGt                                                                    >  3:170837/1‑148 (MQ=255)                                                                                         cGGAAAACGATCAATCTGATATCGAACAGCTCATCGAGTGCGGCCGTGTCGATGTCGGCCAGTTTGTTACACTGGCAACAGAGGCAATCGATTATGCCGTGGGCAACCGAAGTGCAATGCAAGGCTGCCTAAAATTGGTCACAGCGaa                                                           <  5:121213/148‑1 (MQ=255)                                                                                            aaaaCGATCAATCTGATATCGAACAGCTCATCGAGTGCGGCCGTGTCGATGTCGGCCAGTTTGTTACACTGGCAACAGAGGCAATCGATTATGCCGTGGGCAACCGAAGTGCAATGCAAGGCTGCCTAAAATTGGTCACAGCGAAGTa                                                        >  4:60612/1‑148 (MQ=255)                                                                                                  aTCAATCTGATATCGAACAGCTCATCGAGTGCGGCCGTGTCGATGTCGGCCAGTTTGTTACACTGGCAACAGAGGCAATCGATTATGCCGTGGGCAACCGAAGTGCAATGCAAGGCTGCCTAAAATTGGTCACAGCGAAGTACCTggag                                                 >  4:260275/1‑149 (MQ=255)                                                                                                     aaTCTGATATCGAACAGCTCATCGAGTGCGGCCGTGTCGATGTCGGCCAGTTTGTTACACTGGCAACaga                                                                                                                             <  4:91392/70‑1 (MQ=255)                                                                                                     aaTCTGATATCGAACAGCTCATCGAGTGCGGCCGTGTCGATGTCGGCCAGTTTGTTACACTGGCAACaga                                                                                                                             >  3:91392/1‑70 (MQ=255)                                                                                                           atatCGAACAGCTCATCGAGTGCGGCCGTGTCGATGTCGGCCAGTTTGTTACACTGGCAACAGAGGCAATCGATTATGCCGTGGGCAACCGAAGTGCAATGCAAGGCTGCCTAAAATTGGTCACAGCGAAGTACCTGGAGGATAGGCga                                        <  4:306888/149‑1 (MQ=255)                                                                                                              tCGAACAGCTCATCGAGTGCGGCCGTGTCGATGTCGGCCAGTTTGTTACACTGGCAACAGAGGCAATCGATTATGCCGTGGGCAACCGAAGTGCAATGCAAGGCTGCCTAAAATTGGTCACAGCGAAGTACCTGGAGGATAGGCGAGAt                                     >  8:91762/1‑149 (MQ=255)                                                                                                              tCGAACAGCTCATCGAGTGCGGCCGTGTCGATGTCGGCCAGTTTGTTACACTGGCAACAGAGGCAATCGATTATGCCGTGGGCAACCGAAGTGCAATGCAAGGCTGCCTAAAATTGGTCACAGCGAAGTACCTGGAGGATAGGCGAGAt                                     <  1:307468/149‑1 (MQ=255)                                                                                                                      cTCATCGAGTGCGGCCGTGTCGATGTCGGCCAGTTTGTTACACTGGCAACAGAGGCAATCGATTATGCCGTGGGCAACCGAAGTGCAATGCAAGGCTGCCTAAAATTGGTCACAGCGAAGTACCTGGAGGATAGGCGAGATGCCACGcc                             >  8:222826/1‑149 (MQ=255)                                                                                                                        cATCGAGTGCGGCCGTGTCGATGTCGGCCATTTTGTTACACTGGCAACAGAGGCAATCGATTATGCCGTGGGCAACCGAAGTGCAATGCAAGGCTGCCTAAAATTGGTCACAGCGAAGTACCTGGAGGATAGGCGAGATGCCACGCCTg                           >  4:168565/1‑149 (MQ=255)                                                                                                                        cATCGAGTGCGGCCGTGTCGATGTCGGCCAGTTTGTTACACTGGCAACAGAGGCAATCGATTATGCCGTGGGCAACCGAAGTGCAATGCAAGGCTGCCTAAAATTGGTCACAGCGAAGTACCTGGAGGATAGGCgaga                                      >  4:280083/1‑138 (MQ=255)                                                                                                                        cATCGAGTGCGGCCGTGTCGATGTCGGCCAGTTTGTTACACTGGCAACAGAGGCAATCGATTATGCCGTGGGCAACCGAAGTGCAATGCAAGGCTGCCTAAAATTGGTCACAGCGAAGTACCTGGAGGATAGGCgaga                                      <  3:280083/138‑1 (MQ=255)                                                                                                                        cATCGAGTGCGGCCGTGTCGATGTCGGCCAGTTTGTTACACTGGCAACAGAGGCAATCGATTATGCCGTGGGCAACCGAAGTGCAATGCAAGGCTGCCTAAAATTGGTCACAGCGAAGTACCTGGAGGATAGGCGAGATGCCACGCCTg                           >  8:34550/1‑149 (MQ=255)                                                                                                                         cacggcataatcgattgcctctgttGCCAGTGTAACAAACTGGCAACAGAGGCAATCGATTATGCCGTGGGCAACCGAAGTGCAATGCAAGGCTGCCTAAAATTGGTCACAGCGAAGTACCTGGAGGATAGGCGAGATGCCACGCCTg                           <  1:198067‑M1/123‑1 (MQ=255)                                                                                                                            gAGTGCGGCCGTGTCGATGTCGGCCAGTTTGTTACACTGGCAACAGAGGCAATCGATTATGCCGTGGGCAACCGAAGTGCAATGCAAGGCTGCCTAAAATTGGTCACAGCGAAGTACCTGGAGGATAGGCGAGATGCCACGCCTGGATc                       <  7:91762/149‑1 (MQ=255)                                                                                                                                   gCCGTGTCGATGTCGGCCAGTTTGTTACACTGGCAACAGAGGCAATCGATTATGCCGTGGGCAACCGAAGTGCAATGCAAGGCTGCCTAAAATTGGTCACAGCGAAGTACCTGGAGGATAGGCGAGATGCCACGCCTGGATCGTAAAc                 >  6:34818/1‑148 (MQ=255)                                                                                                                                    ctattgcctctgttGCCAGTGTAACAAACTGGCAACAGAGGCAATCGATTATGCCGTGGGCAACCGAAGTGCAATGCAAGGCTGc                                                                               >  2:21117‑M1/15‑85 (MQ=255)                                                                                                                                    cgattgcctctgttGCCAGTGTAACAAACTGGCAACAGAGGCAATCGATTATGCCGTGGGCAACCGAAGTGCAATGCAAGGCTGc                                                                               <  1:21117‑M1/71‑1 (MQ=255)                                                                                                                                     cGTGTCGATGTCGGCCATTTTGTTACACTGGCAACAGAGGCAATCGATTATGCCGTGGGCAACCGAAGTGCAATGCAAGGCTGCCTAAAATTGGTCACAGCGAAGTACCTGGAGGATAGGCGAGATGCCACGCCTGGATCGTAAACaaa              <  3:168565/149‑1 (MQ=255)                                                                                                                                                 ggCCAGTTTGTTACACTGGCAACAGAGGCAATCGATTATGCCGTGGGCAACCGAAGTGCAATGCAAGGCTGCCTAAAATTGGTCACAGCGAAGTACCTGGAGGATAGGCGAGATGCCACGCCTGGATCGTAAACAAAGCTTTGgcgcgc  >  1:318848/1‑149 (MQ=255)                                                                                                                                                  |                                                                                                                                                    CCCATGGAGGGTTTCGAGGGTGAGCAGCCGCTGCACATCTTCGTTGCCGCCGGCGTGGATCTAGCAATATCCAAACTCGGCCGCTTTACGGAAAACGATCAATCTGATATCGAACAGCTCATCGAGTGCGGCCGTGTCGATGTCGGCCAGTTTGTTACACTGGCAACAGAGGCAATCGATTATGCCGTGGGCAACCGAAGTGCAATGCAAGGCTGCCTAAAATTGGTCACAGCGAAGTACCTGGAGGATAGGCGAGATGCCACGCCTGGATCGTAAACAAAGCTTTGGCGCGC  >  NC_002947/3381736‑3382028

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.