| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 4170895 = | 36 (0.700) | 3 (0.060) | 3/244 | NT | 9.0% | coding (617/906 nt) | PP_3669 | LysR family transcriptional regulator |
| ? | NC_002947 | 4170939 = | 27 (0.560) | coding (661/906 nt) | PP_3669 | LysR family transcriptional regulator | |||||
CCGTCGTCGGCGAGGGCACAAGCGGCATAGTCCGGCACCGTGGCGATCAGCTCGGTGTTGCGCAGCAGGGCGCGCAGGCTACCGAACTGCGGCACCGCCAGCACCACCTTGCGGCAACGCCCGATGCGTGCCAGGTCGAGGTCGATGTTGCCGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/4171048‑4170895‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gttgccgcAAGGTGGTGCTGGCGGTGCCGCAGTTCGGTAGCCTGCGCGCCCTGCTGCGCAACACCGAGCTGATCGCCACGGTGCCGGACTATGCCGCTTGTGCCCTCGCCGACGACGGCAGCTTGCGCGCCGACCCGGCGCCGTTCGACATC > NC_002947/4170939‑4171082 CCGTCGTCGGCGAGGGCACAAGCGGCATAGTCCGGCACCGTGGCGATCAGCTCGGTGTTGCGCAGCAGGGCGCGCAGGCTACCGAACTGCGGCACCGCCAGCACCACCTTGCGGCAACGCCCGATGCGTGCCAGGTCGAGGTCGATGTT > 4:105869/1‑149 ACAAGCGGCATAGTCCGGCACCGTGGCGATCAGCTCGGTGTTGCGCAGCAGGGCGCGCAGGCTACCGAACTGCGGCACCGCCAGCACCACCTTGCGGCAACGCCCGATGCGTGCCAGGTCGAGGTCGATGT > 7:60197/1‑131 ACAAGCGGCATAGTCCGGCACCGTGGCGATCAGCTCGGTGTTGCGCAGCAGGGCGCGCAGGCTACCGAACTGCGGCACCGCCAGCACCACCTTGCGGCAACGCCCGATGCGTGCCAGGTCGAGGTCGATGT < 8:60197/131‑1 GCGATCAGCTCGGTGTTGCGCAGCAGGGCGCGCAGGCTACCGAACTGCGGCACCGCCAGCACCACCTTGCGGCAACGCCCGATGCGTGCCAGGTCGAGGTCGATGTTGC > 7:149958/1‑109 GCGATCAGCTCGGTGTTGCGCAGCAGGGCGCGCAGGCTACCGAACTGCGGCACCGCCAGCACCACCTTGCGGCAACGCCCGATGCGTGCCAGGTCGAGGTCGATGTTGC < 8:149958/109‑1 AACTGCGGCACCGCCAGCACCACCTTGCGGCAACGCCCGATGCGTGCCAGGTCGAGGTCGATGTTGCCGC < 7:200072/70‑1 AACTGCGGCACCGCCAGCACCACCTTGCGGCAACGCCCGATGCGTGCCAGGTCGAGGTCGATGTTGCCGC > 8:200072/1‑70 CACCTTGCGGCAACGCCCGATGCGTGCCAGGTCGAGGTCGATGTTGCCGCAAGGTGGTGCTGGCGGTGCCGCAGTTCGGTAGCCTGCGCGCCCTGCTGCGCAACACCGAGCTGATCGCCACGGTGCCGGACTATGC < 3:83257/136‑1 CACCTTGCGGCAACGCCCGATGCGTGCCAGGTCGAGGTCGATGTTGCCGCAAGGTGGTGCTGGCGGTGCCGCAGTTCGGTAGCCTGCGCGCCCTGCTGCGCAACACCGAGCTGATCGCCACGGTGCCGGACTATGC > 4:83257/1‑136 CTTGCGGCAACGCCCGATGCGTGCCAGGTCGAGGTCGATGTTGCCGCAAGGTGGTGCTGGCGGTGCCGCAGTTCGGTAGCCTGCGCGCCCTGCTGCGCAACACCGAGCTGATCGCCACGGTGCCGGACTATGCCGCTTGTGCCCTCGCC > 6:17783/1‑149 CCGCAAGGTGGTGCTGGCGGTGCCGCAGTTCGGTAGCCTGCGCGCCCTGCTGCGCAACACCGAGCTGATCGCCACGGTGCCGGACTATGCCGCTTGTGCCCTCGCCGACGACGGCAGCTTGCGCGCCGACCCGGCGCCGTTCGACATC < 6:222203/148‑1 CCGTCGTCGGCGAGGGCACAAGCGGCATAGTCCGGCACCGTGGCGATCAGCTCGGTGTTGCGCAGCAGGGCGCGCAGGCTACCGAACTGCGGCACCGCCAGCACCACCTTGCGGCAACGCCCGATGCGTGCCAGGTCGAGGTCGATGTTGCCGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/4171048‑4170895‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gttgccgcAAGGTGGTGCTGGCGGTGCCGCAGTTCGGTAGCCTGCGCGCCCTGCTGCGCAACACCGAGCTGATCGCCACGGTGCCGGACTATGCCGCTTGTGCCCTCGCCGACGACGGCAGCTTGCGCGCCGACCCGGCGCCGTTCGACATC > NC_002947/4170939‑4171082 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |