New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	3677188 =	48 (0.930)	3 (0.060)	3/246	NT	5.9%	coding (191/1569 nt)	PP_3242	GGDEF domain‑containing protein
	?	NC_002947	3677237 =	50 (1.020)					coding (240/1569 nt)	PP_3242	GGDEF domain‑containing protein

ATGCGTTTTTGCTGGGCCAGCAAGGCATGCAGGCGGGGCCGGTCGATGTGATCGAAACCATCGCCTTCCAGGCGCTCGGCCAAGGCACCGGTAATGGCGTCGACCTGGCGGATAGCGTCCTCGGCGTGCTGCGCCGTGGCCCGGGCCAGGT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/3677338‑3677188 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gccaggtCGACGCCATTACCGGTGCCTTGGCCGAGCGCCTGGAAGGCGATGGTTTCGATCACATCGACCGGCCCCGCCTGCATGCCTTGCTGGCCCAGCAAAAACGCATCATGCCGCAGTTGCACGGGCTTTTCGTTTACGGCCCGGACGGCAGC  >  NC_002947/3677237‑3677384                                                                                                                                                                                                                                                                                                             ATGCGTTTTTGCTGGGCCAGCAAGGCATGCAGGCGGGGCCGGTCGATGTGATCGAAACCATCGCCTTCCAGGCGCTCGGCCAAGGCACCGGTAATGGCGTCGACCTGGCGGATAGCGTCCTCGGCGTGCTGCGCCGTGGCCCGGGCCAG                                                                                                                                                        <  3:221522/149‑1  TGCGTTTTTGCTGGGCCAGCAAGGCATGCAGGCGGGGCCGGTCGATGTGATCGAAACCATCGCCTTCCAGGCGCTCGGCCAAGGCACCGGTAATGGCGTCGACCTGGCGGATAGCGTCCTCGGCGTGCTGCGCCGTGGCCCGGGCCAG                                                                                                                                                        <  7:217082/148‑1    CGTTTTTGCTGGGCCAGCAAGGCATGCAGGCGGGGCCGGTCGATGTGATCGAAACCATCGCCTTCCAGGCGCTCGGCCAAGGCACCGGTAATGGCGTCGACCTGGCGGATAGCGTCCTCGGCGTGCTGCGCCGTGGCCCGGGCCAGGT                                                                                                                                                      <  2:75906/148‑1                                                                                                   GTCGACCTGGCGGATAGCGTCCTCGGCGTGCTGCGCCGTGGCCCGGGCCAGGTCGACGCCATTACCGGTGCCTTGGCCGAGCGCCTGGAAGGCGATGGTTTCGATCACATCGACCGGCCCCGCCTGCATGCCTTGCTGGCCCAGCAAAA                                                      <  3:203780/149‑1                                                                                                   GTCGACCTGGCGGATAGCGTCCTCGGCGTGCTGCGCCGTGGCCCGGGCCAGGTCGACGCCATTACCGGTGCCTTGGCCGAGCGCCTGGAAGGCGATGGTTTCGATCACATCGACCGGCCCCGCCTGCATGCCTTGCTGGCCCAGCAAA                                                       >  4:203780/1‑148                                                                                                      GACCTGGCGGATAGCGTCCTCGGCGTGCTGCGCCGTGGCCCGGGCCAGGTCGACGCCATTACCGGTGCCTTGGCCGAGCGCCTGGAAGGCGATGGTTTCGATCACATCGACCGGCCCCGCCTGCATGCCTTGCTGGCCCAGCAAAAACG                                                   >  5:237109/1‑149                                                                                                                                                       TCGACGCCATTACCGGTGCCTTGGCCGAGCGCCTGGAAGGCGATGGTTTCGATCACATCGACCGGCCCCGCCTGCATGCCTTGCTGGCCCAGCAAAAACGCATCATGCCGCAGTTGCACGGGCTTTTCGTTTACGGCCCGGACGGCAGC  <  4:238354/149‑1                                                                                                                                                                                                                                                                                                             ATGCGTTTTTGCTGGGCCAGCAAGGCATGCAGGCGGGGCCGGTCGATGTGATCGAAACCATCGCCTTCCAGGCGCTCGGCCAAGGCACCGGTAATGGCGTCGACCTGGCGGATAGCGTCCTCGGCGTGCTGCGCCGTGGCCCGGGCCAGGT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/3677338‑3677188 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gccaggtCGACGCCATTACCGGTGCCTTGGCCGAGCGCCTGGAAGGCGATGGTTTCGATCACATCGACCGGCCCCGCCTGCATGCCTTGCTGGCCCAGCAAAAACGCATCATGCCGCAGTTGCACGGGCTTTTCGTTTACGGCCCGGACGGCAGC  >  NC_002947/3677237‑3677384

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.