New junction evidence | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_002947 | 4099369 = | 44 (0.850) | 3 (0.060) | 3/248 | NT | 6.5% | coding (649/1215 nt) | PP_3607 | membrane protein |
? | NC_002947 | 4099406 = | 44 (0.890) | coding (612/1215 nt) | PP_3607 | membrane protein |
GCCAGCGCCAAGGTCGCGTAGTTCAGCAAGGCCAGGGCGATGGCGCCCCACAGCAAGGGCCAGGGGCCACGCAGGAAGCGTCGAAGGCCTTGGTGCTCGCTGGCAGGCAGTGCTTCAAGCGCGCCATGCCGGCGCTTCTCAAGCACCACGGTGGCCCAGGCGATCAGCCCGAACACTGCCAGGCTTGCCAGCACCGCAGGCCCTATCCCCCACACCTG‑CACGATCGAGGTGGCCGGAAGCGACGGCAAGGCAAACCACCAATCGGCATGGTGGGTGGCGCTGACCGAGC > NC_002947/4099260‑4099548 | gtttgccttgccgtcgcttccggccacctcgatcgtgcaggtgtgggggatagggcctgcggtgctggcaagcctggcagtgttcgggctgatcgcctgggccaccgtgGTGCTTCAAGCGCGCCATGCCGGCGCTTCTCAAGcacca > 2:173869‑M1/110‑148 (MQ=255) gcgcCAAGGTCGCGTAGTTCAGCAAGGCCAGGGCGATGGCGCCCCACAGCAAGGGCCAGGGGCCACGCAGGAAGCGTCGAAGGCCTTGGTGCTCGCTGGCAGGCAGTGCTTCAAGCGCGCCATGCCGGCGCTTCTCAAGCACCACGGTg < 3:125598/149‑1 (MQ=255) cgcCAAGGTCGCGTAGTTCAGCAAGGCCAGGGCGATGGCGCCCCACAGCAAGGGCCAGGGGCCACGCAGGAAGCGTCGAAGGCCTTGGTGCTCGCTGGCAGGCAGTGCTTCAAGCGCGCCATGCCGGCGCTTCTCAAGCACCACGGTgg < 8:156025/149‑1 (MQ=255) gcCAAGGTCGCGTAGTTCAGCAAGGCCAGGGCGATGGCGCCCCACAGCAAGGGCCAGGGGCCACGCAGGAAGCGTCGAAGGCCTTGGTGCTCGCTGGCAGGCAGTGCTTCAAGCGCGCCATGCCGGCGCTTCTCAAGCACCACGGTGGc > 3:80388/1‑149 (MQ=255) aaGGTCGCGTAGTTCAGCAAGGCCAGGGCGATGGCGCCCCACAGCAAGGGCCAGGGGCCACGCAGGAAGCGTCGAAGGCCTTGGTGCTCGCTGGCAGGCAGTGCTTCAAGCGCGCCATGCCGGCGCTTCTCAAGCACCACGGTGGCCCa < 8:206306/149‑1 (MQ=255) gcgTAGTTCAGCAAGGCCAGGGCGATGGCGCCCCACAGCAAGGGCCAGGGGCCACGCAGGAAGCGTCGAAGGCCTTGGTGCTCGCTGGCAGGCAGTGCTTCAAGCGCGCCATGCCGGCGCTTCTCAAGCACCACGGTGGCCCAGGCGAt < 7:126470/149‑1 (MQ=255) ttCAGCAAGGCCAGGGCGATGGCGCCCCACAGCAAGGGCCAGGGGCCACGCAGGAAGCGTCGAAGGCCTTGGTGCTCGCTGGCAGGCAGTGCTTCAAGCGCGCCATGCCGGCGCTTCTCAAGCACCACGGTGGCCCAGGCGATCAGccc > 5:164528/1‑149 (MQ=255) ctcgatcgtgcaggtgtgggggatagggcctgcggtgctggcaagcctggcagtgttcgggctgatcgcctgggccaccgtgGTGCTTCAAGCGCGCCATGCCGGCGCTTCTCAAGcaccac < 8:42134‑M1/40‑1 (MQ=255) ctcgatcgtgcaggtgtgggggatagggcctgcggtgctggcaagcctggcagtgttcgggccgatcgcctgggccaccgtgGTGCTTCAAGCGCGCCATGCCGGCGCTTCTCAAGcaccac > 7:42134‑M1/83‑122 (MQ=255) acgCCAGGGCGATGGCGCCCCACAGCAAGGGCCAGGGGCCACGCAGGAAGCGTCGAAGGCCTTGGTGCTCGCTGGCAGGCAGTGCTTCAAGCGCGCCATGCCGGCGCTTCTCAAGCACCACGGTGGCCCAGGCGATCAGCCCGAACACt < 5:16188/147‑1 (MQ=255) aGGCCAGGGCGATGGCGCCCCACAGCAAGGGCCAGGGGCCACGCAGGAAGCGTCGAAGGCCTTGGTGCTCGCTGGCAGGCAGTGCTTCAAGCGCGCCATGCCGGCGCTTCTCAAGCACCACGGTGGCCCAGGCGATCAGCCCGAACACt > 8:89643/1‑149 (MQ=255) aGGCCAGGGCGATGGCGCCCCACAGCAAGGGCCAGGGGCCACGCAGGAAGCGTCGAAGGCCTTGGTGCTCGCTGGCAGGCAGTGCTTCAAGCGCGCCATGCCGGCGCTTCTCAAGCACCACGGTGGCCCAGGCGATCAGCCCGAACACt < 2:271588/149‑1 (MQ=255) gCCAGGGCGATGGCGCCCCACAGCAAGGGCCAGGGGCCACGCAGGAAGCGTCGAAGGCCTTGGTGCTCGCTGGCAGGCAGTGCTTCAAGCGCGCCATGCCGGCGCTTCTCAAGCACCACGGTGGCCCAGGCGATCAGCCCGAACACTGc < 4:80388/149‑1 (MQ=255) cAGGGCGATGGCGCCCCACAGCAAGGGCCAGGGGCCACGCAGGAAGCGTCGAAGGCCTTGGTGCTCGCTGGCAGGCAGTGCTTCAAGCGCGCCATGCCGGCGCTTCTCAAGCACCACGGTGGCCCAGGCGATCAGCCCGAACACTGCCa < 5:322219/149‑1 (MQ=255) gATGGCGCCCCACAGCAAGGGCCAGGGGCCACGCAGGAAGCGTCGAAGGCCTTGGTGCTCGCTGGCAGGCAGTGCTTCAAGCGCGCCATGCCGGCGCTTCTCAAGCACCACGGTGGCCCAGGCGATCAGCCCGAACACTGCCAGGCTTg < 7:265280/149‑1 (MQ=255) tGGCGCCCCACAGCAAGGGCCAGGGGCCACGCAGGAAGCGTCGAAGGCCTTGGTGCTCGCTGGCAGGCAGTGCTTCAAGCGCGCCATGCCGGCGCTTCTCAAGCACCACGGTGGCCCAGGCGATCAGCCCGAACACTGCCAGGCTTGcc < 7:89643/149‑1 (MQ=255) ccccACAGCAAGGGCCAGGGGCCACGCAGGAAGCGTCGAAGGCCTTGGTGCTCGCTGGCAGGCAGTGCTTCAAGCGCGCCATGCCGGCGCTTCTCAAGCACCACGGTGGCCCAGGCGATCAGCCCg > 2:283767/1‑126 (MQ=255) ccccACAGCAAGGGCCAGGGGCCACGCAGGAAGCGTCGAAGGCCTTGGTGCTCGCTGGCAGGCAGTGCTTCAAGCGCGCCATGCCGGCGCTTCTCAAGCACCACGGTGGCCCAGGCGATCAGCCCg < 1:283767/126‑1 (MQ=255) cccACAGCAAGGGCCAGGGGCCACGCAGGAAGCGTCGAAGGCCTTGGTGCTCGCTGGCAGGCAGTGCTTCAAGCGCGCCATGCCGGCGCTTCTCAAGCACCACGGTGGCCCAGGCGATCAGCCCGAACACTGCCAGGCTTGCCAGCAcc > 2:38003/1‑149 (MQ=255) ccACAGCAAGGGCCAGGGGCCACGCAGGAAGCGTCGAAGGCCTTGGTGCTCGCTGGCAGGCAGTGCTTCAAGCGCGCCATGCCGGCGCTTCTCAAGCACCACGGTGGCCCAGGCGATCAGCCCGAACACTGCCAGGCTTGCCAGCACCg > 3:98693/1‑149 (MQ=255) acaGCAAGGGCCAGGGGCCACGCAGGAAGCGTCGAAGGCCTTGGTGCTCGCTGGCAGGCAGTGCTTCAAGCGCGCCATGCCGGCGCTTCTCAAGCACCACGGTGGCCCAGGCGATCAGCCCGAACACTGCCAGGCTTGCCAGCACCg > 7:125819/1‑147 (MQ=255) gggCCAGGGGCCACGCAGGAAGCGTCGAAGGCCTTGGTGCTCGCTGGCAGGCAGTGCTTCAAGCGCGCCATGCCGGCGCTTCTCAAGCACCACGGTGGCCCAGGCGATCAGCCCg > 6:176247/1‑115 (MQ=255) cggCCAGGGGCCACGCAGGAAGCGTCGAAGGCCTTGGTGCTCGCTGGCAGGCAGTGCTTCAAGCGCGCCATGCCGGCGCTTCTCAAGCACCACGGTGGCCCAGGCGATCAGCCCg < 5:176247/114‑1 (MQ=255) gCCAGGGGCCACGCAGGAAGCGTCGAAGGCCTTGGTGCTCGCTGGCAGGCAGTGCTTCAAGCGCGCCATGCCGGCGCTTCTCAAGCACCACGGTGGCCCAGGCGATCAGCCCGAACACTGCCAGGCTTGCCAGCACCGCAGGCCCTAt < 6:164528/148‑1 (MQ=255) ccACGCAGGAAGCGTCGAAGGCCTTGGTGCTCGCTGGCAGGCAGTGCTTCAAGCGCGCCATGCCGGCGCTTCTCAAGCACCACGGTGGCCCAGGCGATCAGCCCGAACACTGCCAGGCTTGCCAGCACCGCAGGCCCTATCCCCCacac < 1:38003/149‑1 (MQ=255) gCAGGAAGCGTCGAAGGCCTTGGTGCTCGCTGGCAGGCAGTGCTTCAAGCGCGCCATGCCGGCGCTTCTCAAGCACCACGGTGGCCCAGGCGATCAGCCCGAACACTGCCAGGCTTGCCAGCACCGCAGGCCCTATCCCCCACACCTG‑c > 2:220062/1‑149 (MQ=255) aGCGTCGAAGGCCTTGGTGCTCGCTGGCAGGCAGTGCTTCAAGCGCGCCATGCCGGCGCTTCTCAAGCACCACGGTGGCCCAGGCGATCAGCCCGAACACTGCCAGGCTTGCCAGCACCGCAGGCCCTATCCCCCACACCTG‑CACGATc > 7:249453/1‑149 (MQ=255) gTCGAAGGCCTTGGTGCTCGCTGGCAGGCAGTGCTTCAAGCGCGCCATGCCGGCGCTTCTCAAGCACCACGGTGGCCCAGGCGATCAGCCCGAACACTGCCAGGCTTGCCAGCACCGCAGGCCCTATCCCCCACACCTG‑CACGATc > 7:38088/1‑146 (MQ=255) gTCGAAGGCCTTGGTGCTCGCTGGCAGGCAGTGCTTCAAGCGCGCCATGCCGGCGCTTCTCAAGCACCACGGTGGCCCAGGCGATCAGCCCGAACACTGCCAGGCTTGCCAGCACCGCAGGCCCTATCCCCCACACCTG‑CACGATCGa < 8:38088/148‑1 (MQ=255) gTCGAAGGCCTTGGTGCTCGCTGGCAGGCAGTGCTTCAAGCGCGCCATGCCGGCGCTTCTCAAGCACCACGGTGGCCCAGGCGATCAGCCCGAACACTGCCAGGCTTGCCAGCACCGCAGGCCCTATCCCCCACACCTG‑CACGATCGAg < 8:249453/149‑1 (MQ=255) tCGAAGGCCTTGGTGCTCGCTGGCAGGCAGTGCTTCAAGCGCGCCATGCCGGCGCTTCTCAAGCACCACGGTGGCCCAGGCGATCAGCCCGAACACTGCCAGGCTTGCCAGCACCGCAGGCCCTATCCCCCACACCTG‑CACGATCGAgg > 7:267358/1‑149 (MQ=255) ggTGCTCGCTGGCAGGCAGTGCTTCAAGCGCGCCATGCCGGCGCTTCTCAAGCACCACGGTGGCCCAGGCGATCAGCCCGAACACTGCCAGGCTTGCCAGCACCGCAGGCCCTATCCCCCACACCTG‑CACGATCGAGGTGGCCGGaa < 3:45572/147‑1 (MQ=255) tGCTCGCTGGCAGGCAGTGCTTCAAGCGCGCCATGCCGGCGCTTCTCAAGCACCACGGTGGCCCAGGCGAGCAGCCAGAACACTGCCAGGCTTGCCAGCACCGCAGGCCCTATCCCCCACACCTG‑CACGATCGAGGTGGCCGGAAGCGa < 5:232141/149‑1 (MQ=255) gCTCGCTGGCAGGCAGTGCTTCAAGCGCGCCATGCCGGCGCTTCTCAAGCACCACGGTGGCCCAGGCGATCAGCCCGAACACTGCCAGGCTTGCCAGCACCGCAGGCCCTATCCCCCACACCTG‑CACGATCGAGGTGGCCGGAAGCGAc > 1:37992/1‑149 (MQ=255) tCGCTGGCAGGCAGTGCTTCAAGCGCGCCATGCCGGCGCTTCTCAAGCACCACGGTGGCCCAGGCGATCAGCCCGAACACTGCCAGGCTTGCCAGCACCGCAGGCCCTATCCCACACACCAG‑CACGATCGAGGTGGCCGGAAGCGACgg > 6:10738/1‑149 (MQ=255) gcaggcagTGCTTCAAGCGCGCCATGCCGGCGCTTCTCAAGCACCACGGTGGCCCAGGCGATCAGCCCGAACACTGCCAGGCTTGCCAGCACCGCAGGCCCTATCCCCCACACCTG‑CACGATCGAGGTGGCCGGAAGCGACggcaag < 8:125819/147‑1 (MQ=255) gtggtgcttgagaagcgccggcatggcgcgcttgaagcacCACGGTGGCCCAGGCGATCGGCCCGAACACTGCCAGGCTTGCCAGCACCGCAGGCCCTATCCCCCACACCTG‑CACGATCGAg > 7:42134‑M2/41‑122 (MQ=255) gtggtgcttgagaagcgccggcatggcgcgcttgaagcacCACGGTGGCCCAGGCGATCAGCCCGAACACTGCCAGGCTTGCCAGCACCGCAGGCCCTATCCCCCACACCTG‑CACGATCGAg < 8:42134‑M2/82‑1 (MQ=255) gcagTGCTTCAAGCGCGCCATGCCGGCGCTTCTCAAGCACCACGGTGGCCCAGGCGATCAGCCCGAACACTGCCAGGCTTGCCAGCACCGCAGGCCCTATCCCCCACACCTGACACGATCGAGGTGGCCGGAAGCGACGGCAAGGCaaa < 1:220062/149‑1 (MQ=255) tggtgcttgagaagcgccggcatggcgcgcttgaagcacCACGGTGGCCCAGGCGATCAGCCCGAACACTGCCAGGCTTGCCAGCACCGCAGGCCCTATCCCCCACACCTG‑CACGATCGAGGTGGCCGGAAGCGACGGCAAGGCAAac > 2:173869‑M2/40‑148 (MQ=255) agTGCTTCAAGCGCGCCATGCCGGCGCTTCTCAAGCACCACGGTGGCCCAGGCGATCAGCCCGAACACTGCCAGGCTTGCCAGCACCGCAGGCCCTATCCCCCACACCTG‑CACGATCGAGGTGGCCGGaa > 1:126254/1‑130 (MQ=255) agTGCTTCAAGCGCGCCATGCCGGCGCTTCTCAAGCACCACGGTGGCCCAGGCGATCAGCCCGAACACTGCCAGGCTTGCCAGCACCGCAGGCCCTATCCCCCACACCTG‑CACGATCGAGGTGGCCGGaa < 2:126254/130‑1 (MQ=255) cgcgcCATGCCGGCGCTTCTCAAGCACCACGGTGGCCCAGGCGATCAGCCCGAACACTGCCAGGCTTGCCAGCACCGCAGGCCCTATCCCCCACACCTG‑CACGATCGAGGTGGCCGGaa > 6:226189/1‑119 (MQ=255) cgcgcCATGCCGGCGCTTCTCAAGCACCACGGTGGCCCAGGCGATCAGCCCGAACACTGCCAGGCTTGCCAGCACCGCAGGCCCTATCCCCCACACCTG‑CACGATCGAGGTGGCCGGaa < 5:226189/119‑1 (MQ=255) cgcgcCATGCCGGCGCTTCTCAAGCACCACGGTGGCCCAGGCGATCAGCCCGAACACTGCCAGGCTTGCCAGCACCGCAGGCCCTATCCCCCACACCTG‑CACGATCGAGGTGGCCGGAAGCGACGGCAAGGCAAACCACCAATCg < 6:152049/145‑1 (MQ=255) cgcgcCATGCCGGCGCTTCTCAAGCACCACGGTGGCCCAGGCGATCAGCCCGAACACTGCCAGGCTTGCCAGCACCGCAGGCCCTATCCCCCACACCTG‑CACGATCGAGGTGGCCGGAAGCGACGGCAAGGCAAACCACCAATCg > 5:152049/1‑145 (MQ=255) gcgcCATGCCGGCGCTTCTCAAGCACCACGGTGGCCCAGGCGATCAGCCCGAACACTGCCAGGCTTGCCAGCACCGCAGGCCCTATCCCCCACACCTG‑CACGGTCGAGGTGGCCGGAAGCGACGGCAAGGCAAACCACCAATCGGCAtg > 7:222547/1‑149 (MQ=255) gcCATGCCGGCGCTTCTCAAGCACCACGGTGGCCCAGGCGATCAGCCCGAACACTGCCAGGCTTGCCAGCACCGCAGGCCCTATCCCCCACACCTG‑CACGATCGAGGTGGCCGGAAGCGACGGCAAGGCAAACCACCAATCGGCAtggt > 4:161748/1‑149 (MQ=255) aTGCCGGCGCTTCTCAAGCACCACGGTGGCCCAGGCGATCAGCCCGAACACTGCCAGGCTTGCCAGCACCGCAGGCCCTATCCCCCACACCTG‑CACGATCGAGGTGGCCGGAAGCGACGGCAAGGCAAACCACCAATCGGCATggtggg < 4:98693/149‑1 (MQ=255) tGCCGGCGCTTCTCAAGCACCACGGTGGCCCAGGCGATCAGCCCGAACACTGCCAGGCTTGCCAGCACCGCAGGCCCTATCCCCCACACCTG‑CACGATCGAGGTGGCCGGAAGCGACGGCAAGGCAAACCACCAATCGGCATggtgggt > 1:126122/1‑149 (MQ=255) ttCTCAAGCACCACGGTGGCCCAGGCGATCAGCCCGAACACTGCCAGGCTTGCCAGCACCGCAGGCCCTATCCCCCACACCTG‑CACGATCGAGGTGGCCGGAAGCGACGGCAAGGCAAACCACCAATCGGCATGGTGGGTGGCGCTGAc > 5:35131/1‑149 (MQ=255) gcttgaagcacCACGGTGGCCCAGGCGATCAGCCCGAACACTGCCAGGCTTGCCAGCACCGCAGGCCCTATCCCCCACACCTG‑CACGATCGAGGTGGCCGGAAGCGACGGCAAGGCAAACCACCAATCGGCATGGTGGGTGGCGCTGAc < 1:173869‑M2/138‑1 (MQ=255) tcAAGCACCACGGTGGCCCAGGCGATCAGCCCGAACACTGCCAGGCTTGCCAGCACCGCAGGCCCTATCCCCCACACCTG‑CACGATCGAGGTGGCCGGAAGCGACgg < 7:149982/107‑1 (MQ=255) tcAAGCACCACGGTGGCCCAGGCGATCAGCCCGAACACTGCCAGGCTTGCCAGCACCGCAGGCCCTATCCCCCACACCTG‑CACGATCGAGGTGGCCGGAAGCGACgg > 8:149982/1‑107 (MQ=255) tcAAGCACCACGGTGGCCCAGGCGATCAGCCCGAACACTGCCAGGCTTGCCAGCACCGCAGGCCCTATCCCCCACACCTG‑CACGATCGAGGTGGCCGGAAGCGACGGCAAGGCAAACCACCAATCGGCATGGTGGGTGGCGCTGAcc > 5:210160/1‑147 (MQ=255) aagcacCACGGTGGCCCAGGCGATCAGCCCGAACACTGCCAGGCTTGCCAGCACCGCAGGCCCTATCCCCCACACCTG‑CACGATCGAGGTGGCCGGAAGCGACGGCAAGGCAAACCACCAATCGGCATGGTGGGTGgc < 4:127149‑M2/132‑1 (MQ=255) aagcacCACGGTGGCCCAGGCGATCAGCCCGAACACTGCCAGGCTTGCCAGCACCGCAGGCCCTATCCCCCACACCTG‑CACGATCGAGGTGGCCGGAAGCGACGGCAAGGCAAACCACCAATCGGCATGGTGGGTGgc > 3:127149‑M2/7‑138 (MQ=255) aagcacCACGGTGGCCCAGGCGATCAGCCCGAACACTGCCAGGCTTGCCAGCACCGCAGGCCCTATCCCCCACACCTG‑CACGATCGAGGTGGCCGGAAGCGACGGCAAGGCAAACCACCAATCGGCATGGTGGGTGGCGCTGACCGAGc > 6:36039‑M2/7‑149 (MQ=255) acCACGGTGGCCCAGGCGATCAGCCCGAACACTGCCAGGCTTGCCAGCACCGCAGGCCCTATCCCCCACACCTG‑CACGATCGAGGTGGCCGGAAGCGACGGCAAGGCAAACCACCAATCGGCATGGTGGGTGGCGCTGAc < 5:234550‑M2/138‑1 (MQ=255) acCACGGTGGCCCAGGCGATCAGCCCGAACACTGCCAGGCTTGCCAGCACCGCAGGCCCTATCCCCCACACCTG‑CACGATCGAGGTGGCCGGAAGCGACGGCAAGGCAAACCACCAATCGGCATGGTGGGTGGCGCTGAc > 6:234550‑M2/3‑140 (MQ=255) | GCCAGCGCCAAGGTCGCGTAGTTCAGCAAGGCCAGGGCGATGGCGCCCCACAGCAAGGGCCAGGGGCCACGCAGGAAGCGTCGAAGGCCTTGGTGCTCGCTGGCAGGCAGTGCTTCAAGCGCGCCATGCCGGCGCTTCTCAAGCACCACGGTGGCCCAGGCGATCAGCCCGAACACTGCCAGGCTTGCCAGCACCGCAGGCCCTATCCCCCACACCTG‑CACGATCGAGGTGGCCGGAAGCGACGGCAAGGCAAACCACCAATCGGCATGGTGGGTGGCGCTGACCGAGC > NC_002947/4099260‑4099548 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |