New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	4170895 =	36 (0.700)	3 (0.060)	3/244	NT	9.0%	coding (617/906 nt)	PP_3669	LysR family transcriptional regulator
	?	NC_002947	4170939 =	27 (0.560)					coding (661/906 nt)	PP_3669	LysR family transcriptional regulator

CCACCGACCTGCCGGCCACCGCCAAACGCCGCAAGCTGCGCGACATAGGTGTACGGGTGCTGCGCGCCGACGACCGCCCGGGGCCTCTGACCCTCGACGAATACTGCGCCCGCCCGCATGTGATGGTGTCGTTTTCCGGTGACATGAGCGGCAACATCGACCTCGACCTGGCACGCATCGGGCGTTGCCGCAAGGTGGTGCTGGCGGTGCCGCAGTTCGGTAGCCTGCGCGCCCTGCTGCGCAACACCGAGCTGATCGCCACGGTGCCGGACTATGCCGCTTGTG  >  NC_002947/4170748‑4171032                                                                                                                                                    |                                                                                                                                          ccaccGACCTGCCGGCCACCGCCAAACGCCGCAAGCTGCGCGACATAGGTGTACGGGTGCTGCGCGCCGACGACCGCCCGGGGCCTCTGACCCTCGACGAATACTGCGCCCGCCCGCATGTGATGGTGTCGTTTTCCGGTGACATGAGc                                                                                                                                          <  1:139186/149‑1 (MQ=255) ccaccGACCTGCCGGCCACCGCCAAACGCCGCAAGCTGCGCGACATAGGTGTACGGGTGCTGCGAGCCGACGACCGCCCGGGGCCTCTGACCCTCGACGAATACTGCGCCCGCCCGCATGTGATGGTGTCGTTTTCCGGTGACATGAGc                                                                                                                                          <  2:86374/149‑1 (MQ=255)  caccGACCTGCCGGCCACCGCCAAACGACGCAAGCTGCGCGACATAGGTGTACGGGTGCTGCGCGCCGACGACCGCCCGGGGCCTCTGACCCTCGACGAATACTGCGCCCGCCCGCATGTGATGGTGTCGTTTTCCGGTGACATGAGCg                                                                                                                                         >  1:9819/1‑149 (MQ=255)    gatgtcgaacggcgccgggtcggcgcgcaagctgccgtcgtcggcgagggcacaagcggcatagtccggcaccgtggcgatcagctcggtgttgcgcagcagggcgcgcaggctaccgaactgcggcaccgccagcaccaccttGCgg                                                                                                                                        <  6:222203‑M1/4‑1 (MQ=255)      gACCTGCCGGCCACCGCCAAACGCCGCAAGCTGCGCGACATAGGTGTACGGGTGCTGCGCGCCGACGACCGCCCGGGGCCTCTGACCCTCGACGAATACTGCGCCCGCCCGCATGTGATGGTGTCGTTTTCCGGTGACATGAGCGGCaa                                                                                                                                     <  2:9819/149‑1 (MQ=255)              ggCCACCGCCAAACGCCGCAAGCTGCGCGACATAGGTGTACGGGTGCTGCGCGCCGACGACCGCCCGGGGCCTCTGACCCTCGACGAATACTGCGCCCGCCCGCATGTGATGGTGTCGTTTTCCGGTGACATGAGCGGCAACAtcgacc                                                                                                                             >  4:267934/1‑149 (MQ=255)                 cACCGCCAAACGCCGCAAGCTGCGCGACATAGGTGTACGGGTGCTGCGCGCCGACGACCGCCCGGGGCCTCTGACCCTCGACGAATACTGCGCCCGCCCGCATGTGATGGTGTCGTTTTCCGGTGACATGAGCGGCAACAtcgacctc                                                                                                                           >  5:235076/1‑148 (MQ=255)                  aCCGCCAAACGCCGCAAGCTGCGCGACATAGGTGTACGGGTGCTGCGCGCCGACGACCGCCCGGGGCCTCTGACCCTCGACGAATACTGCGCCCGCCCGCATGTGATGGTGTCGTTTTCCGGTGACATGAGCGGCAACAtcgacctcga                                                                                                                         <  4:262130/149‑1 (MQ=255)                  aCCGCCAAACGCCGCAAGCTGCGCGACATAGGTGTACGGGTGCTGCGCGCCGACGACCGCCCGGGGCCTCTGACCCTCGACGAATACTGCGCCCGCCCGCATGTGATGGTATCGTTTTCCGGTGACATGAGCGGCAACAtcgacctcga                                                                                                                         >  5:222203/1‑149 (MQ=255)                     gCCAAACGCCGCAAGCTGCGCGACATAGGTGTACGGGTGCTGCGCGCCGACGACCGCCCGGGGCCTCTGACCCTCGACGAATACTGCGCCCGCCCGCATGTGATGGTGTCGTTTTCCGGTGACATGAGCGGCAACATcgacctcgacct                                                                                                                      >  2:42886/1‑149 (MQ=255)                     gCCAAACGCCGCAAGCTGCGCGACATAGGTGTACGGGTGCTGCGCGCCGACGACCGCCCGGGGCCTCTGACCCTCGACGAATACTGCGCCCGCCCGCATGTGATGGTGTCGTTTTCCGGTGACATGAGCGGCAACATcgacctcgacct                                                                                                                      >  3:225966/1‑149 (MQ=255)                                  aGCTGCGCGACATAGGTGTACGGGTGCTGCGCGCCGACGACCGCCCGGGGCCGCTGACCCTCGACGAATACTGCGCCCGCCCGCATGTGATGGTGTCGGTTTCCGGTGACATGAGCGGCAACATCGACCTCGACCTGGCACGCATCggg                                                                                                         <  6:315845/149‑1 (MQ=255)                                      