| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 4099369 = | 44 (0.850) | 3 (0.060) | 3/248 | NT | 6.5% | coding (649/1215 nt) | PP_3607 | membrane protein |
| ? | NC_002947 | 4099406 = | 44 (0.890) | coding (612/1215 nt) | PP_3607 | membrane protein | |||||
GTGGTGCTTGAGAAGCGCCGGCATGGCGCGCTTGAAGCAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/4099408‑4099369‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aagcacCACGGTGGCCCAGGCGATCAGCCCGAACACTGCCAGGCTTGCCAGCACCGCAGGCCCTATCCCCCACACCTGCACGATCGAGGTGGCCGGAAGCGACGGCAAGGCAAACCACCAATCGGCATGGTGGGTGGCGCTGACCGAGC > NC_002947/4099406‑4099548 GTGGTGCTTGAGAAGCGCCGGCATGGCGCGCTTGAAGCACCACGGTGGCCCAGGCGATCGGCCCGAACACTGCCAGGCTTGCCAGCACCGCAGGCCCTATCCCCCACACCTGCACGATCGAG > 7:42134/1‑122GTGGTGCTTGAGAAGCGCCGGCATGGCGCGCTTGAAGCACCACGGTGGCCCAGGCGATCAGCCCGAACACTGCCAGGCTTGCCAGCACCGCAGGCCCTATCCCCCACACCTGCACGATCGAG < 8:42134/122‑1 TGGTGCTTGAGAAGCGCCGGCATGGCGCGCTTGAAGCACCACGGTGGCCCAGGCGATCAGCCCGAACACTGCCAGGCTTGCCAGCACCGCAGGCCCTATCCCCCACACCTGCACGATCGAGGTGGCCGGAAGCGACGGCAAGGCAAAC > 2:173869/1‑148 GCTTGAAGCACCACGGTGGCCCAGGCGATCAGCCCGAACACTGCCAGGCTTGCCAGCACCGCAGGCCCTATCCCCCACACCTGCACGATCGAGGTGGCCGGAAGCGACGGCAAGGCAAACCACCAATCGGCATGGTGGGTGGCGCTGAC < 1:173869/149‑1 AAGCACCACGGTGGCCCAGGCGATCAGCCCGAACACTGCCAGGCTTGCCAGCACCGCAGGCCCTATCCCCCACACCTGCACGATCGAGGTGGCCGGAAGCGACGGCAAGGCAAACCACCAATCGGCATGGTGGGTGGCGCTGACCGAGC > 6:36039/1‑149 AAGCACCACGGTGGCCCAGGCGATCAGCCCGAACACTGCCAGGCTTGCCAGCACCGCAGGCCCTATCCCCCACACCTGCACGATCGAGGTGGCCGGAAGCGACGGCAAGGCAAACCACCAATCGGCATGGTGGGTGGC > 3:127149/1‑138 AAGCACCACGGTGGCCCAGGCGATCAGCCCGAACACTGCCAGGCTTGCCAGCACCGCAGGCCCTATCCCCCACACCTGCACGATCGAGGTGGCCGGAAGCGACGGCAAGGCAAACCACCAATCGGCATGGTGGGTGGC < 4:127149/138‑1 ACCACGGTGGCCCAGGCGATCAGCCCGAACACTGCCAGGCTTGCCAGCACCGCAGGCCCTATCCCCCACACCTGCACGATCGAGGTGGCCGGAAGCGACGGCAAGGCAAACCACCAATCGGCATGGTGGGTGGCGCTGAC < 5:234550/140‑1 ACCACGGTGGCCCAGGCGATCAGCCCGAACACTGCCAGGCTTGCCAGCACCGCAGGCCCTATCCCCCACACCTGCACGATCGAGGTGGCCGGAAGCGACGGCAAGGCAAACCACCAATCGGCATGGTGGGTGGCGCTGAC > 6:234550/1‑140 GTGGTGCTTGAGAAGCGCCGGCATGGCGCGCTTGAAGCAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/4099408‑4099369‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aagcacCACGGTGGCCCAGGCGATCAGCCCGAACACTGCCAGGCTTGCCAGCACCGCAGGCCCTATCCCCCACACCTGCACGATCGAGGTGGCCGGAAGCGACGGCAAGGCAAACCACCAATCGGCATGGTGGGTGGCGCTGACCGAGC > NC_002947/4099406‑4099548 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |