New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 3457526	27 (0.520)	3 (0.060)	3/248	NT	8.1%	coding (1165/1392 nt)	bhbP	D‑beta‑hydroxybutyrate permease
	?	NC_002947	= 3457565	42 (0.850)					coding (1126/1392 nt)	bhbP	D‑beta‑hydroxybutyrate permease

CCGCGCCATTGTGCGGCAGGGTGTCCATGCCACCGCTGGCCATGGCGGCTACCCGGTGTAGCACTTCCAGCGGGATATCGGCCGCGTGGGCGGCGGCGATGAACGTGTCGCCCATGGCTGCCAAGGCGATGCTCATGCCGCCCGAAGCGGAGCCGGTGATGCCGGCCAGCAAGGTCACGGTGATGGCTTCGTTCACCAAGGGGTTGGGGATGCTGCGCAGGGCATCGGCCAGCACCAGAAAACCCGGCAGCGAGGCGATTACCGCGCCAAAGCCGTATTCCGA  >  NC_002947/3457430‑3457712                                                                                                                                        |                                                                                                                                                    ccGCGCCATTGTGCGGCAGGGTGTCCATGCCACCGCTGGCCATGGCGGCTACCCGGTGTAGCACTTCCAGCGGGATATCGGCCGCGTGGGCGGCGGCGATGAACGTGTCGCCCATGGCTGCCAAGGCGATGCTCATGCCGCCCGAAGCg                                                                                                                                        <  8:203964/149‑1 (MQ=255)            tgCGGCAGGGTGTCCATGCCACCGCTGGCCATGGCGGCTACCCGGTGTAGCACTTCCAGCGGGATATCGGCCGCGTGGGCGGCGGCGATGAACGTGTCGCCCATGGCTGCCAAGGCGATGCTCATGCCGCCCGAAGCGGAGCCGGTGAt                                                                                                                             <  6:69105/149‑1 (MQ=255)             gCGGCAGGGTGTCCATGCCACCGCTGGCCATGGCGGCTACCCGGTGTAGCACTTCCAGCGGGATATCGGCCGCGTGGGCGGCGGCGATGAACGTGTCGCCCATGGCTGCCAAGGCGATGCTCATGCCGCCCGAAGCGGAGCCGGTGATg                                                                                                                            >  3:20919/1‑149 (MQ=255)                          cATGCCACCGCTGGCCATGGCGGCTACCCGGTGTAGCACTTCCAGCGGGATATCGGCCGCGTGGGCGGCGGCGATGAACGTGTCGCCCATGGCTGCCAAGGCGATGCTCATGCCGCCCGAAGCGGAGCCGGTGATGCCGGCCAGCAAgg                                                                                                               >  3:121064/1‑149 (MQ=255)                           aagCCACCGCTGGCCATGGCGGCTACCCGGTGTAGCACTTCCAGCGGGATATCGGCCGCGTGGGCGGCGGCGATGAACGTGTCGCCCATGGCTGCCAAGGCGATGCTCATGCCGccc                                                                                                                                              <  2:130178/115‑1 (MQ=255)                           aTGCCACCGCTGGCCATGGCGGCTACCCGGTGTAGCACTTCCAGCGGGATATCGGCCGCGTGGGCGGCGGCGATGAACGTGTCGCCCATGGCTGCCAAGGCGATGCTCATGCCGccc                                                                                                                                              >  1:130178/1‑117 (MQ=255)                                       gCCATGGCGGCTACCCGGTGTAGCACTTCCAGCGGGATATCGGCCGCGTGGGCGGCGGCGATGAACGTGTCGCCCATGGCTGCCAAGGCGATGCTCATg                                                                                                                                                    <  5:140671‑M2/99‑2 (MQ=255)                                       gCCATGGCGGCTACCCGGTGTAGCACTTCCAGCGGGATATCGGCCGCGTGGGCGGCGGCGATGAACGTGTCGCCCATGGCTGCCAAGGCGATGCTCATg                                                                                                                                                    >  6:140671‑M2/1‑98 (MQ=255)                                          aTGGCGGCTACCCGGTGTAGCACTTCCAGCGGGATATCGGCCGCGTGGGCGGCGGCGATGAACGTGTCGCCCATGGCTGCCAAGGCGATGCTCATGCCGCCCGAAGCGGAGCCGGTGATGCCGGCCAGCAAGGTCACGGTGATGGCTTc                                                                                               >  5:260064/1‑149 (MQ=255)                                               ggcTACCCGGTGTAGCACTTCCAGCGGGATATCGGCCGCGTGGGCGGCGGCGATGAACGTGTCGCCCATGGCTGCCAAGGCGATGCTCATGCCGCCCGAAGCGGAGCCGGTGATGCCGGCCAGCAAGGTCACGGTGATGGCTTCGTTCa                                                                                          <  4:235062/149‑1 (MQ=255)                                               ggcTACCCGGTGTAGCACTTCCAGCGGGATATCGGCCGCGTGGGCGGCGGCGATGAACGTGTCGCCCATGGCTGCCAAGGCGATGCTCATGCCGCCCGAAGCGGAGCCGGTGATGCCGGCCAGCAAGGTCACGGTGATGGCTTCGTTCa                                                                                          <  4:20919/149‑1 (MQ=255)                                                   aCCCGGTGTAGCACTTCCAGCGGGATATCGGCCGCGTGGGCGGCGGCGATGAACGTGTCGCCCATGGCTGCCAAGGCGATGCTCATGCCGCCCGAAGCGGAGCCGGTGATGCCGGCCAGCAAGGTCACGGTGATGGCTTCGTTCAcc                                                                                        >  2:322930/1‑147 (MQ=255)                                                    cccGGTGTAGCACTTCCAGCGGGATATCGGCCGCGTGGGCGGCGGCGATGAACGTGTCGCCCATGGCTGCCAAGGCGATGTTCATGCCGCCCGAAGCGGAGCCGGTGATGCCGGCCAGCAAGGTCACGGTGATGGCTTCGTTCACCAAg                                                                                     <  1:272427/149‑1 (MQ=255)                                                    cccGGTGTAGCACTTCCAGCGGGATATCGGCCGCGTGGGCGGCGGCGATGAACGTGTCGCCCATGGCTGCCAAGGCGATGCTCATGCCGCCCGAAGCGGAGCCGGTGATGCCGGCCAGCAAGGTCACGGTGATGGCTTCGTTCACCaa                                                                                      <  7:176065/148‑1 (MQ=255)                                                             gCACTTCCAGCGGGATATCGGCCGCGTGGGCGGCGGCGATGAACGTGTCGCCCATGGCTGCCAAGGCGGTGCTCATGCCGCCCGAAGCGGAGCCGGTGATGCCGGCCAGCAAGGTCACGGTGATGGCTTCGTTCACCAAGGGGTTggg                                                                             <  2:135612/148‑1 (MQ=255)                                                                      gCGGGATATCGGCCGCGTGGGCGGCGGCGATGAACGTGTCGCCCATGGCTGCCAAGGCGATGCTCATGCCGCCCGAAGCGGAGCCGGTGATGCCGGCCAGCAAGGTCACGGTGATGGc                                                                                                  >  4:98526/1‑118 (MQ=255)                                                                      gCGGGATATCGGCCGCGTGGGCGGCGGCGATGAACGTGTCGCCCATGGCTGCCAAGGCGATGCTCATGCCGCCCGAAGCGGAGCCGGTGATGCCGGCCAGCAAGGTCACGGTGATGGc                                                                                                  <  3:98526/118‑1 (MQ=255)                                                                         ggATATCGGCCGCGTGGGCGGCGGCGATGAACGTGTCGCCCATGGCTGCCAAGGCGATGCTCATGCCGCCCGAAGCGGAGCCGGTGATGCCGGCCAGCAAGGTCACGGTGATGGCTTCGTTCACCAAGGGGTTGGGGATGCTGCGCAgg                                                                <  4:307870/149‑1 (MQ=255)                                                                          gATATCGGCCGCGTGGGCGGCGGCGATGAACGTGTCGCCCATGGCTGCCAAGGCGATGCTCATGCCGCCCGAAGCGGAGCCGGTGATGCCGGCCAGCAAGGTCACGGTGATGGCTTCGTTCACCAAGGGGTTGGGGATGCTGCGCAggg                                                               <  3:238904/149‑1 (MQ=255)                                                                              tCGGCCGCGTGGGCGGCGGCGATGAACGTGTCGCCCATGGCTGCCAAGGCGATGCTCATGCCGCCCGAAGCGGAGCCGGTGATGCCGGCCAGCAAGGTCACGGTGATGGCTTCGTTCACCAAGGGGTTGGGGATGCTGCGCAGGGCATc                                                           >  1:312101/1‑149 (MQ=255)                                                                               