New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	4170895 =	36 (0.700)	3 (0.060)	3/244	NT	9.0%	coding (617/906 nt)	PP_3669	LysR family transcriptional regulator
	?	NC_002947	4170939 =	27 (0.560)					coding (661/906 nt)	PP_3669	LysR family transcriptional regulator

TAGGTGTACGGGTGCTGCGCGCCGACGACCGCCCGGGGCCTCTGACCCTCGACGAATACTGCGCCCGCCCGCATGTGATGGTGTCGTTTTCCGGTGACATGAGCGGCAACATCGACCTCGACCTGGCACGCATCGGGCGTTGCCGCAAGGTGGTGCTGGCGGTGCCGCAGTTCGGTAGCCTGCGCGCCCTGCTGCGCAACACCGAGCTGATCGCCACGGTGCCGGACTATGCCGCTTGTGCCCTCGCCGACGACGGCAGCTTGCGCGCCGACCCGGCGCCGTTCGACATC  >  NC_002947/4170793‑4171082                                                                                                                                                   |                                                                                                                                                ggcgagggcacaagcggcatagtccggcaccgtggcgatcagctcggtgttgcgcagcagggcgcgcaggctaccgaactgcggcaccgccagcaccaccttGCGGCAACATCGACCTCGACCTGGCACGCATCGGGCGTTGCCGCAAg                                                                                                                                               >  6:17783‑M1/103‑149 (MQ=255)         cGGGTGCTGCGCGCCGACGACCGCCCGGGGCCTCTGACCCTCGACGAATACTGCGCCCGCCCGCATGTGATGGTGTCGTTTTCCGGTGACATGAGCGGCAACATCGACCTCGACCTGGCACGCATCGGGCGTTGCCGCAAGGTGGTGCt                                                                                                                                       >  3:313278/1‑149 (MQ=255)                 gcatagtccggcaccgtggcgatcagctcggtgttgcgcagcagggcgcgcaggctaccgaactgcggcaccgccagcaccaccttGCGGCAACATCGACCTCGACCTGGCACGCATCGGGCGTTGCCGCAAggtg                                                                                                                                            >  4:83257‑M1/87‑136 (MQ=255)                 gcatagtccggcaccgtggcgatcagctcggtgttgcgcagcagggcgcgcaggctaccgaactgcggcaccgccagcaccaccttGCGGCAACATCGACCTCGACCTGGCACGCATCGGGCGTTGCCGCAAggtg                                                                                                                                            <  3:83257‑M1/50‑1 (MQ=255)                  cgcgcCGACGACCGCCCGGGGCCTCTGACCCTCGACGAATACTGCGCCCGCCCGCATGTGATGGTGTCGTTTTCCGGTGACATGAGCGGCAACATCGACCTCGACCTGGCACGCATCGGGCGTTGCCGCAAGGTGGTGCTGGCGGTGcc                                                                                                                              <  3:132929/149‑1 (MQ=255)                           gacCGCCCGGGGCCTCTGACCCTCGACGAATACTGCGCCCGCCCGCATGTGATGGTGTCGTTTTCCGGTGACATGAGCGGCAACATCGACCTCGACCTGGCACGCATCGGGCGTTGCCGCAAGGTGGTGCTGGCGGTGCCGCAGTTCgg                                                                                                                     >  4:175925/1‑149 (MQ=255)                             ccGCCCGGGGCCTCTGACCCTCGACGAATACTGCGCCCGCCCGCATGTGATGGTGTCGTTTTCCGGTGACATGAGCGGCAACATCGACCTCGACCTGGCACGCATCGGGCGTTGCCGCAAGGTGGTGCTGGCGGTGCCGCAGTTCGGTa                                                                                                                   <  3:267934/149‑1 (MQ=255)                              cGCCCGGGGCCTCTGACCCTCGACGAATACTGCGCCCGCCCGCATGTGATGGTGTCGTTTTCCGGTGACATGAGCGGCAACATCGACCTCGACCTGGCACGCATCGGGCGTTGCCGCAAGGTGGTGCTGGCGGTGCCGCAGTTCGGTAg                                                                                                                  >  3:48913/1‑149 (MQ=255)                                        ctctGACCCTCGACGAATACTGCGCCCGCCCGCATGTGATGGTGTCGTTTTCCGGTGACATGAGCGGCAACATCGACCTCGACCTGGCACGCATCGGGCGTTGCCGCAAGGTGGTGCTGGCGGTGCCGCAGTTCGGTAGCCTGCGCGcc                                                                                                        <  4:225966/149‑1 (MQ=255)                                           