New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 4136428	46 (0.890)	4 (0.080)	4/252	NT	8.5%	coding (637/921 nt)	PP_3640	AraC family transcriptional regulator
	?	NC_002947	= 4136464	42 (0.840)					coding (673/921 nt)	PP_3640	AraC family transcriptional regulator

CCTGTACGTGCTGCGCCAGCAGGTGCACGCAGGGCAATCGCTGGGCGGGCTGGTCGCCCTCGCCCGCCAGCCGGCATTTGCCGGATTGCTTGAGCAATTGATCGAGCATCCGGGGCAAACCTGGACCATGGAGAACATGGCCGCTTGCACCGGGTTGTCACGGTCGGCTTTTTTCAAGCGTTTCAGCGAGCTGGCCGGGCAGTCACCGGGACAAGTGCTGCTGGCGCTGCGCATGCGCCATGCCAGCCAGTTGCTGCAGGCGGGGCATACCGTTGAGCAGGTAGGCGCGCAGGTGGG  >  NC_002947/4136316‑4136612                                                                                                                                                     |                                                                                                                                                     ccTGTACGTGCTGCGCCAGCAGGTGCACGCAGGGCAATCGCTGGGCGGGCTGGTCGCCCTCGCCCGCCAGCCGGCATTTGCCGGATTGCTTGAGCAATTGATCGAGCATCCGGGGCAAACCTGGACCATGGAGAACATGGCCGCTTGCa                                                                                                                                                      >  8:242393/1‑149 (MQ=255)  cTGTACGTGCTGCGCCAGCAGGTGCACGCAGGGCAATCGCTGGGCGGGCTGGTCGCCCTCGCCCGCCAGCCGGCATTTGCCGGATTGCTTGAGCAATTGATCGAGCATCCGGGGCAAACCTGGACCATGGAGAACATGGCCGCTTGCAc                                                                                                                                                     <  6:202622‑M2/149‑2 (MQ=255)         tgctgcGCCAGCAGGTGCACGCAGGGCAATCGCTGGGCGGGCTGGTCGCCCTCGCCCGCCAGCCGGCATTTGCCGGATTGCTTGAGCAATTGATCGAGCATCCGGGGCAAACCTGGACCATGGAGAACATGGCCGCTTGCACCGGGTTg                                                                                                                                              <  8:226914/149‑1 (MQ=255)              cgcCAGCAGGTGCACGCAGGGCAATCGCTGGGCGGGCTGGTCGCCCTCGCCCGCCAGCCGGCATTTGCCGGATTGCTTGAGCAATTGATCGAGCATCCGGGGCAAACCTGGACCATGGAGAACATGGCCGCTTGCACCGGGTTGTCACg                                                                                                                                         >  8:280890/1‑149 (MQ=255)              cgcCAGCAGGTGCACGCAGGGCAATCGCTGGGCGGGCTGGTCGCCCTCGCCCGCCAGCCGGCATTTGCCGGATTGCTTGAGCAATTGATCGAGCATCCGGGGCAAACCTGGACCATGGAGAACATGGCCGCTTGCACCGGGTTGTCACg                                                                                                                                         <  2:294925/149‑1 (MQ=255)              cgcCAGCAGGTGCACGCAGGGCAATCGCTGGGCGGGCTGGTCGCCCTCGCCCGCCAGCCGGCATTTGCCGGATTGCTTGAGCAATTGATCGAGCATCCGGGGCAAACCTGGACCATGGAGAACATGGCCGCTTGCACCGGGTTGTCACg                                                                                                                                         <  4:172911/149‑1 (MQ=255)               gcCAGCAGGTGCACGCAGGGCAATCGCTGGGCGGGCTGGTCGCCCTCGCCCGCCAGCCGGCATTTGCCGGATTGCTTGAGCAATTGATCGAGCATCCGGGGCAAACCTGGACCATGGAGAACATGGCCGCTTGCACCGGGTTGTCACgg                                                                                                                                        <  7:242393/149‑1 (MQ=255)                          cACGCAGGGCAATCGCTGGGCGGGCTGGTCGCCCTCGCCCGCCAGCCGGCATTTGCCGGATTGCTTGAGCAATTGATCGAGCATCCGGGGCAAACCTGGACCATGGAGAACATGGCCGCTTGCACCGGGTTGTCACGGTCGGCtttttt                                                                                                                             >  5:290549/1‑149 (MQ=255)                            cGCAGGGCAATCGCTGGGCGGGCTGGTCGCCCTCGCCCGCCAGCCGGCATTTGCCGGATTGCTTGAGCAATTGATCGAGCATCCGGGGCAAACCTGGACCATGGAGAACATGGCCGCTTGCACCGGGTTGTCACGGTCGGCTTTTTTCa                                                                                                                           <  7:280890/149‑1 (MQ=255)                             gCAGGGCAATCGCTGGGCGGGCTGGTCGCCCTCGCCCGCCAGCCGGCATTTGCCGGATTGCTTGAGCAATTGATCGAGCATCCGGGGCAAACCTGGACCATGGAGAACATGGCCGCTTGCACCGGGTTGTCACGGTCGGCTTTTTTc                                                                                                                            >  5:129660/1‑147 (MQ=255)                             gCAGGGCAATCGCTGGGCGGGCGGGTCGCCCTCGCCCGCCAGCCGGCATTTGCCGGATTGCTTGAGCAATTGATCGAGCATCCGGGGCAAACCTGGACCATGGAGAACATGGCCGCTTGCACCGGGTTGTCACGGTCGGCTTTTTTCaa                                                                                                                          <  5:103140/149‑1 (MQ=255)                                        gCTGGGCGGGCTGGTCGCCCTCGCCCGCCAGCCGGCATTTGCCGGATTGCTTGAGCAATTGATCGAGCATCCGGGGCAAACCTGGACCATGGAGAACATGGCCGCTTGCACCGGGTTGTCACGGTCGGCTTTTTTCAAGCGTTTCAGc                                                                                                                <  3:166467/148‑1 (MQ=255)                                                  cTGGTCGCCCTCGCCCGCCAGCCGGCATTTGCCGGATTGCTTGAGCAATTGATCGAGCATCCGGGGCAAACCTGGACCATGGAGAACATGGCCGCTTGCACCGGGTTGTCACGGTCGGCTTTTTTCAAGCGTTTCAGCGAGCTGGCCgg                                                                                                     <  5:202622/149‑1 (MQ=255)                                                         ccctcgcccGCCAGCCGGCATTTGCCGGATTGCTTGAGCAATTGATCGAGCATCCGGGGCAAACCTGGACCATGGAGAACATGGCCGCTTGCACCGGGTTGTCACGGTCGGCTTTTTTCAAGCGTTTCAGCGAGCTGGCCGGGCAGTCa                                                                                              >  3:203656/1‑149 (MQ=255)                                                          cctcgcccGCCAGCCGGCATTTGCCGGATTGCTTGAGCAATTGATCGAGCATCCTGGGCAAACCTGGACCATGGAGAACATGGCCGCTTGCACCGGGTTGTCACGGTCGGCTTTTTTCAAGCGTTTCAGCg                                                                                                               <  1:160478/131‑1 (MQ=255)                                                          cctcgcccGCCAGCCGGCATTTGCCGGATTGCTTGAGCAATTGATCGAGCATCCTGGGCAAACCTGGACCATGGAGAACATGGCCGCTTGCACCGGGTTGTCACGGTCGGCTTTTTTCAAGCGTTTCAGCg                                                                                                               >  2:160478/1‑131 (MQ=255)                                                          cctcgcccGCCAGCCGGCATTTGCCGGATTGCTTGAGCAATTGATCGAGCATCCGGGGCAAACCTGGACCATGGAGAACATGGCCGCTTGCACCGGGTTGTCACGGTCGGCTTTTTTCAAGCGTTTCAGCGAGCTGGCCGGGCAGTCAc                                                                                             >  6:146743/1‑149 (MQ=255)                                                             cgcccgccAGCCGGCATTTGCCGGATTGCTTGAGCAATTGATCGAGCATCCGGGGCAAACCTGGACCATGGAGAACATGGCCGCTTGCACCGGGTTGTCACGGTCGGCTTTTTTCAAGCGTTTCAGCGAGCTGGCCGGGCAGTCACCgg                                                                                          <  4:203656/149‑1 (MQ=255)                                                                ccgccAGCCGGCATTTGCCGGATTGCTTGAGCAATTGATCGAGCATCCGGGGCAAACCTGGACCATGGAGAACATGGCCGCTTGCACCGGGTTGTCACGGTCGGCTTTTTTCAAGCGTTTCAGCGAGCTGGCCGGGCAGTCACCGGGa                                                                                        >  6:273439/1‑148 (MQ=255)                                                                     aGCCGGCATTTGCCGGATTGCTTGAGCAATTGATCGAGCATCCGGGGCAAACCTGGACCATGGAGAACATGGCCGCTTGCACCGGGTTGTCACGGTCGGCTTTTTTCAAGCGTTTCAGCGAGCTGGCCGGGCAGTCACCGGGACAAGtg                                                                                  <  5:146743/149‑1 (MQ=255)                                                                        cGGCATTTGCCGGATTGCTTGAGCAATTGATCGAGCATCCGGGGCAAACCTGGACCATGGAGAACATGGCCGCTTGCACCGGGTTGTCACGGTCGGCTTTTTTCAAGCGTTTCAGCGAGCTGGCCGGGCAGTCACCGGGACAAGtgctg                                                                               >  3:37557/1‑149 (MQ=255)                                                                                 ccGGATTGCTTGAGCAATTGATCGAGCATCCGGGGCAAACCTGGACCATGGAGAACATGGCCGCTTGCACCGGGTTGTCACGGTCGGCTTTTTTCAAGCGTTTCAGCGAGCTGGCCGGGCAGTCACCGGGACAAGTGCTGCTGGCGCt                                                                       <  4:37557/148‑1 (MQ=255)                                                                                  cGGATTGCTTGAGCAATTGATCGAGCATCCGGGGCAAACCTGGACCATGGAGAACATGGCCGCTTGCACCGGGTTGTCACGGTCGGCTTTTTTCAAGCGTTTCa                                                                                                                  <  4:170714/104‑1 (MQ=255)                                                                                  cGGATTGCTTGAGCAATTGATCGAGCATCCGGGGCAAACCTGGACCATGGAGAACATGGCCGCTTGCACCGGGTTGTCACGGTCGGCTTTTATCAAGCGTTTCAGCGAGCTGGCCGGGCAGTCACCGGGACAAGTGCTGCTGGCGCTgc                                                                     <  5:14463/149‑1 (MQ=255)                                                                                         cTTGAGCAATTGATCGAGCATCCGGGGCAAACCTGGACCATGGAGAACATGGCCGCTTGCACCGGGTTGTCACGGTCGGCTTTTTTCAAGCGTTTCAGCGAGCTGGCCGGGCAGTCACCGGGACAAGTGCTGCTGGCGCTGCGCATgc                                                               <  6:312855/148‑1 (MQ=255)                                                                                          ttGAGCAATTGATCGAGCATCCGGGGCAAACCTGGACCATGGAGAACATGGCCGCTTGCACCGGGTTGTCACGGTCGGCTTTTTTCAAGCGTTTCAGCGAGCTGGCCGGGCAGTCACCGGGACAAGTGCTGCTGGCGCTGCGCATgcgc                                                             >  7:186535/1‑149 (MQ=255)                                                                                             aGCAATTGATCGAGCATCCGGGGCAAACCTGGACCATGGAGAACATGGCCGCTTGCACCGGGTTGTCACGGTCGGCTTTTTTCAAGCGTTTCAGCGAGCTGGCCGGGCAGTCACCGGGACAAGTgctgct                                                                             <  7:74335/130‑1 (MQ=255)                                                                                             aGCAATTGATCGAGCATCCGGGGCAAACCTGGACCATGGAGAACATGGCCGCTTGCACCGGGTTGTCACGGTCGGCTTTTTTCAAGCGTTTCAGCGAGCTGGCCGGGCAGTCACCGGGACAAGTgctgct                                                                             >  8:74335/1‑130 (MQ=255)                                                                                                aaTTGATCGAGCATCCGGGGCAAACCTGGACCATGGAGAAAATGGCCGCTTGCACCGGGTTCTCACGGTCGGCTTTTTTCAAGCGta                                                                                                                     >  5:162059/1‑86 (MQ=255)                                                                                                      tCGAGCATCCGGGGCAAACCTGGACCATGGAGAACATGGCCGCTTGCACCGGGTTGTCACGGTCGGCTTTTTTCAAGCGTTTCAGCGAGCTGGCCGGGCAGTCACCGGGACAAGTGCTGCTGGCGCTGCGCATGCGCCATGccagccag                                                 >  4:195673/1‑149 (MQ=255)                                                                                                           cATCCGGGGCAAACCTGGACCATGGAGAACATGGCCGCTTGCACCGGGTTGTCACGGTCGGCTTTTTTCAAGCGTTTCAGCGAGCTGGCCGGGCAGTCACCGGGACAAGtgctg                                                                               <  2:90537/114‑1 (MQ=255)                                                                                                           cATCCGGGGCAAACCTGGACCATGGAGAACATGGCCGCTTGCACCGGGTTGTCACGGTCGGCTTTTTTCAAGCGTTTCAGCGAGCTGGCCGGGCAGTCACCGGGACAAGtgctg                                                                               >  1:90537/1‑114 (MQ=255)                                                                                                           cATCCGGGGCAAACCTGGACCATGGAGAACATGGCCGCTTGCACCGGGTTGTCACGGTCGGCTTTTTTCAAGCGTTTCAGCGAGCTGGCCGGGCAGTCACCGGGACAAGTGCTGCTGGCGCTGCGCATGCGCCATGCCAGCCAGTtgct                                            <  4:319716/149‑1 (MQ=255)                                                                                                            aTCCGGGGCAAACCTGGACCATGGAGAACATGGCCGCTTGCAccggatgctcgatcaattgctcaagcaatccggcaaatgccggctggcgggcgagggcgaccagcccgcccagcgattgccctgcgtgcacctgctggcgcagcacg                                           <  6:119222‑M2/149‑108 (MQ=255)                                                                                                            aTCCGGGGCAAACCTGGACCATGGAGAACATGGCCGCTTGCACCGGGTTGTCACGGTCGGCTTTTTTCAAGCGTTTCAGCGAGCTGGCCGGGCAGTCACCGGGACAAGTGCTGCTGGCGCTGCGCATGCGCCATgcca                                                      >  5:210826/1‑138 (MQ=255)                                                                                                            aTCCGGGGCAAACCTGGACCATGGAGAACATGGCCGCTTGCACCGGGTTGTCACGGTCGGCTTTTTTCAAGCGTTTCAGCGAGCTGGCCGGGCAGTCACCGGGACAAGTGCTGCTGGCGCTGCGCATGCGCCATgcca                                                      <  6:210826/138‑1 (MQ=255)                                                                                                             tCCGGGGCAAACCTGGACCATGGAGAACATGGCCGCTTGCAccggatgctcgatcaattgctcaagcaatccggcaaatgccggctggcgtgcgagg                                                                                              >  2:73656‑M2/1‑41 (MQ=255)                                                                                                             tCCGGGGCAAACCTGGACCATGGAGAACATGGCCGCTTGCAccggatactcgatcaattgctcaagcaatccggcaaatgccggctggcgtgcgagg                                                                                              <  1:73656‑M2/97‑57 (MQ=255)                                                                                                             tCCGGGGCAAACCTGGACCATGGAGAACATGGCCGCTTGCACCGGGTTGTCACGGTCGGCTTTTTTCAAGCGTTTCAGCGAGCTGGCCGGGCAGTCACCGGGACAAGTGCTGCTGGCGCTGCGCATGCGCCATGCCAGCCAGTtgctg                                           >  8:146576/1‑148 (MQ=255)                                                                                                                 gggCAAACCTGGACCATGGAGAACATGGCCGCTTGCACCGGGTTGTCACGGTCGGCTTTTTTCAAGCGTTTCAGCGAGCTGGCCGGGCAGTCACCGGGACAAGTGCTGCTGGCGCTGCGCATGCGCCATGCCAGCCAGTTGCTGCAGGc                                      >  7:18762/1‑149 (MQ=255)                                                                                                                        ccTGGACCATGGAGAACATGGCCGCTTGCACCGGATTGTCACGGTCGGCTTTTTTCAAGCGTTTCAGCGAGCTGGCCGGGCAGTCACCGGGACAAGTGCTGCTGGCGCTGCGCATGCGCCATGCCAGCCAGTTGCTGCAGGCGGGGCa                                >  1:215601/1‑148 (MQ=255)                                                                                                                         cTGGACCATGGAGAACATGGCCGCTTGCACCGGGTTGTCACGGTCGGCTTTTTTCAAGCGTTTCAGCGAGCTGGCCGGGCAGTCACCGGGACAAGTGCTGCTGGCGCTGCGCATGCGCCATGCCAGCCAGTTGCTGCAGGCGGGGCATa                              <  5:273439/149‑1 (MQ=255)                                                                                                                         cTGGACCATGGAGAACATGGCCGCTTGCACCGGGTTGTCACGGTCGGCTTTTTTCAAGCGTTTCAGCGAGCTGGCCGGGCAGTCACCGGGACAAGTGCTGCTGGCGCTGCGCATGCGCCATGCCAGCCAGTTGCTGCAGGCGGGGCATa                              >  8:268166/1‑149 (MQ=255)                                                                                                                            gACCATGGAGAACATGGCCGCTTGCACCGGGTTGTCACGGTCGGCTTTTTTCAAGCGTTTCAGCGAGCTGGCCGGGCAGTCACCGGGACAAGTGCTGCTGGCGCTGCGCATGCGCCATGCCAGCCAGTTGCTGCAGGCGGGGCATACCg                           <  6:290549/149‑1 (MQ=255)                                                                                                                             aCCATGGAGAACATGGCCGCTTGCACCGGGTTGCCACGGTCGGCTTTTTTCAAGCGTTTCAGCGAGCTGGCCGGGCAGTCACCGGGACAAGTGCTGCTGGCGCTGCGCATGCGCCATGCCAGCCAGTTGCTGCAGGCGGGGCATACCGt                          >  7:141329/1‑149 (MQ=255)                                                                                                                                aTGGAGAACATGGCCGCTTGCACCGGGTTGTCACGGTCGGCTTTTTTCAAGCGTTTCAGCGAGCTGGCCGGGCAGTCACCGGGACAAGTGCTGCTGGCGCTGCGCATGCGCCATGCCAGCCAGTTGCTGCAGGCGGGGCATACCGTTGa                       <  2:215601/149‑1 (MQ=255)                                                                                                                                    agaACATGGCCGCTTGCACCGGGTTGTCACGGTCGGCTTTTTTCAAGCGTTTCAGCGAGCTGGCCGGGCAGTCACCGGGACAAGTGCTGCTGGCGCTGCGCATGCGCCATGCCAGCCAGTTGCTGCAGGCGGGGCATACCGTTGAGCAg                   <  8:186535/149‑1 (MQ=255)                                                                                                                                        cATGGCCGCTTGCAccggatgctcgatcaattgctcaagcaatccggcaaatgccggctggcgggcgagggcgaccagcccgcccagcgattgccctgcgtgcacctgctggcgcagcacgtacaggaacaacaagtgcgtcagccgtt               >  5:119222‑M2/1‑14 (MQ=255)                                                                                                                                            gCCGCTTGCACCGGGTTGTCACGGTCGGCTTTTTTCAAGCGGTTCAGCGAGCTGGCCGGGCAGTCACCGGGACAAGTGCTGCTGGCGCTGCGCATGCGCCATGCCAGCCAGTTGCTGCAGGCGGGGCAGACCGTTGAGCAGGTAGgcgc           <  7:281264/149‑1 (MQ=255)                                                                                                                                                     aCCGGGTTGTCACGGTCGGCTTTTTTCAAGCGTTTCAGCGAGCTGGCCGGGCAGTCACCGGGACAAGTGCTGCTGGCGCTGCGCATGCGCCATGCCAGCCAGTTGCTGCAGGCGGGGCATACCGTTGAGCAGGTAGGCGCGCAGGTggg  <  8:18762/149‑1 (MQ=255)                                                                                                                                                     |                                                                                                                                                     CCTGTACGTGCTGCGCCAGCAGGTGCACGCAGGGCAATCGCTGGGCGGGCTGGTCGCCCTCGCCCGCCAGCCGGCATTTGCCGGATTGCTTGAGCAATTGATCGAGCATCCGGGGCAAACCTGGACCATGGAGAACATGGCCGCTTGCACCGGGTTGTCACGGTCGGCTTTTTTCAAGCGTTTCAGCGAGCTGGCCGGGCAGTCACCGGGACAAGTGCTGCTGGCGCTGCGCATGCGCCATGCCAGCCAGTTGCTGCAGGCGGGGCATACCGTTGAGCAGGTAGGCGCGCAGGTGGG  >  NC_002947/4136316‑4136612

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.