New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 3934402	59 (1.140)	4 (0.080)	3/248	NT	6.3%	coding (1011/1911 nt)	PP_3467	sigma‑54 dependent transcriptional regulator
	?	NC_002947	= 3934434	63 (1.280)					coding (979/1911 nt)	PP_3467	sigma‑54 dependent transcriptional regulator

GGTTTGTCGGCACGCGGGCTGGCCTGGTGCAAGGCCCGAGCGACCACTTCCTTGCCGGTACCGGTTTCGCCCAGCAGCAGCACTGGCAAACCATTGCCCAGCCCCTGGCGAGCCATGCGCAGGTTGCGCGCCAGGCGTTGATCACCTCCGGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/3934250‑3934402 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccggccTTGAGCAAACAGTCGCCTGCACTCGATGCTCTGGCCGGAGGTGATCAACGCCTGGCGCGCAACCTGCGCATGGCTCGCCAGGGGCTGGGCAATGGTTTGCCAGTGCTGCTGCTGGGCGAAACCGGTACCGGCAAGGAAGTGGTC  <  NC_002947/3934434‑3934291                                                                                                                                                                                                                                                                                                           GGTTTGTCGGCACGCGGGCTGGCCTGGTGCAAGGCCCGAGCGACCACTTCCTTGCCGGTACCGGTTTCGCCCAGCAGCAGCACTGGCAAACCATTGCCCAGCCCCTGGCGAGCCATGCGCAGGTTGCGCGCCAGGCGTTGATCACCTCC                                                                                                                                                      <  4:110739/149‑1       TCGGCACGCGGGCTGGCCTGGTGCAAGGCCCGAGCGACCACTTCCTTGCCGGTACCGGTTTCGCCCAGCAGCAGCACTGGCAAACCCTTGCCCAGCCCCTGGCGAGCCATGCGCAGGTTGCGCGCCAGGCGTTGATCACCTCCGGC                                                                                                                                                   >  7:268169/1‑146       TCGGCACGCGGGCTGGCCTGGTGCAAGGCCCGAGCGACCACTTCCTTGCCGGTACCGGTTTCGCCCAGCAGCAGCACTGGCAAACCATTGCCCAGCCCCTGGCGAGCCATGCGCAGGTTGCGCGCCAGGCGTTGATCACCTCCGGC                                                                                                                                                   >  4:120815/1‑146                                            CCACTTCCTTGCCGGTACCGGTTTCGCCCAGCAGCAGCACTGGCAAACCATTGCCCAGCCCCTGGCGAGCCATGCGCAGGTTGCGCGCCAGGCGTTGATCACCTCCGGCCTTGAGCAAACAGTCGCCTGCACTCGATGCTCTGGCCGGA                                                                                                           <  1:257553/149‑1                                             CACTTCCTTGCCGGTACCGGTTTCGCCCAGCAGCAGCACTGGCAAACCATTGCCCAGCCCCTGGCGAGCCATGCGCAGGTTGCGCGCCAGGCGTTGATCACCTCCGGCCTTGAGCAAACAGTCGCCTGCACTCGATGCTCTGGCCGGAG                                                                                                          <  5:72287/149‑1                                                             CCGGTTTCGCCCAGCAGCAGCACTGGCAAACCATTGCCCAGCCCCTGGCGAGCCATGCGCAGGTTGCGCGCCAGGCGTTGATCACCTCCGGCCTTGAGCAAACAGTCGCCTGCACTCGATGCTCTGGCCGGAG                                                                                                          <  1:326093/133‑1                                                             CCGGTTTCGCCCAGCAGCAGCACTGGCAAACCATTGCCCAGCCCCTGGCGAGCCATGCGCAGGTTGCGCGCCAGGCGTTGATCACCTCCGGCCTTGAGCAAACAGTCGCCTGCACTCGATGCTCTGGCCGGAG                                                                                                          >  2:326093/1‑133                                                                                                                                                     CGGCCTTGAGCAAACAGTCGCCTGCACTCGATGCTCTGGCCGGAGGTGATCAACGCCTCGCGCGCAACCTGCGCATGGCTCGCCAGGGGCTGGGCAATGGTTTGCCAGTGCTGCTGCTGGGCGAAACCGGTACCGGCAAGGAAGTGGTC  >  4:249942/1‑149                                                                                                                                                                                                                                                                                                           GGTTTGTCGGCACGCGGGCTGGCCTGGTGCAAGGCCCGAGCGACCACTTCCTTGCCGGTACCGGTTTCGCCCAGCAGCAGCACTGGCAAACCATTGCCCAGCCCCTGGCGAGCCATGCGCAGGTTGCGCGCCAGGCGTTGATCACCTCCGGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/3934250‑3934402 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccggccTTGAGCAAACAGTCGCCTGCACTCGATGCTCTGGCCGGAGGTGATCAACGCCTGGCGCGCAACCTGCGCATGGCTCGCCAGGGGCTGGGCAATGGTTTGCCAGTGCTGCTGCTGGGCGAAACCGGTACCGGCAAGGAAGTGGTC  <  NC_002947/3934434‑3934291

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.