New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	3677188 =	48 (0.930)	3 (0.060)	3/246	NT	5.9%	coding (191/1569 nt)	PP_3242	GGDEF domain‑containing protein
	?	NC_002947	3677237 =	50 (1.020)					coding (240/1569 nt)	PP_3242	GGDEF domain‑containing protein

ATCAGTGGCGAGGGCCGCGCCGTGGCGCTGTTCCGCCTGGTACTGGCATTCATGCTGGTGGTGATGCTGGCATTTGTACTGGTGGAAGGTTGGCGCATCTGGCGCGACTACCGCTTTGCCTATAACAATGCCGAGAACATGGTCAGCAACCTGGCCCGGGCCACGGCGCAGCACGCCGAGGACGCTATCCGCCAGGTCGACGCCATTACCGGTGCCTTGGCCGAGCGCCTGGAAGGCGATGGTTTCGATCACATCGACCGGCCCCGCCTGCATGCCTTGCTGGCCCAGCAAAAACG  >  NC_002947/3677040‑3677335                                                                                                                                                     |                                                                                                                                                    gctgccgtccgggccgtaaacgaaaagcccgtgcaactgcggcatgatgcgtttttgctgggccagcaaggcatgcaggcggggccggtcgatgtgatcgaaaccatcgccttccaggcgctcggccaaggcaccggtaatggcgtcga                                                                                                                                                     <  4:238354‑M1/1‑1 (MQ=255)  tCAGTGGCGAGGGCCGCGCCGTGGCGCTGTTCCGCCTGGTACTGGCATTCATGCTGGTGGTGATGCTGGCATTTGTACTGGTGGAAGGTTGGCGCATCTGGCGCGACTACCGCTTTGCCTATAACAATGCCGAGAACATGGTCAGCAAc                                                                                                                                                    >  5:80155/1‑149 (MQ=255)    aGTGGCGAGGGCCGCGCCGTGGCGCTGTTCCGCCTGGTACTGGCATTCATGCTGGTGGTGATGCTGGCATTTGTACTGGTGGAAGGTTGGCGCATCTGGCGCGACTACCGCTTTGCCTATAACAATGCCGAGAACATGGTCAGCAACCt                                                                                                                                                  <  8:183584/149‑1 (MQ=255)        gCGAGGGCCGCGCCGTGGCGCTGTTCCGCCTGGTACTGGCATTCATGCTGGTGGTGATGCTGGCATTTGTACTGGTGGAAGGTTGGCGCATCTGGCGCGACTACCGCTTTGCCTATAACAATGCCGAGAACATGGTCAGCAACCTGGcc                                                                                                                                              >  1:271948/1‑149 (MQ=255)          gAGGGCCGCGCCGTGGCGCTGTTCCGCCTGGTACTGGCATTCATGCTGGTGGTGATGCTGGCATTTGTACTGGTGGAAGGTTGGCGCATCTGGCGCGACTACCGCTTTGCCTATAACAATGCCGAGAACATGGTCAGCAACCTGGCCCg                                                                                                                                            >  5:9181/1‑149 (MQ=255)             ggCCGCGCCGTGGCGCTGTTCCGCCTGGTACTGGCATTCATGCTGGTGGTGATGCTGGCATTTGTACTGGTGGAAGGTTGGCGCATCTGGCGCGCCTACCGCTTTGCCTATAACAATGCCGAGAACATGGTCAGCAACCTGGCCCGGGc                                                                                                                                         >  4:173293/1‑149 (MQ=255)                   gcCGTGGCGCTGTTCCGCCTGGTACTGGCATTCATGCTGGTGGTGATGCTGGCATTTGTACTGGTGGAAGGTTGGCGCATCTGGCGCGACTACCGCTTTGCCTATAACAATGCCGAGAACATGGTCAGCAACCTGGCCCGGGCCACGgc                                                                                                                                   <  2:118241/149‑1 (MQ=255)                      gTGGCGCTGTTCCGCCTGGTACTGGCATTCATGCTGGTGGTGATGCTGGCATTTGTACTGGTGGAAGGTTGGCGCATCTGGCGCGACTACCGCTTTGCCTATAACAATGCCGAGAACATGGTCAGCAACCTGGCCCGGGCCACGGCgca                                                                                                                                <  5:206406/149‑1 (MQ=255)                         gcgcTGTTCCGCCTGGTACTGGCATTCATGCTGGTGGTGATGCTGGCATTTGTACTGGTGGAAGGTTGGCGCATCTGGCGCGACTACCGCTTTGCCTATAACAATGCCGAGAACATGGTCAGCAACCTGGCCCGGGCCACGGCgcagca                                                                                                                             <  4:280340/149‑1 (MQ=255)                               ttCCGCCTGGTACTGGCATTCATGCTGGTGGTGATGCTGGCATTTGTACTGGTGGAAGGTTGGCGCATCTGGCGCGACTACCGCTTTGCCTATAACAATGCCGAGAACATGGTCAGCAACCTGGCCCGGGCCACGGCGCAGCACGcc                                                                                                                         >  8:169981/1‑147 (MQ=255)                               ttCCGCCTGGTACTGGCATTCATGCTGGTGGTGATGCTGGCATTTGTACTGGTGGAAGGTTGGCGCATCTGGCGCGACTACCGCTTTGCCTATAACAATGCCGAGAACATGGTCAGCAACCTGGCCCGGGCCACGGCGCAGCACGCCGa                                                                                                                       <  6:80155/149‑1 (MQ=255)                                  cGCCTGGTACTGGCATTCATGCTGGTGGTGATGCTGGCATTTGTACTGGTGGAAGGTTGGCGCATCTGGCGCGACTACCGCTTTGCCTATAACAATGCCGAGAACATGGTCAGCAACCTGGCCCgg                                                                                                                                           <  8:156322/126‑1 (MQ=255)                                  cGCCTGGTACTGGCATTCATGCTGGTGGTGATGCTGGCATTTGTACTGGTGGAAGGTTGGCGCATCTGGCGCGACTACCGCTTTGCCTATAACAATGCCGAGAACATGGTCAGCAACCTGGCCCgg                                                                                                                                           >  7:156322/1‑126 (MQ=255)                                  cGCCTGGTACTGGCATTCATGCTGGTGGTGATGCTGGCATTTGTACTGGTGGAAGGTTGGCGCATCTGGCGCGACTACCGCTTTGCCTATAACAATGCCGAGAACATGGTCAGCAACCTGGCCCGGGCCACGGCGCAGCACGCCGAGGa                                                                                                                    >  5:51767/1‑149 (MQ=255)                                        gTACTGGCATTCATGCTGGTGGTGATGCTGGCATTTGTACTGGTGGAAGGTTGGCGCATCTGGCGCGACTACCGCTTTGCCTATAACAATGCCGAGAACATGGTCAGCAACCTGGCCCGGGCCACGGCGCAGCACGCCGAGGACGCTAt                                                                                                              >  7:157096/1‑149 (MQ=255)                                            tGGCATTCATGCTGGTGGTGATGCTGGCATTTGTACTGGTGGAAGGTTGGCGCATCTGGCGCGACTACCGCTTTGCCTATAACAATGCCGAGAACATGGTCAGCAACCTGGCCCGGGCCACGGCGCAGCACGCCGAGGACGCTATCCGc                                                                                                          >  5:71337/1‑149 (MQ=255)                                                aTTCATGCTGGTGGTGATGCTGGCATTTGTACTGGTGGAAGGTTGGCGCATCTGGCGCGACTACCGCTTTGCCTATAACAATGCCGAGAACATGGTCAGCAACCTGGCCCGGGCCACGGCGCAGCACGCCGAGGACGCTATCCGCCAgg                                                                                                      >  4:271789/1‑149 (MQ=255)                                                  cgtttttgctgggccagcaaggcatgcaggcggggccggtcgatgtgatcgaaaccatcgccttccaggcgctcggccaaggcaccggtaatggcgtcgACCTGGCCCGGGCCACGGCGCAGCACGCCGAGGACGCTATCCGCCAGGTc                                                                                                    >  5:237109‑M1/100‑149 (MQ=255)                                                     ttttgctgggccagcaaggcatgcaggcggggccggtcgatgtgatcgaaaccatcgccttccaggcgctcggccaaggcaccggtaatggcgtcgACCTGGCCCGGGCCACGGCGCAGCACGCCGAGGACGCTATCCGCCAGGTCGAc                                                                                                 <  3:203780‑M1/53‑1 (MQ=255)                                                      tttgctgggccagcaaggcatgcaggcggggccggtcgatgtgatcgaaaccatcgccttccaggcgctcggccaaggcaccggtaatggcgtcgACCTGGCCCGGGCCACGGCGCAGCACGCCGAGGACGCTATCCGCCAGGTCGAc                                                                                                 >  4:203780‑M1/96‑148 (MQ=255)                                                             gtgATGCTGGCATTTGTACTGGTGGAAGGTTGGCGCATCTGGCGCGACTACCGCTTTGCCTATAACAATGCCGAGAACATGGTCAGCAACCTGGCCCGGGCCACGGCGCAGCACGCCGAGGACGCTATCCGCCAGGTCGACGCCATTa                                                                                          <  7:169981/148‑1 (MQ=255)                                                              tgATGCTGGCATTTGTACTGGTGGAAGGTTGGCGCATCTGGCGCGACTACCGCTTTGCCTATAACAATGCCGAGAACATGGTCAGCAACCTGGCCCGGGCCACGGCGCAGCACGCCGAGGACGCTATCCGCCAGGTCGACGCCATTAcc                                                                                        >  5:238284/1‑149 (MQ=255)                                                              tgATGCTGGCATTTGTACTGGTGGAAGGTTGGCGCATCTGGCGCGACTACCGCTTTGCCTATAACAATGCCGAGAACATGGTCAGCAACCTGGCCCGGGCCACGGCGCAGCACGCCGAGGACGCTATCCGCCAGGTCGACGCCATTAcc                                                                                        >  5:199325/1‑149 (MQ=255)                                                                  gCTGGCATTTGTACTGGTGGAAGGTTGGCGCATCTGGCGCGACTACCGCTTTGCCTATAACAATGCCGAGAACATGGTCAGCAACCTGGCCCGGGCCACGGCGCAGCACGCCGAGGACGCTATCCGCCAGGTCGACGCCATTACCGGTg                                                                                    >  1:282092/1‑149 (MQ=255)                                                                      gCATTTGTACTGGTGGAAGGTTGGCGCATCTGGCGCGACTACCGCTTTGCCTATAACAATGCCGAGAACATGGTCAGCAACCTGGCCCGGGCCACGGCGCAGCACGCCGa                                                                                                                       <  7:51952/110‑1 (MQ=255)                                                                      gCATTTGTACTGGTGGAAGGTTGGCGCATCTGGCGCGACTACCGCTTTGCCTATAACAATGCCGAGAACATGGTCAGCAACCTGGCCCGGGCCACGGCGCAGCACGCCGa                                                                                                                       >  8:51952/1‑110 (MQ=255)                                                                        aTTTGTACTGGTGGAAGGTTGGCGCATCTGGCGCGACTACCGCTTTGCCTATAACAATGCCGAGAACATGGTCAGCAACCTGGCCCGGGCCACGGCGCAGCACGCCGAGGACGCTATCCGCCAGGTCGACGCCATTACCGGTGCCTTgg                                                                              >  5:221656/1‑149 (MQ=255)                                                                         tttGTACTGGTGGAAGGTTGGCGCATCTGGCGCGACTACCGCTTTGCCTATAACAATGCCGAGAACATGGTCAGCAACCTGGCCCGGGCCACGGCGCAGCACGCCGAGGACGCTATCCGCCAGGTCGACGCCATTACCGGTGCCTTGGc                                                                             <  5:309802/149‑1 (MQ=255)                                                                                             gcgcATCTGGCGCGACTACCGCTTTGCCTATAACAATGCCGAGAACATGGTCAGCAACCTGGCCCGGGCCACGGCGCAGCACGCCGAGGACGCTATCCGCCAGGTCGACGCCATTACCGGTGCCTTGGCCGAGCGCCTGGAAGGCGATg                                                         <  6:71337/149‑1 (MQ=255)                                                                                             gcgcATCTGGCGCGACTACCGCTTTGCCTATAACAATGCCGAGAACATGGTCAGCAACCTGGCCCGGGCCACGGCGCAGCACGCCGAGGACGCTATCCGCCAGGTCGACGCCATTACCGGTGCCTTGGCCGAGCGCCTGGAAGGCGATg                                                         <  8:157096/149‑1 (MQ=255)                                                                                                 aTCTGGCGCGACTACCGCTTTGCCTATAACAATGCCGAGAACATGGTCAGCAACCTGGCCCGGGCCACGGCGCAGCACGCCGAGGACGCTATCCGCCAGGTCGACGCCATTACCGGTGCCTTGGCCGAGCGCCt                                                                    <  3:127979/134‑1 (MQ=255)                                                                                                 aTCTGGCGCGACTACCGCTTTGCCTATAACAATGCCGAGAACATGGTCAGCAACCTGGCCCGGGCCACGGCGCAGCACGCCGAGGACGCTATCCGCCAGGTCGACGCCATTACCGGTGCCTTGGCCGAGCGCCt                                                                    >  4:127979/1‑134 (MQ=255)                                                                                                    tGGCGCGACTACCGCTTTGCCTATAACAATGCCGAGAACATGGTCAGCAACCTGGCCCGGGCCACGGCGCAGCACGCCGAGGACGCTATCCGCCAGGTCGACGCCAtt                                                                                           <  3:115312/108‑1 (MQ=255)                                                                                                    tGGCGCGACTACCGCTTTGCCTATAACAATGCCGAGAACATGGTCAGCAACCTGGCCCGGGCCACGGCGCAGCACGCCGAGGACGCTATCCGCCAGGTCGACGCCAtt                                                                                           >  4:115312/1‑108 (MQ=255)                                                                                                      gcgcGACTACCGCTTTGCCTATAACAATGCCGAGAACATGGTCAGCAACCTGGCCCGGGCCACGGCGCAGCACGCCGAGGACGCTATCCGCCAGGTCGACGCCATTACCGGTGCCTTGGCCGAGCGCCTGGAAGGCGATGGTTTCGAt                                                 <  2:282092/148‑1 (MQ=255)                                                                                                        gcgACTACCGCTTTGCCTATAACAATGCCGAGAACATGGTCAGCAACCTGGCCCGGGCCACGGCGCAGCACGCCGAGGACGCTATCCGCCAGGTCGACGCCATTACCGGTGCCTTGGCCGAGCGCCTGGAAGGCGATGGTTTCGATc                                                <  3:166065/147‑1 (MQ=255)                                                                                                        gcgACTACCGCTTTGCCTATAACAATGCCGAGAACATGGTCAGCAACCTGGCCCGGGCCACGGCGCAGCACGCCGAGGACGCTATCCGCCAGGTCGACGCCATTACCGGTGCCTTGGCCGAGCGCCTGGAAGGCGATGGTTTCGATc                                                >  4:166065/1‑147 (MQ=255)                                                                                                             tACCGCTTTGCCTATAACAATGCCGAGAACATGGTCAGCAACCTGGCCCGGGCCACGGCGCAGCACGCCGAGGACGCTATCCGCCAGGTCGACGCCATTACCGGTGCCTTGGCCGAGCGCCTGGAAGGCGATGGTTTCGATCACATCGa                                         >  3:194051/1‑149 (MQ=255)                                                                                                               ccGCTTTGCCTATAACAATGCCGAGAACATGGTCAGCAACCTGGCCCGGGCCACGGCGCAGCACGCCGAGGACGCTATCCGCCAGGTCGACGCCATTACCGGTGCCTTGGCCGAGCGCCTGGAAGGCGATGGTTTCGATCACATCGAcc                                       >  7:269412/1‑149 (MQ=255)                                                                                                               ccGCTTTGCCTATAACAATGCCGAGAACATGGTCAGCAACCTGGCCCGGGCCACGGCGCAGCACGCCGAGGACGCTATCCGCCAGGTCGACGCCATTACCGGTGCCTTGGCCGAGCGCCTGGAAGGCGATGGTTTCGATCACATCGAc                                        <  6:9181/148‑1 (MQ=255)                                                                                                                cGCTTTGCCTATAACAATGCCGAGAACATGGTCAGCAACCTGGCCCGGGCCACGGCGCAGCACGCCGAGGACGCTATCCGCCAGGTCGACGCCATTACCGGTGCCTTGGCCGAGCGCCTGGAAGGCGATGGTTTCGATCACATCGACCg                                      <  6:238284/149‑1 (MQ=255)                                                                                                                       ccTATAACAATGCCGAGAACATGGTCAGCATCCTGGCCCGGGCCACGGCGCAGCACGCCGAGGACGCTATCCGCCAGGTCGACGCCATTACCGGTGCCTTGGCCGAGCGCCTGGAAGGCGATGGTTTCGATCACATCGACCGGCCCCGc                               >  1:27408/1‑149 (MQ=255)                                                                                                                        cTATAACAATGCCGAGAACATGGTCAGCAACCTGGCCCGGGCCACGGCGCAGCACGCCGAGGACGCTATCCGCCAGGTCGACGCCATTAc                                                                                         >  4:192653/1‑90 (MQ=255)                                                                                                                        cTATAACAATGCCGAGAACATGGTCAGCAACCTGGCCCGGGCCACGGCGCAGCACGCCGAGGACGCTATCCGCCAGGTCGACGCCATTAc                                                                                         <  3:192653/90‑1 (MQ=255)                                                                                                                        cTATAACAATGCCGAGAACATGGTCAGCAACCTGGCCCGGGCCACGGCGCAGCACGCCGAGGACGCTATCCGCCAGGTCGACGCCATTACCGGTGCCTTGGCCGAGCGCCTGGAAGGCGATGGTTTCGATCACATCGACCGGCCCCGcc                              >  5:327312/1‑149 (MQ=255)                                                                                                                         tataACAATGCCGAGAACATGGTCAGCAACCTGGCCCGGGCCACGGCGCAGCACGCCGAGGACGCTATCCGCCAGGTCGACGCCATTACCGGTGCCTTGGCCGAGCGCCTGGAAGGCGATGGTTTCGATCACATCGACCGGCCCCGCCt                             >  5:117808/1‑149 (MQ=255)                                                                                                                           taACAATGCCGAGAACATGGTCAGCAACCTGGCCCGGGCCACGGCGCAGCACGCCGAGGACGCTATCCGCCAGGTCGACGCCATTACCGGTGCCTTGGCCGAGCGCCTGGAAGGCGATGGTTTCGATCACATCGACCGGCCCCGCCTg                            >  1:53170/1‑148 (MQ=255)                                                                                                                            aaCAATGCCGAGAACATGGTCAGCAACCTGGCCCGGGCCACGGCGCAGCACGCCGAGGACGCTATCCGCCAGGTCGACGCCATTACCGGTGCCTTGGCCGAGCGCCTGGAAGGCGATg                                                         <  4:218229/118‑1 (MQ=255)                                                                                                                            aaCAATGCCGAGAACATGGTCAGCAACCTGGCCCGGGCCACGGCGCAGCACGCCGAGGACGCTATCCGCCAGGTCGACGCCATTACCGGTGCCTTGGCCGAGCGCCTGGAAGGCGATg                                                         >  3:218229/1‑118 (MQ=255)                                                                                                                             aCAATGCCGAGAACATGGTCAGCAACCTGGCCCGGGCCACGGCGCAGCACGCCGAGGACGCTATCCGCCAGGTCGACGCCATTACCGGTGCCTTGGCCGAGCGCCTGGAAGGCGATGGTTTCGATCACATCGACCGGCCCCGCCTGCAt                         <  4:194051/149‑1 (MQ=255)                                                                                                                                   ccGAGAACATGGTCAGCAACCTGGCCCGGGCCACGGCGCAGCACGCCGAGGACGCTATCCGCCAGGTCGACGCCATTACCGGTGCCTTGGCCGAGCGCCTGGAAGGCGATGGTTTCGATCACATCGACCGGCCCCGCCTGCATGCCTTg                   <  6:199325/149‑1 (MQ=255)                                                                                                                                    cGAGAACATGGTCAGCAACCTGGCCCGGGCCACGGCGCAGCACGCCGAGGACGCTATCCGCCAGGTCGACGCCATTACCGGTGCCTTGGCCGAGCGCCTGGAAGGCGATGGTTTCGATCACATCGACCGGCCCCGCCTGCATGCCTTGc                  >  6:87646/1‑149 (MQ=255)                                                                                                                                      agaACATGGGCAGCAACCTGGCCCGGGCCACGGCGCAGCACGCCGAGGACGCTATCCGCCAGGTCGACGCCATTACCGGTGCCTTGGCCGAGCGCCTGGAAGGCGATGGTTTCGATCACATCGACCGGCCCCGCCTGCATGCCTTGCTg                <  2:271948/149‑1 (MQ=255)                                                                                                                                           aTGGTCAGCAACCTGGCCCGGGCCACGGCGCAGCACGCCGAGGACGCTATCCGCCAGGTCGACGCCATTACCGGTGCCTTGGCCGAGCGCCTGGAAGGCGATGGTTTCGATCACATCGACCGGCCCCGCCTGCATGCCTTGCTGGcc             >  8:52124/1‑147 (MQ=255)                                                                                                                                                 aGCAACCTGGCCCGGGCCACGGCGCAGCACGCCGAGGACGCTATCCGCCAGGTCGACGCCATTACCGGTGCCTTGGCCGAGCGCCTGGAAGGCGATGGTTTCGATCACATCGACCGGCCCCGCCTGCATGCCTTGCTGGCCCAGCaaa      >  8:82991/1‑148 (MQ=255)                                                                                                                                                     ACCTGGCCCGGGCCACGGCGCAGCACGCCGAGGACGCTATCCGCCAGGTCGACGCCATTACCGGTGCCTTGGCCGAGCGCCTGGAAGGCGATGGTTTCGATCACATCGACCGGCCCCGCCTGCATGCCTTGCTGGCCCAGCAAAAACg  <  2:75906‑M1/148‑1 (MQ=255)                                                                                                                                                     |                                                                                                                                                    ATCAGTGGCGAGGGCCGCGCCGTGGCGCTGTTCCGCCTGGTACTGGCATTCATGCTGGTGGTGATGCTGGCATTTGTACTGGTGGAAGGTTGGCGCATCTGGCGCGACTACCGCTTTGCCTATAACAATGCCGAGAACATGGTCAGCAACCTGGCCCGGGCCACGGCGCAGCACGCCGAGGACGCTATCCGCCAGGTCGACGCCATTACCGGTGCCTTGGCCGAGCGCCTGGAAGGCGATGGTTTCGATCACATCGACCGGCCCCGCCTGCATGCCTTGCTGGCCCAGCAAAAACG  >  NC_002947/3677040‑3677335

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.