New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	4099369 =	44 (0.850)	3 (0.060)	3/248	NT	6.5%	coding (649/1215 nt)	PP_3607	membrane protein
	?	NC_002947	4099406 =	44 (0.890)					coding (612/1215 nt)	PP_3607	membrane protein

GGCGAAAGCCGAGGTAATGCCCCAAGGCCGCCCCGCCAGCGCCAAGGTCGCGTAGTTCAGCAAGGCCAGGGCGATGGCGCCCCACAGCAAGGGCCAGGGGCCACGCAGGAAGCGTCGAAGGCCTTGGTGCTCGCTGGCAGGCAGTGCTTCAAGCGCGCCATGCCGGCGCTTCTCAAGCACCACGGTGGCCCAGGCGATCAGCCCGAACACTGCCAGGCTTGCCAGCACCGCAGGCCCTATCCCCCACACCTG‑CACGATCGAGGTGGCCGGAAGCGACGGCAAGGCAAA  >  NC_002947/4099226‑4099513                                                                                                                                                |                                                                                                                                                  ggCGAAAGCCGAGGTAATGCCCCAAGGCCGCCCCGCCAGCGCCAAGGTCGCGTAGTTCAGCAAGGCCAGGGCGATGGCGCCCCACAGCAAGGGCCAGGGGCCACGCAGGAAGCGTCGAAGGCCTTGGTGCTCGCTGGCAGGCAGTGCtt                                                                                                                                              >  1:107598/1‑149 (MQ=255) gctcggtcagcgccacccaccatgccgattggtggtttgccttgccgtcgcttccggccacctcgatcgtgcaggtgtgggggatagggcctgcggtgctggcaagcctggcagtgttcgggctgatcgcctgggccaccgtgGTGCtt                                                                                                                                              >  6:36039‑M1/144‑149 (MQ=255)  gCGAAAGCCGAGGTAATGCCCCAAGGCCGCCCCGCCAGCGCCAAGGTCGCGTAGTTCAGCAAGGCCAGGGCGATGGCGCCCCACAGCAAGGGCCAGGGGCCCCGCAGGAAGCGTCGAAGGCCTTGGTGATCGATGGCAGGCAGTGCtt                                                                                                                                              >  6:16188/1‑148 (MQ=255)      gtcagcgccacccaccatgccgattggtggtttgccttgccgtcgcttccggccacctcgatcgtgcaggtgtgggggatagggcctgcggtgctggcaagcctggcagtgttcgggctgatcgcctgggccaccgtggt                                                                                                                                                  >  6:234550‑M1/139‑140 (MQ=255)      gtcagcgccacccaccatgccgattggtggtttgccttgccgtcgcttccggccacctcgatcgtgcaggtgtgggggatagggcctgcggtgctggcaagcctggcagtgttcgggctgatcgcctgggccaccgtggt                                                                                                                                                  <  5:234550‑M1/2‑1 (MQ=255)      gtcagcgccacccaccatgccgattggtggtttgccttgccgtcgcttccggccacctcgatcgtgcaggtgtgggggatagggcctgcggtgctggcaagcctggcagtgttcgggctgatcgcctgggccaccgtgGTGCTTCAAgc                                                                                                                                         <  1:173869‑M1/11‑1 (MQ=255)       aGCCGAGGTAATGCCCCAAGGCCGCCCCGCCAGCGCCAAGGTCGCGTAGTTCAGCAAGGCCAGGGCGATGGCGCCCCACAGCAAGGGCCAGGGGCCACGCAGGAAGCGTCGAAGGCCTTGGTGCTCGCTGGCAGGCAGTGCTTCAAgcg                                                                                                                                        >  7:206306/1‑149 (MQ=255)        