New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 4136428	46 (0.890)	4 (0.080)	4/252	NT	8.5%	coding (637/921 nt)	PP_3640	AraC family transcriptional regulator
	?	NC_002947	= 4136464	42 (0.840)					coding (673/921 nt)	PP_3640	AraC family transcriptional regulator

AACGGCTGACGCACTTGTTGTTCCTGTACGTGCTGCGCCAGCAGGTGCACGCAGGGCAATCGCTGGGCGGGCTGGTCGCCCTCGCCCGCCAGCCGGCATTTGCCGGATTGCTTGAGCAATTGATCGAGCATCCGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/4136294‑4136428 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccggTGCAAGCGGCCATGTTCTCCATGGTCCAGGTTTGCCCCGGATGCTCGATCAATTGCTCAAGCAATCCGGCAAATGCCGGCTGGCGGGCGAGGGCGACCAGCCCGCCCAGCGATTGCCCTGCGTGCACCTGCTGGCGCAGCACGTACAG  <  NC_002947/4136464‑4136317                                                                                                                                                                                                                                                                                             AACGGCTGACGCACTTGTTGTTCCTGTACGTGCTGCGCCAGCAGGTGCACGCAGGGCAATCGCTGGGCGGGCTGGTCGCCCTCGCCCGCCAGCCGGCATTTGCCGGATTGCTTGAGCAATTGATCGAGCATCCGGTGCAAGCGGCCATG                                                                                                                                        >  5:119222/1‑149                             CGTGCTGCGCCAGCAGGTGCACGCAGGGCAATCGCTGGGCGGGCTGGTCGCCCTCGCCCGCCAGCCGGCATTTGCCGGATTGCTTGAGCAATTGATCGAGCATCCGGTGCAAGCGGCCATGTTCTCCATGGTCCAGGTTTGCCCCGGAT                                                                                                            <  6:119222/149‑1                                                                                CCTCGCACGCCAGCCGGCATTTGCCGGATTGCTTGAGCAATTGATCGAGTATCCGGTGCAAGCGGCCATGTTCTCCATGGTCCAGGTTTGCCCCGGA                                                                                                             <  1:73656/97‑1                                                                                CCTCGCACGCCAGCCGGCATTTGCCGGATTGCTTGAGCAATTGATCGAGCATCCGGTGCAAGCGGCCATGTTCTCCATGGTCCAGGTTTGCCCCGGA                                                                                                             >  2:73656/1‑97                                                                                                                                       GTGCAAGCGGCCATGTTCTCCATGGTCCAGGTTTGCCCCGGATGCTCGATCAATTGCTCAAGCAATCCGGCAAATGCCGGCTGGCGGGCGAGGGCGACCAGCCCGCCCAGCGATTGCCCTGCGTGCACCTGCTGGCGCAGCACGTACAG  <  6:202622/149‑1                                                                                                                                                                                                                                                                                             AACGGCTGACGCACTTGTTGTTCCTGTACGTGCTGCGCCAGCAGGTGCACGCAGGGCAATCGCTGGGCGGGCTGGTCGCCCTCGCCCGCCAGCCGGCATTTGCCGGATTGCTTGAGCAATTGATCGAGCATCCGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/4136294‑4136428 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccggTGCAAGCGGCCATGTTCTCCATGGTCCAGGTTTGCCCCGGATGCTCGATCAATTGCTCAAGCAATCCGGCAAATGCCGGCTGGCGGGCGAGGGCGACCAGCCCGCCCAGCGATTGCCCTGCGTGCACCTGCTGGCGCAGCACGTACAG  <  NC_002947/4136464‑4136317

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.