New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 3457526	27 (0.520)	3 (0.060)	3/248	NT	8.1%	coding (1165/1392 nt)	bhbP	D‑beta‑hydroxybutyrate permease
	?	NC_002947	= 3457565	42 (0.850)					coding (1126/1392 nt)	bhbP	D‑beta‑hydroxybutyrate permease

CTTGTAGGCCTCGCGGTGGGTGAGGCCGGTCACCGCCAGCAAGGTGATCACCGCGCCATTGTGCGGCAGGGTGTCCATGCCACCGCTGGCCATGGCGGCTACCCGGTGTAGCACTTCCAGCGGGATATCGGCCGCGTGGGCGGCGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/3457380‑3457526 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggcggcATGAGCATCGCCTTGGCAGCCATGGGCGACACGTTCATCGCCGCCGCCCACGCGGCCGATATCCCGCTGGAAGTGCTACACCGGGTAGCCGCCATGGC  <  NC_002947/3457565‑3457468                                                                                                                                                                                                                                                       CTTGTAGGCCTCGCGGTGGGTGAGGCCGGTCACCGCCAGCAAGGTGATCACCGCGCGATTGTGCGGCAGGGTGTCCATGCCACCGCTGGCCATGGCGGCTACCCGGTGTAGCACTTCCAGCGGGATATCGGCCGCGTGGGCGGCGGCAT                                                                                                  >  6:141987/1‑149                                         AAGGTGATCACCGCGCCATTGTGCGGCAGGGTGTCCATGCCACCGCTGGCCATGGCGGCTACCCGGTGTAGCACTTCCAGCGGGATATCGGCCGCGTGGGCGGCGGCATGAGCATCGCCTTGGCAGCCATGGGCGACACGTTCATCGCC                                                          >  1:43321/1‑149                                               ATCACCGCGCCATTGTGCGGCAGGGTGTCCATGCCACCGCTGGCCATGGCGGCTACCCGGTGTAGCACTTCCAGCGGGATATCGGCCGCGTGGGCGGCGGCATGAGCATCGCCTTGGCAGCCATGGGCGACACGTTCATCGCCGCCGCC                                                    <  5:141987/149‑1                                               ATCACCGCGCCATTGTGCGGCAGGGTGTCCATGCCACCGCTGGCCATGGCGGCTACCCGGTGTAGCACTTCCAGCGGGATATCGGCCGCGTGGGCGGCGGCATGAGCATCGCCTTGGCAGCCATGGGCGACACGTTCATCGCCGCCGC                                                     <  2:43321/148‑1                                                                                                                                                   CATGAGCATCGCCTTGGCAGCCATGGGCGACACGTTCATCGCCGCCGCCCACGCGGCCGATATCCCGCTGGAAGTGCTACACCGGGTAGCCGCCATGGC  <  5:140671/99‑1                                                                                                                                                   CATGAGCATCGCCTTGGCAGCCATGGGCGACACGTTCATCGCCGCCGCCCACGCGGCCGATATCCCGCTGGAAGTGCTACACCGGGTAGCCGCCATGGC  >  6:140671/1‑99                                                                                                                                                                                                                                                       CTTGTAGGCCTCGCGGTGGGTGAGGCCGGTCACCGCCAGCAAGGTGATCACCGCGCCATTGTGCGGCAGGGTGTCCATGCCACCGCTGGCCATGGCGGCTACCCGGTGTAGCACTTCCAGCGGGATATCGGCCGCGTGGGCGGCGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/3457380‑3457526 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggcggcATGAGCATCGCCTTGGCAGCCATGGGCGACACGTTCATCGCCGCCGCCCACGCGGCCGATATCCCGCTGGAAGTGCTACACCGGGTAGCCGCCATGGC  <  NC_002947/3457565‑3457468

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.