gCCGAGGTAATGCCCCAAGGCCGCCCCGCCAGCGCCAAGGTCGCGTAGTTCAGCAAGGCCAGGGCGATGGCGCCCCACAGCAAGGGCCAGGGGCCACGCAGGAAGCGTCGAAGGCCTTGGTGCTCGCTGGCAGGCAGTGCTTCAAgcgc                                                                                                                                       <  7:141806/149‑1 (MQ=255)            gccacccaccatgccgattggtggtttgccttgccgtcgcttccggccacctcgatcgtgcaggtgtgggggatagggcctgcggtgctggcaagcctggcagtgttcgggctgatcgcctgggccaccgtgGTGCtt                                                                                                                                              <  4:127149‑M1/6‑1 (MQ=255)            gccacccaccatgccgattggtggtttgccttgccgtcgcttccggccacctcgatcgtgcaggtgtgggggatagggcctgcggtgctggcaagcctggcagtgttcgggctgatcgcctgggccaccgtgGTGCtt                                                                                                                                              >  3:127149‑M1/133‑138 (MQ=255)                  tGCCCCAAGGCCGCCCCGCCAGCGCCAAGGTCGCGTAGTTCAGCAAGGCCAGGGCGATGGCGCCCCACAGCAAGGGCCAGGGGCCACGCAGGAAGCGTCGAAGGCCTTGGTGCTCGCTGGCAGGCAGTGCTTCAAGCGCGCCATGCCgg                                                                                                                             <  1:249245/149‑1 (MQ=255)                    ccccAAGGCCGCCCCGCCAGCGCCAAGGTCGCGTAGTTCAGCAAGGCCAGGGCGATGGCGCCCCACAGCAAGGGCCAGGGGCCACGCAGGAAGCGTCGAAGGCCTTGGTGCTCGCTGGCAGGCAGTGCTTCAAGCGCGCCATGCCGgc                                                                                                                            <  3:105779/148‑1 (MQ=255)                    ccccAAGGCCGCCCCGCCAGCGCCAAGGTCGCGTAGTTCAGCAAGGCCAGGGCGATGGCGCCCCACAGCAAGGGCCAGGGGCCACGCAGGAAGCGTCGAAGGCCTTGGTGCTCGCTGGCAGGCAGTGCTTCAAGCGCGCCATGCCGgc                                                                                                                            <  8:236507/148‑1 (MQ=255)                     cccAAGGCCGCCCCGCCAGCGCCAAGGTCGCGTAGTTCAGCAAGGCCAGGGCGATGGCGCCCCACAGCAAGGGCCAGGGGCCACGCAGGAAGCGTCGAAGGCCTTGGTGCTCGCTGGCAGGCAGTGCTTCAAGCGCGCCATGCCGgcgc                                                                                                                          >  8:265280/1‑149 (MQ=255)                     cccAAGGCCGCCCCGCCAGCGCCAAGGTCGCGTAGTTCAGCAAGGCCAGGGCGATGGCGCCCCACAGCAAGGGCCAGGGGCCACGCAGGAAGCGTCGAAGGCCTTGGTGCTCGCTGGCAGGCAGTGCTTCAAGCGCGCCATGCCGgcgc                                                                                                                          >  6:322219/1‑149 (MQ=255)                       cAAGGCCGCCCCGCCAGCGCCAAGGTCGCGTAGTTCAGCAAGGCCAGGGCGATGGCGCCCCACAGCAAGGGCCAGGGGCCACGCAGGAAGCGTCGAAGGCCTTGGTGCTCGCTGGCAGGCAGTGCTTCAAGCGCGCCATGCCGGCGCtt                                                                                                                        <  2:107598/149‑1 (MQ=255)                          ggCCGCCCCGCCAGCGCCAAGGTCGCGTAGTTCAGCAAGGCCAGGGCGATGGCGCCCCACAGCAAGGGCCAGGGGCCACGCAGGAAGCGTCGAAGGCCTTGGTGCTCGCTGGCAGGCAGTGCTTCAAGCGCGCCATGCCGGCGCTtctc                                                                                                                     <  7:227035/149‑1 (MQ=255)                                   gtttgccttgccgtcgcttccggccacctcgatcgtgcaggtgtgggggatagggcctgcggtgctggcaagcctggcagtgttcgggctgatcgcctgggccaccgtgGTGCTTCAAGCGCGCCATGCCGGCGCTTCTCAAGcacca                                                                                                             >  2:173869‑M1/110‑148 (MQ=255)                                       gcgcCAAGGTCGCGTAGTTCAGCAAGGCCAGGGCGATGGCGCCCCACAGCAAGGGCCAGGGGCCACGCAGGAAGCGTCGAAGGCCTTGGTGCTCGCTGGCAGGCAGTGCTTCAAGCGCGCCATGCCGGCGCTTCTCAAGCACCACGGTg                                                                                                        <  3:125598/149‑1 (MQ=255)                                        cgcCAAGGTCGCGTAGTTCAGCAAGGCCAGGGCGATGGCGCCCCACAGCAAGGGCCAGGGGCCACGCAGGAAGCGTCGAAGGCCTTGGTGCTCGCTGGCAGGCAGTGCTTCAAGCGCGCCATGCCGGCGCTTCTCAAGCACCACGGTgg                                                                                                       <  8:156025/149‑1 (MQ=255)                                         gcCAAGGTCGCGTAGTTCAGCAAGGCCAGGGCGATGGCGCCCCACAGCAAGGGCCAGGGGCCACGCAGGAAGCGTCGAAGGCCTTGGTGCTCGCTGGCAGGCAGTGCTTCAAGCGCGCCATGCCGGCGCTTCTCAAGCACCACGGTGGc                                                                                                      >  3:80388/1‑149 (MQ=255)                                            aaGGTCGCGTAGTTCAGCAAGGCCAGGGCGATGGCGCCCCACAGCAAGGGCCAGGGGCCACGCAGGAAGCGTCGAAGGCCTTGGTGCTCGCTGGCAGGCAGTGCTTCAAGCGCGCCATGCCGGCGCTTCTCAAGCACCACGGTGGCCCa                                                                                                   <  8:206306/149‑1 (MQ=255)                                                  gcgTAGTTCAGCAAGGCCAGGGCGATGGCGCCCCACAGCAAGGGCCAGGGGCCACGCAGGAAGCGTCGAAGGCCTTGGTGCTCGCTGGCAGGCAGTGCTTCAAGCGCGCCATGCCGGCGCTTCTCAAGCACCACGGTGGCCCAGGCGAt                                                                                             <  7:126470/149‑1 (MQ=255)                                                        ttCAGCAAGGCCAGGGCGATGGCGCCCCACAGCAAGGGCCAGGGGCCACGCAGGAAGCGTCGAAGGCCTTGGTGCTCGCTGGCAGGCAGTGCTTCAAGCGCGCCATGCCGGCGCTTCTCAAGCACCACGGTGGCCCAGGCGATCAGccc                                                                                       >  5:164528/1‑149 (MQ=255)                                                              ctcgatcgtgcaggtgtgggggatagggcctgcggtgctggcaagcctggcagtgttcgggctgatcgcctgggccaccgtgGTGCTTCAAGCGCGCCATGCCGGCGCTTCTCAAGcaccac                                                                                                            <  8:42134‑M1/40‑1 (MQ=255)                                                              ctcgatcgtgcaggtgtgggggatagggcctgcggtgctggcaagcctggcagtgttcgggccgatcgcctgggccaccgtgGTGCTTCAAGCGCGCCATGCCGGCGCTTCTCAAGcaccac                                                                                                            >  7:42134‑M1/83‑122 (MQ=255)                                                               acgCCAGGGCGATGGCGCCCCACAGCAAGGGCCAGGGGCCACGCAGGAAGCGTCGAAGGCCTTGGTGCTCGCTGGCAGGCAGTGCTTCAAGCGCGCCATGCCGGCGCTTCTCAAGCACCACGGTGGCCCAGGCGATCAGCCCGAACACt                                                                                <  5:16188/147‑1 (MQ=255)                                                               aGGCCAGGGCGATGGCGCCCCACAGCAAGGGCCAGGGGCCACGCAGGAAGCGTCGAAGGCCTTGGTGCTCGCTGGCAGGCAGTGCTTCAAGCGCGCCATGCCGGCGCTTCTCAAGCACCACGGTGGCCCAGGCGATCAGCCCGAACACt                                                                                <  2:271588/149‑1 (MQ=255)                                                               aGGCCAGGGCGATGGCGCCCCACAGCAAGGGCCAGGGGCCACGCAGGAAGCGTCGAAGGCCTTGGTGCTCGCTGGCAGGCAGTGCTTCAAGCGCGCCATGCCGGCGCTTCTCAAGCACCACGGTGGCCCAGGCGATCAGCCCGAACACt                                                                                >  8:89643/1‑149 (MQ=255)                                                                 gCCAGGGCGATGGCGCCCCACAGCAAGGGCCAGGGGCCACGCAGGAAGCGTCGAAGGCCTTGGTGCTCGCTGGCAGGCAGTGCTTCAAGCGCGCCATGCCGGCGCTTCTCAAGCACCACGGTGGCCCAGGCGATCAGCCCGAACACTGc                                                                              <  4:80388/149‑1 (MQ=255)                                                                   cAGGGCGATGGCGCCCCACAGCAAGGGCCAGGGGCCACGCAGGAAGCGTCGAAGGCCTTGGTGCTCGCTGGCAGGCAGTGCTTCAAGCGCGCCATGCCGGCGCTTCTCAAGCACCACGGTGGCCCAGGCGATCAGCCCGAACACTGCCa                                                                            <  5:322219/149‑1 (MQ=255)                                                                         gATGGCGCCCCACAGCAAGGGCCAGGGGCCACGCAGGAAGCGTCGAAGGCCTTGGTGCTCGCTGGCAGGCAGTGCTTCAAGCGCGCCATGCCGGCGCTTCTCAAGCACCACGGTGGCCCAGGCGATCAGCCCGAACACTGCCAGGCTTg                                                                      <  7:265280/149‑1 (MQ=255)                                                                           tGGCGCCCCACAGCAAGGGCCAGGGGCCACGCAGGAAGCGTCGAAGGCCTTGGTGCTCGCTGGCAGGCAGTGCTTCAAGCGCGCCATGCCGGCGCTTCTCAAGCACCACGGTGGCCCAGGCGATCAGCCCGAACACTGCCAGGCTTGcc                                                                    <  7:89643/149‑1 (MQ=255)                                                                                ccccACAGCAAGGGCCAGGGGCCACGCAGGAAGCGTCGAAGGCCTTGGTGCTCGCTGGCAGGCAGTGCTTCAAGCGCGCCATGCCGGCGCTTCTCAAGCACCACGGTGGCCCAGGCGATCAGCCCg                                                                                      <  1:283767/126‑1 (MQ=255)                                                                                ccccACAGCAAGGGCCAGGGGCCACGCAGGAAGCGTCGAAGGCCTTGGTGCTCGCTGGCAGGCAGTGCTTCAAGCGCGCCATGCCGGCGCTTCTCAAGCACCACGGTGGCCCAGGCGATCAGCCCg                                                                                      >  2:283767/1‑126 (MQ=255)                                                                                 cccACAGCAAGGGCCAGGGGCCACGCAGGAAGCGTCGAAGGCCTTGGTGCTCGCTGGCAGGCAGTGCTTCAAGCGCGCCATGCCGGCGCTTCTCAAGCACCACGGTGGCCCAGGCGATCAGCCCGAACACTGCCAGGCTTGCCAGCAcc                                                              >  2:38003/1‑149 (MQ=255)                                                                                  ccACAGCAAGGGCCAGGGGCCACGCAGGAAGCGTCGAAGGCCTTGGTGCTCGCTGGCAGGCAGTGCTTCAAGCGCGCCATGCCGGCGCTTCTCAAGCACCACGGTGGCCCAGGCGATCAGCCCGAACACTGCCAGGCTTGCCAGCACCg                                                             >  3:98693/1‑149 (MQ=255)                                                                                    acaGCAAGGGCCAGGGGCCACGCAGGAAGCGTCGAAGGCCTTGGTGCTCGCTGGCAGGCAGTGCTTCAAGCGCGCCATGCCGGCGCTTCTCAAGCACCACGGTGGCCCAGGCGATCAGCCCGAACACTGCCAGGCTTGCCAGCACCg                                                             >  7:125819/1‑147 (MQ=255)                                                                                           gggCCAGGGGCCACGCAGGAAGCGTCGAAGGCCTTGGTGCTCGCTGGCAGGCAGTGCTTCAAGCGCGCCATGCCGGCGCTTCTCAAGCACCACGGTGGCCCAGGCGATCAGCCCg                                                                                      >  6:176247/1‑115 (MQ=255)                                                                                           cggCCAGGGGCCACGCAGGAAGCGTCGAAGGCCTTGGTGCTCGCTGGCAGGCAGTGCTTCAAGCGCGCCATGCCGGCGCTTCTCAAGCACCACGGTGGCCCAGGCGATCAGCCCg                                                                                      <  5:176247/114‑1 (MQ=255)                                                                                             gCCAGGGGCCACGCAGGAAGCGTCGAAGGCCTTGGTGCTCGCTGGCAGGCAGTGCTTCAAGCGCGCCATGCCGGCGCTTCTCAAGCACCACGGTGGCCCAGGCGATCAGCCCGAACACTGCCAGGCTTGCCAGCACCGCAGGCCCTAt                                                   <  6:164528/148‑1 (MQ=255)                                                                                                     ccACGCAGGAAGCGTCGAAGGCCTTGGTGCTCGCTGGCAGGCAGTGCTTCAAGCGCGCCATGCCGGCGCTTCTCAAGCACCACGGTGGCCCAGGCGATCAGCCCGAACACTGCCAGGCTTGCCAGCACCGCAGGCCCTATCCCCCacac                                          <  1:38003/149‑1 (MQ=255)                                                                                                         gCAGGAAGCGTCGAAGGCCTTGGTGCTCGCTGGCAGGCAGTGCTTCAAGCGCGCCATGCCGGCGCTTCTCAAGCACCACGGTGGCCCAGGCGATCAGCCCGAACACTGCCAGGCTTGCCAGCACCGCAGGCCCTATCCCCCACACCTG‑c                                     >  2:220062/1‑149 (MQ=255)                                                                                                               aGCGTCGAAGGCCTTGGTGCTCGCTGGCAGGCAGTGCTTCAAGCGCGCCATGCCGGCGCTTCTCAAGCACCACGGTGGCCCAGGCGATCAGCCCGAACACTGCCAGGCTTGCCAGCACCGCAGGCCCTATCCCCCACACCTG‑CACGATc                               >  7:249453/1‑149 (MQ=255)                                                                                                                  gTCGAAGGCCTTGGTGCTCGCTGGCAGGCAGTGCTTCAAGCGCGCCATGCCGGCGCTTCTCAAGCACCACGGTGGCCCAGGCGATCAGCCCGAACACTGCCAGGCTTGCCAGCACCGCAGGCCCTATCCCCCACACCTG‑CACGATc                               >  7:38088/1‑146 (MQ=255)                                                                                                                  gTCGAAGGCCTTGGTGCTCGCTGGCAGGCAGTGCTTCAAGCGCGCCATGCCGGCGCTTCTCAAGCACCACGGTGGCCCAGGCGATCAGCCCGAACACTGCCAGGCTTGCCAGCACCGCAGGCCCTATCCCCCACACCTG‑CACGATCGa                             <  8:38088/148‑1 (MQ=255)                                                                                                                  gTCGAAGGCCTTGGTGCTCGCTGGCAGGCAGTGCTTCAAGCGCGCCATGCCGGCGCTTCTCAAGCACCACGGTGGCCCAGGCGATCAGCCCGAACACTGCCAGGCTTGCCAGCACCGCAGGCCCTATCCCCCACACCTG‑CACGATCGAg                            <  8:249453/149‑1 (MQ=255)                                                                                                                   tCGAAGGCCTTGGTGCTCGCTGGCAGGCAGTGCTTCAAGCGCGCCATGCCGGCGCTTCTCAAGCACCACGGTGGCCCAGGCGATCAGCCCGAACACTGCCAGGCTTGCCAGCACCGCAGGCCCTATCCCCCACACCTG‑CACGATCGAgg                           >  7:267358/1‑149 (MQ=255)                                                                                                                              ggTGCTCGCTGGCAGGCAGTGCTTCAAGCGCGCCATGCCGGCGCTTCTCAAGCACCACGGTGGCCCAGGCGATCAGCCCGAACACTGCCAGGCTTGCCAGCACCGCAGGCCCTATCCCCCACACCTG‑CACGATCGAGGTGGCCGGaa                  <  3:45572/147‑1 (MQ=255)                                                                                                                                tGCTCGCTGGCAGGCAGTGCTTCAAGCGCGCCATGCCGGCGCTTCTCAAGCACCACGGTGGCCCAGGCGAGCAGCCAGAACACTGCCAGGCTTGCCAGCACCGCAGGCCCTATCCCCCACACCTG‑CACGATCGAGGTGGCCGGAAGCGa              <  5:232141/149‑1 (MQ=255)                                                                                                                                 gCTCGCTGGCAGGCAGTGCTTCAAGCGCGCCATGCCGGCGCTTCTCAAGCACCACGGTGGCCCAGGCGATCAGCCCGAACACTGCCAGGCTTGCCAGCACCGCAGGCCCTATCCCCCACACCTG‑CACGATCGAGGTGGCCGGAAGCGAc             >  1:37992/1‑149 (MQ=255)                                                                                                                                   tCGCTGGCAGGCAGTGCTTCAAGCGCGCCATGCCGGCGCTTCTCAAGCACCACGGTGGCCCAGGCGATCAGCCCGAACACTGCCAGGCTTGCCAGCACCGCAGGCCCTATCCCACACACCAG‑CACGATCGAGGTGGCCGGAAGCGACgg           >  6:10738/1‑149 (MQ=255)                                                                                                                                         gcaggcagTGCTTCAAGCGCGCCATGCCGGCGCTTCTCAAGCACCACGGTGGCCCAGGCGATCAGCCCGAACACTGCCAGGCTTGCCAGCACCGCAGGCCCTATCCCCCACACCTG‑CACGATCGAGGTGGCCGGAAGCGACggcaag       <  8:125819/147‑1 (MQ=255)                                                                                                                                             gcagTGCTTCAAGCGCGCCATGCCGGCGCTTCTCAAGCACCACGGTGGCCCAGGCGATCAGCCCGAACACTGCCAGGCTTGCCAGCACCGCAGGCCCTATCCCCCACACCTGACACGATCGAGGTGGCCGGAAGCGACGGCAAGGCaaa  <  1:220062/149‑1 (MQ=255)                                                                                                                                               agTGCTTCAAGCGCGCCATGCCGGCGCTTCTCAAGCACCACGGTGGCCCAGGCGATCAGCCCGAACACTGCCAGGCTTGCCAGCACCGCAGGCCCTATCCCCCACACCTG‑CACGATCGAGGTGGCCGGaa                  <  2:126254/130‑1 (MQ=255)                                                                                                                                               agTGCTTCAAGCGCGCCATGCCGGCGCTTCTCAAGCACCACGGTGGCCCAGGCGATCAGCCCGAACACTGCCAGGCTTGCCAGCACCGCAGGCCCTATCCCCCACACCTG‑CACGATCGAGGTGGCCGGaa                  >  1:126254/1‑130 (MQ=255)                                                                                                                                                |                                                                                                                                                  GGCGAAAGCCGAGGTAATGCCCCAAGGCCGCCCCGCCAGCGCCAAGGTCGCGTAGTTCAGCAAGGCCAGGGCGATGGCGCCCCACAGCAAGGGCCAGGGGCCACGCAGGAAGCGTCGAAGGCCTTGGTGCTCGCTGGCAGGCAGTGCTTCAAGCGCGCCATGCCGGCGCTTCTCAAGCACCACGGTGGCCCAGGCGATCAGCCCGAACACTGCCAGGCTTGCCAGCACCGCAGGCCCTATCCCCCACACCTG‑CACGATCGAGGTGGCCGGAAGCGACGGCAAGGCAAA  >  NC_002947/4099226‑4099513

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.