tGACCCTCGACGAATACTGCGCCCGCCCGCATGTGATGGTGTCGTTTTCCGGTGACATGAGCGGCAACATCGACCTCGACCTGGCACGCATCGGGCGTTGCCGCAAGGTGGTGCTGGCGGTGCCGCAGTTCGGTAGCCTGCGCGccc                                                                                                       <  1:42886/147‑1 (MQ=255)                                               ccTCGACGAATACTGCGCCCGCCCGCATGTGATGGTGTCGTTTTCCGGTGACATGAGCGGCAACATCGACCTCGACCTGGCACGCATCGGGCGTTGCCGCAAGGTGGTGCTGGCGGTGCCGCAGTTCGGTa                                                                                                                   >  5:236981/1‑131 (MQ=255)                                               ccTCGACGAATACTGCGCCCGCCCGCATGTGATGGTGTCGTTTTCCGGTGACATGAGCGGCAACATCGACCTCGACCTGGCACGCATCGGGCGTTGCCGCAAGGTGGTGCTGGCGGTGCCGCAGTTCGGTa                                                                                                                   <  6:236981/131‑1 (MQ=255)                                                cTCGACGAATACTGCGCCCGCCCGCATGTGATGGTGTCGTTTTCCGGTGACATGAGCGGCAACATCGACCTCGACCTGGCACGCATCGGGCGTTGCCGCAAGGTGGTGCTGGCGGTGCCGCAGTTCGGTAGCCTGCGCGCCCTGCTgcg                                                                                                <  2:291204/149‑1 (MQ=255)                                                 tCGACGAATACTGCGCCCGCCCGCATGTGATGGTGTCGTTTTCCGGTGACATGAGCGGCAACATCGACCTCGACCTGGCACGCATCGGGCGTTGCCGCAAGGTGGTGCTGGCGGTGCCGCAGTTCGGTAGCCTGCGCGCCCTGCTgcg                                                                                                >  5:56400/1‑148 (MQ=255)                                                         tACTGCGCCCGCCCGCATGTGATGGTGTCGTTTTCCGGTGACATGAGCGGCAACATCGACCTCGACCTGGCACGCATCGGGCGTTGCCGCAAGGTGGTGCTGGCGGTGCCGCAGTTCGGTAGCCTGCGCGCCCTGCTGCGCAACACCGa                                                                                       <  1:81031/149‑1 (MQ=255)                                                          aCTGCGCCCGCCCGCATGTGATGGTGTCGTTTTCCGGTGACATGAGCGGCAACATCGACCTCGACCTGGCACGCATCGGGCGTTGCCGCAAGGTGGTGCTGGCGGTGCCGCAGTTCGGTAGCCTGCGCGCCCTGCTGCGCAACACCGAg                                                                                      >  3:105869/1‑149 (MQ=255)                                                           cTGCGCCCGCCCGCATGTGATGGTGTCGTTTTCCGGTGACATGAGCGGCAACATCGACCTCGACCTGGCACGCATCGGGCGTTGCCGCAAGGTGGTGCTGGCGGTGCCGCAGTTCGGTAGCCTGCGCGCCCTGCTGCGCAACACCGAg                                                                                      <  6:56400/148‑1 (MQ=255)                                                               gcccgcccGCATGTGATGGTGTCGTTTTCCGGTGACATGAGCGGCAACATCGACCTCGACCTGGCACGCATCGGGCGTTGCCGCAAGGTGGTGCTGGCGGTGCCGCAGTTCGGTAGCCTGCGCGCCCTGCTGCGCAACACCGAGCTGAt                                                                                 <  4:313278/149‑1 (MQ=255)                                                                        cATGTGATGGTGTCGTTTTCCGGTGACATGAGCGGCAACATCGACCTCGACCTGGCACGCATCGGGCGTTGCCGCAAGGTGGTGCTGGCGGTGCCGCAGTTCGGTAGCCTGCGCGCCct                                                                                                      <  6:243574/119‑1 (MQ=255)                                                                        cATGTGATGGTGTCGTTTTCCGGTGACATGAGCGGCAACATCGACCTCGACCTGGCACGCATCGGGCGTTGCCGCAAGGTGGTGCTGGCGGTGCCGCAGTTCGGTAGCCTGCGCGCCct                                                                                                      >  5:243574/1‑119 (MQ=255)                                                                                   gtCGTTTTCCGGTGACATGAGCGGCAACATCGACCTCGACCTGGCACGCATCGGGCGTTGCCGCAAGGTGGTGCTGGCGGTGCCGCAGTTCg                                                                                                                      <  2:314907/92‑1 (MQ=255)                                                                                   