cGGCCGCGTGGGCGGCGGCGATGAACGTGTCGCCCATGGCTGCCAAGGCGATGCTCATGCCGCCCGAAGCGGAGCCGGTGATGCCGGCCAGCAAGGTCACGGTGATGGCTTCGTTCACCAAGGGGTTGGGGATGCTGCGCAGGGCATCg                                                          >  3:159947/1‑149 (MQ=255)                                                                                 gCCGCGTGGGCGGCGGCGATGAACGTGTCGCCCATGGCTGCCAAGGCGATGCTCATGCCGCCCGAAGCGGAGCCGGTGATGCCGGCCAGCAAGGTCACg                                                                                                          >  6:289932/1‑99 (MQ=255)                                                                                 gCCGCGTGGGCGGCGGCGATGAACGTGTCGCCCATGGCTGCCAAGGCGATGCTCATGCCGCCCGAAGCGGAGCCGGTGATGCCGGCCAGCAAGGTCACg                                                                                                          <  5:289932/99‑1 (MQ=255)                                                                                 gCCGCGTGGGCGGCGGCGATGAACGTGTCGCCCATGGCTGCCAAGGCGATGCTCATGCCGCCCGAAGCGGAGCCGGTGATGCCGGCCAGCAAGGTCACGGTGATGGCTTCGTTCACCAAGGGGTTGGGGATGCTGCGCAGGGCATCGGc                                                        >  5:32996/1‑149 (MQ=255)                                                                                   cgcgTGGGCGGCGGCGATGAACGTGTCGCCCATGGCTGCCAAGGCGATGCTCATGCCGCCCGAAGCGGAGCCGGTGATGCCGGCCAGCAAGGTCACGGTGATGGCTTCGTTCACCAAGGGGTTGGGGATGCTGCGCAGGGCATCGGCCa                                                      <  4:121064/149‑1 (MQ=255)                                                                                         ggcggcggcGATGAACGTGTCGCCCATGGCTGCCAAGGCGATGCTCATgccgccgcccacgcggccgatatcccgctggaagtgctacaccgggtagccgccatggccagcggtggcatggacaccctgccgcacaatggcgcggtgat                                                <  5:141987‑M2/149‑102 (MQ=255)                                                                                          gcggcggcgATGAACGTGTCGCCCATGGCTGCCAAGGCGATGCTCATgccgccgcccacgcggccgatatcccgctggaagtgctacaccgggtagccgccatggccagcggtggcatggacaccctgccgcacaatggcgcggtgat                                                <  2:43321‑M2/148‑102 (MQ=255)                                                                                            ggcggcgATGAACGTGTCGCCCATGGCTGCCAAGGCGATGCTCATGCCGCCCGAAGCGGAGCCGGTGATGCCGGCCAGCAAGGTCACGGTGATGGCTTCGTTCACCAAGGGGTTGGGGATGCTGCGCAGGGCATCGGCCAGCACCAGaa                                             <  4:159947/149‑1 (MQ=255)                                                                                               ggcgATGAACGTGTCGCCCATGGCTGCCAAGGCGATGCTCATgccgccgcccacgcggccgatatcccgctggaagtgctacaccgggtagccgccatggccagcggtggcatggacaccctgccgcacaatggcgcggtgatcacctt                                          >  1:43321‑M2/1‑42 (MQ=255)                                                                                                gcgATGAACGTGTCGCCCATGGCTGCCAAGGCGATGCTCATGCCGCCCGAAGCGGAGCCGGTGATGCCGGCCAGCAAGGTCACGGTGATGGCTTCGTTCACCAAGGGGTTGGGGATGCTGCGCAGGGCATCGGCCAGCACCAGAAAAcc                                         >  6:248611/1‑149 (MQ=255)                                                                                                  gATGAACGTGTCGCCCATGGCTGCCAAGGCGATGCTCATGCCGCCCGAAGCGGAGCCGGTGATGCCGGCCAGCAAGGTCACGGTGATGGCTTCGTTCACCAAGGGGTTGGGGATGCTGCGCAGGGCATCGGCCAGCACCAGAAAACCCg                                       <  5:175557/149‑1 (MQ=255)                                                                                                  gATGAACGTGTCGCCCATGGCTGCCAAGGCGATGCTCATGCCGCCCGAAGCGGAGCCGGTGATGCCGGCCAGCAAGGTCACGGTGATGGCTTCGTTCACCAAGGGGTTGGGGATGCTGCGCAGGGCATCGGCCAGCACCAGAAAACCCg                                       <  5:248611/149‑1 (MQ=255)                                                                                                  gATGAACGTGTCGCCCATGGCTGCCAAGGCGATGCTCATGCCGCCCGAAGCGGAGCCGGTGATGCCGGCCAGCAAGGTCACGGTGATGGCTTCGTTCACCAAGGGGTTGGGGATGCTGCGCAGGGCATCGGCCAGCACCAGAAAACCCg                                       >  2:327568/1‑149 (MQ=255)                                                                                                  gATGAACGTGTCGCCCATGGCTGCCAAGGCGATGCTCATGCCGCCCGAAGCGGAGCCGGTGATGCCGGCCAGCAAGGTCACGGTGATGGCTTCGTTCACCAAGGGGTTGGGGATGCTGCGCAGGGCATCGGCCAGCACCAGAAAACCCg                                       >  6:175557/1‑149 (MQ=255)                                                                                                            tCGCCCATGGCTGCCAAGGCGATGCTCATGCCGCCCGAAGCGGAGCCGGTGATGCCGGCCAGCAAGGTCACGGTGATGGCTTCGTTCACCAAGGGGTTGGGGATGCTGCGCAGGGCATCGGCCAGCACCAGAAAACCCGGCAGCGAGGc                             <  2:312101/149‑1 (MQ=255)                                                                                                                ccATGGCTGCCATGGCGATGGTCATGCCGCCCGTATCGGAGCCGGTGATGCCGTCCAGCAAGGTCACGGTGATGGCTTCGTTCACCAAGTGGTTGGGGATGCTGCGCAGGGCATCg                                                          <  4:2347/116‑1 (MQ=255)                                                                                                                ccATGGCTGCCAAGGCGATGCTCATGCCGCCCGAAGCGGAGCCGGTGATGCCGGCCAGCAAGGTCACGGTGATGGCTTCGTTCACCAAGGGGTTCGGGATGCTGCGAAGGGCATCg                                                          >  3:2347/1‑116 (MQ=255)                                                                                                                ccATGGCTGCCAAGGCGATGATCATGCAGCCCGAAGCGGAGCCGGTGATGCCGGCCAGAAAGGTCACGGTGATGGCTTCGTTCACCAAGGGGTTGGGGATGCTGCGCAGGGCATCGGCCAGCAAAAGAAAAACCGTCAGCGAGGCGAt                          >  7:69531/1‑148 (MQ=255)                                                                                                                     gCTGCCAAGGCGATGCTCATGCCGCCCGAAGCGGAGCCGGTGATGCCGGCCAGCAAGGTCACGGTGATgg                                                                                                   <  7:277662/70‑1 (MQ=255)                                                                                                                     gCTGCCAAGGCGATGCTCATGCCGCCCGAAGCGGAGCCGGTGATGCCGGCCAGCAAGGTCACGGTGATgg                                                                                                   >  8:277662/1‑70 (MQ=255)                                                                                                                     gCTGCCAAGGCGATGCTCATGCCGCCCGAAGCGGAGCCGGTGATGCCGGCCAGCAAGGTCACGGTGATGGCTTCGTTCACCAAGGGGTTGGGGATGCTGCGCAGGGCATCGGCCAGCACCAGAAAACCCGGCAGCGAGGCGATTACcgc                    <  4:311689/149‑1 (MQ=255)                                                                                                                          cAAGGCGATGCTCATGCCGCCCGAAGCGGAGCCGGTGATGCCGGCCAGCAAGGTCACGGTGATGGCTTCGTTCACCAAGGGGTTGGGGATGCTGCGCAGGGCATCGGCCAGCACCAGAAAACCCGGCAGCGAGGCGATTACCGCGCCa                >  1:257139/1‑148 (MQ=255)                                                                                                                           aaGGCGATGCTCATGCCGCCCGAAGCGGAGCCGGTGATGCCGGCCAGCAAGGTCACGGTGATGGCTTCGTTCACCAAGGGGTTGGGGATGCTGCGCAGGGCATCGGcc                                                       <  6:256359/108‑1 (MQ=255)                                                                                                                           