gtCGTTTTCCGGTGACATGAGCGGCAACATCGACCTCGACCTGGCACGCATCGGGCGTTGCCGCAAGGTGGTGCTGGCGGTGCCGCAGTTCg                                                                                                                      >  1:314907/1‑92 (MQ=255)                                                                                   gtCGTTTTCCGGTGACATGAGCGGCAACATCGACCTCGACCTGGCACGCATCGGGCGTTGCCGCAAGGTGGTGCTGGCGGTGCCGCAGTTCGGTAGCCTGCGCGCCCtgctgc                                                                                                 <  7:1517/113‑1 (MQ=255)                                                                                   gtCGTTTTCCGGTGACATGAGCGGCAACATCGACCTCGACCTGGCACGCATCGGGCGTTGCCGCAAGGTGGTGCTGGCGGTGCCGCAGTTCGGTAGCCTGCGCGCCCtgctgc                                                                                                 >  8:1517/1‑113 (MQ=255)                                                                                           ccGGTGACATGAGCGGCAACATCGACCTCGACCTGGCACGCATCGGGCGTTGCCGCAAGGTGGTGCTGGCGGTGCCGCAGTTCGGTAGCCTGCGCGCCCTGCTGCGCAACACCGAGCTGATc                                                                                >  1:34445/1‑122 (MQ=255)                                                                                           ccGGTGACATGAGCGGCAACATCGACCTCGACCTGGCACGCATCGGGCGTTGCCGCAAGGTGGTGCTGGCGGTGCCGCAGTTCGGTAGCCTGCGCGCCCTGCTGCGCAACACCGAGCTGATc                                                                                <  2:34445/122‑1 (MQ=255)                                                                                            cGGTGACATGAGCGGCAACATCGACCTCGACCTGGCACGCATCGGGCGTTGCCGCAAGGTGGTGCTGGCGGTGCCGCAGTTCGGTAGCCTGCGCGCCCTGCTGCGCAACACCGAGCTGATCGCCACGGTGCCGGACTATGCCGCTtgtg                                                    <  4:48913/149‑1 (MQ=255)                                                                                            cGGTGACATGAGCGGCAACATCGACCTCGACCTGGCACGCATCGGGCGTTGCCGCAAGGTGGTGCTGGCGGTGCCGCAGTTCGGTAGCCTGCGCGCCCTGCTGCGCAACACCGAGCTGATCGCCACGGTGCCGGACTATGCCGCTtgt                                                     <  6:235076/148‑1 (MQ=255)                                                                                                 caccttgcggcaacgcccgatgcgtgccaggtcgaggtcgatgttgccgcAAGGTGGTGCTGGCGGTGCCGCAGTTCGGTAGCCTGCGCGCCCTGCTGCGCAACACCGAGCTGATCGCCACGGTGCCGGACTATGc                                                            >  4:83257‑M2/51‑136 (MQ=255)                                                                                                 caccttgcggcaacgcccgatgcgtgccaggtcgaggtcgatgttgccgcAAGGTGGTGCTGGCGGTGCCGCAGTTCGGTAGCCTGCGCGCCCTGCTGCGCAACACCGAGCTGATCGCCACGGTGCCGGACTATGc                                                            <  3:83257‑M2/86‑1 (MQ=255)                                                                                                    cttgcggcaacgcccgatgcgtgccaggtcgaggtcgatgttgccgcAAGGTGGTGCTGGCGGTGCCGCAGTTCGGTAGCCTGCGCGCCCTGCTGCGCAACACCGAGCTGATCGCCACGGTGCCGGACTATGCCGCTTGTGCCCTCGcc                                            >  6:17783‑M2/48‑149 (MQ=255)                                                                                                       GCGGCAACATCGACCTCGACCTGGCACGCATCGGGCGTTGCCGCAAGGTGGTGCTGGCGGTGCCGCAGtt                                                                                                                        <  7:200072‑M1/70‑1 (MQ=255)                                                                                                       GCGGCAACATCGACCTCGACCTGGCACGCATCGGGCGTTGCCGCAAGGTGGTGCTGGCGGTGCCGCAGtt                                                                                                                        >  8:200072‑M1/1‑70 (MQ=255)                                                                                                          GCAACATCGACCTCGACCTGGCACGCATCGGGCGTTGCCGCAAGGTGGTGCTGGCGGTGCCGCAGTTCGGTAGCCTGCGCGCCCTGCTGCGCAACACCGAGCTGATCGc                                                                              >  7:149958‑M1/1‑109 (MQ=255)                                                                                                          GCAACATCGACCTCGACCTGGCACGCATCGGGCGTTGCCGCAAGGTGGTGCTGGCGGTGCCGCAGTTCGGTAGCCTGCGCGCCCTGCTGCGCAACACCGAGCTGATCGc                                                                              <  8:149958‑M1/109‑1 (MQ=255)                                                                                                            AACATCGACCTCGACCTGGCACGCATCGGGCGTTGCCGCAAGGTGGTGCTGGCGGTGCCGCAGTTCGGTAGCCTGCGCGCCCTGCTGCGCAACACCGAGCTGATCGCCACGGTGCCGGACTATGCCGCTTGTGCCCTCGCCGACGACgg                                    >  4:105869‑M1/1‑149 (MQ=255)                                                                                                             ACATCGACCTCGACCTGGCACGCATCGGGCGTTGCCGCAAGGTGGTGCTGGCGGTGCCGCAGTTCGGTAGCCTGCGCGCCCTGCTGCGCAACACCGAGCTGATCGCCACGGTGCCGGACTATGCCGCTtgt                                                     >  7:60197‑M1/1‑131 (MQ=255)                                                                                                             ACATCGACCTCGACCTGGCACGCATCGGGCGTTGCCGCAAGGTGGTGCTGGCGGTGCCGCAGTTCGGTAGCCTGCGCGCCCTGCTGCGCAACACCGAGCTGATCGCCACGGTGCCGGACTATGCCGCTtgt                                                     <  8:60197‑M1/131‑1 (MQ=255)                                                                                                                 cgacctcgacctGGCACGCATCGGGCGTTGCCGCAAGGTGGTGCTGGCGGTGCCGCAGTTCGGTAGCCTGCGCGCCCTGCTGCGCAACACCGAGCTGATCGCTACGGTGCCGGACTATGCCGCTTGTGCCCTCGCCGACGACGGCAGCt                               >  6:137122/1‑149 (MQ=255)                                                                                                                   acctcgacctGGCACGCATCGGGCGTTGCCGCAAGGTGGTGCTGGCGGTGCCGCAGTTCGGTAGCCTGCGCGCCCTGCTGCGCAACACCGAGCTGATCGCCACGGTGCCGGACTATGCCGCTTGTGCCCTCGCCGACGACGGCAGCTTg                             >  3:21146/1‑149 (MQ=255)                                                                                                                                        ggCGTTGCCGCAAGGTGGTGCTGGCGGTGCCGCAGTTCGGTAGCCTGCGCGCCCTGCTGCGCAACACCGAGCTGATCGCTACGGTGCCGGACTATGCCGCTTGTGCCCTCGCCGACGACGGCAGCTTGCGCGCCGACCCGGCGCCGTTc        <  5:137122/149‑1 (MQ=255)                                                                                                                                          cGTTGCCGCAAGGTGGTGCTGGCGGTGCCGCAGTTCGGTAGCCTGCGCGCCCTGCTGCGCAACACCGAGCTGATCGCCACGGTGCCGGACTATGCCGCTTGTGCCCTCGCCGACGACGGCAGCTTGCGCGCCGACCCGGCGCCGTTCGa      <  4:21146/149‑1 (MQ=255)                                                                                                                                               ccgcAAGGTGGTGCTGGCGGTGCCGCAGTTCGGTAGCCTGCGCGCCCTGCTGCGCAACACCGAGCTGATCGCCACGGTGCCGGACTATGCCGCTTGTGCCCTCGCCGACGACGGCAGCTTGCGCGCCGACCCGGCGCCGTTCGACATc  <  6:222203‑M2/144‑1 (MQ=255)                                                                                                                                                   |                                                                                                                                                TAGGTGTACGGGTGCTGCGCGCCGACGACCGCCCGGGGCCTCTGACCCTCGACGAATACTGCGCCCGCCCGCATGTGATGGTGTCGTTTTCCGGTGACATGAGCGGCAACATCGACCTCGACCTGGCACGCATCGGGCGTTGCCGCAAGGTGGTGCTGGCGGTGCCGCAGTTCGGTAGCCTGCGCGCCCTGCTGCGCAACACCGAGCTGATCGCCACGGTGCCGGACTATGCCGCTTGTGCCCTCGCCGACGACGGCAGCTTGCGCGCCGACCCGGCGCCGTTCGACATC  >  NC_002947/4170793‑4171082

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.