aaGGCGATGCTCATGCCGCCCGAAGCGGAGCCGGTGATGCCGGCCAGCAAGGTCACGGTGATGGCTTCGTTCACCAAGGGGTTGGGGATGCTGCGCAGGGCATCGGcc                                                       >  5:256359/1‑108 (MQ=255)                                                                                                                              gCGATGCTCATGCCGCCCGAAGCGGAGCCGGTGATGCCGGCCAGCAAGGTCACGGTGATGGCTTCGTTCACCAAGGGGTTGGGGATGCTGCGCAGGGCATCGGCCAGCACCAGAAAACCCGGCAGCGAGGCGATTACCGCGCCAAAGcc           <  6:32996/149‑1 (MQ=255)                                                                                                                              gCGATGCTCATGCCGCCCGAAGCGGAGCCGGTGATGCCGGCCAGCAAGGTCACGGTGATGGCTTCGTTCACCAAGGGGTTGGGGATGCTGCGCAGGGCATCGGCCAGCACCAGAAAACCCGGCAGCGAGGCGATTACCGCGCCAAAGcc           >  1:285988/1‑149 (MQ=255)                                                                                                                                gATGCTCATGCCGCCCGAAGCGGAGCCGGTGATGCCGGCCAGCAAGGTCACGGTGATGGCTTCGTTCACCAAGGGGTTGGGGATGCTGCGCAGGGCATCTGcc                                                       <  8:187664/103‑1 (MQ=255)                                                                                                                                gATGCTCATGCCGCCCGAAGCGGAGCCGGTGATGCCGGCCAGCAAGGTCACGGTGATGGCTTCGTTCACCAAGGGGTTGGGGATGCTGCGCAGGGCATCGGcc                                                       >  7:187664/1‑103 (MQ=255)                                                                                                                                  tGCTCATGCCGCCCGAAGCGGAGCCGGTGATGCCGGCCAGCAAGGTCACGGTGATGGCTTCGTTCACCAAGGGGTTGGGGATGCTGCGCAGGGCATCGGCCAGCACCAGAAAACCCGGCAGCGAGGCGATTACCGCGCCAAAGCCGTAt       <  1:322930/149‑1 (MQ=255)                                                                                                                                     tCATGCCGCCCGAAGCGGAGCCGGTGATGCCGGCCAGCAAGGTCACGGTGATGGCTTCGTTCACCAAGGGGTTGGGGATGCTGCGCAGGGCATCGGCCAGCACCAGAAAACCCGGCAGCGAGGCGATTACCGCGCCAAAg             >  6:167194/1‑140 (MQ=255)                                                                                                                                     tCATGCCGCCCGAAGCGGAGCCGGTGATGCCGGCCAGCAAGGTCACGGTGATGGCTTCGTTCACCAAGGGGTTGGGGATGCTGCGCAGGGCATCGGCCAGCACCAGAAAACCCGGCAGCGAGGCGATTACCGCGCCAAAg             <  5:167194/140‑1 (MQ=255)                                                                                                                                     tCATGCCGCCCGAAGCGGAGCCGGTGATGCCGGCCAGCAAGGTCACGGTGATGGCTTCGTTCACCAAGGGGTTGGGGATGCTGCGCAGGGCATCGGCCAGCACCAGAAAACCCGGCAGCGAGGCGATTACCGCGCCAAAGCCGTATTcc    >  6:283932/1‑149 (MQ=255)                                                                                                                                       aTgccgccgcccacgcggccgatatcccgctggaagtgctacaccgggtagccgccatggccagcggtggcatggacaccctgccgcacaatcgcgcggtgatcaccttgctggcggtgaccggcctcacccaccgcgaggcctacaag  >  6:141987‑M2/1‑2 (MQ=255)                                                                                                                                        |                                                                                                                                                    CCGCGCCATTGTGCGGCAGGGTGTCCATGCCACCGCTGGCCATGGCGGCTACCCGGTGTAGCACTTCCAGCGGGATATCGGCCGCGTGGGCGGCGGCGATGAACGTGTCGCCCATGGCTGCCAAGGCGATGCTCATGCCGCCCGAAGCGGAGCCGGTGATGCCGGCCAGCAAGGTCACGGTGATGGCTTCGTTCACCAAGGGGTTGGGGATGCTGCGCAGGGCATCGGCCAGCACCAGAAAACCCGGCAGCGAGGCGATTACCGCGCCAAAGCCGTATTCCGA  >  NC_002947/3457430‑3457712

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.