gcgcGACATAGGTGTACGGGTGCTGCGCGCCGACGACCGCCCGGGGCCTCTGACCCTCGACGAATACTGCGCCCGCCCGGATGTCATGGTGTCGTTTTGCGGTGACATGAGCGGCAGCATCGAGCTCGACCTGGCACGAATCGGGCGtt                                                                                                     >  8:109054/1‑149 (MQ=255)                                              ggcgagggcacaagcggcatagtccggcaccgtggcgatcagctcggtgttgcgcagcagggcgcgcaggctaccgaactgcggcaccgccagcaccaccttGCGGCAACATCGACCTCGACCTGGCACGCATCGGGCGTTGCCGCAAg                                                                                             >  6:17783‑M1/103‑149 (MQ=255)                                                      cGGGTGCTGCGCGCCGACGACCGCCCGGGGCCTCTGACCCTCGACGAATACTGCGCCCGCCCGCATGTGATGGTGTCGTTTTCCGGTGACATGAGCGGCAACATCGACCTCGACCTGGCACGCATCGGGCGTTGCCGCAAGGTGGTGCt                                                                                     >  3:313278/1‑149 (MQ=255)                                                       gggTGCTGCGCGCCGACGACCGCCCGGGGCCTCTGACCCTCGACGAATACTGCGCCCGCCCGCATGTGATGGTGTCGTTTTCCGGTGACATGAg                                                                                                                                           <  2:216849/94‑1 (MQ=255)                                                       gggTGCTGCGCGCCGACGACCGCCCGGGGCCTCTGACCCTCGACGAATACTGCGCCCGCCCGCATGTGATGGTGTCGTTTTCCGGTGACATGAg                                                                                                                                           >  1:216849/1‑94 (MQ=255)                                                              gcatagtccggcaccgtggcgatcagctcggtgttgcgcagcagggcgcgcaggctaccgaactgcggcaccgccagcaccaccttGCGGCAACATCGACCTCGACCTGGCACGCATCGGGCGTTGCCGCAAggtg                                                                                          >  4:83257‑M1/87‑136 (MQ=255)                                                              gcatagtccggcaccgtggcgatcagctcggtgttgcgcagcagggcgcgcaggctaccgaactgcggcaccgccagcaccaccttGCGGCAACATCGACCTCGACCTGGCACGCATCGGGCGTTGCCGCAAggtg                                                                                          <  3:83257‑M1/50‑1 (MQ=255)                                                               cgcgcCGACGACCGCCCGGGGCCTCTGACCCTCGACGAATACTGCGCCCGCCCGCATGTGATGGTGTCGTTTTCCGGTGACATGAGCGGCAACATCGACCTCGACCTGGCACGCATCGGGCGTTGCCGCAAGGTGGTGCTGGCGGTGcc                                                                            <  3:132929/149‑1 (MQ=255)                                                                        gacCGCCCGGGGCCTCTGACCCTCGACGAATACTGCGCCCGCCCGCATGTGATGGTGTCGTTTTCCGGTGACATGAGCGGCAACATCGACCTCGACCTGGCACGCATCGGGCGTTGCCGCAAGGTGGTGCTGGCGGTGCCGCAGTTCgg                                                                   >  4:175925/1‑149 (MQ=255)                                                                          ccGCCCGGGGCCTCTGACCCTCGACGAATACTGCGCCCGCCCGCATGTGATGGTGTCGTTTTCCGGTGACATGAGCGGCAACATCGACCTCGACCTGGCACGCATCGGGCGTTGCCGCAAGGTGGTGCTGGCGGTGCCGCAGTTCGGTa                                                                 <  3:267934/149‑1 (MQ=255)                                                                           cGCCCGGGGCCTCTGACCCTCGACGAATACTGCGCCCGCCCGCATGTGATGGTGTCGTTTTCCGGTGACATGAGCGGCAACATCGACCTCGACCTGGCACGCATCGGGCGTTGCCGCAAGGTGGTGCTGGCGGTGCCGCAGTTCGGTAg                                                                >  3:48913/1‑149 (MQ=255)                                                                                     ctctGACCCTCGACGAATACTGCGCCCGCCCGCATGTGATGGTGTCGTTTTCCGGTGACATGAGCGGCAACATCGACCTCGACCTGGCACGCATCGGGCGTTGCCGCAAGGTGGTGCTGGCGGTGCCGCAGTTCGGTAGCCTGCGCGcc                                                      <  4:225966/149‑1 (MQ=255)                                                                                        tGACCCTCGACGAATACTGCGCCCGCCCGCATGTGATGGTGTCGTTTTCCGGTGACATGAGCGGCAACATCGACCTCGACCTGGCACGCATCGGGCGTTGCCGCAAGGTGGTGCTGGCGGTGCCGCAGTTCGGTAGCCTGCGCGccc                                                     <  1:42886/147‑1 (MQ=255)                                                                                            ccTCGACGTATACTGCGCCCGCCCGCATGTGATGGTGTCGTTTTCCGGTGACATGAGCGGCAACAtcgac                                                                                                                              <  4:178421/70‑1 (MQ=255)                                                                                            ccTCGACGTATACTGCGCCCGCCCGCATGTGATGGTGTCGTTTTCCGGTGACATGAGCGGCAACAtcgac                                                                                                                              >  3:178421/1‑70 (MQ=255)                                                                                            ccTCGACGAATACTGCGCCCGCCCGCATGTGATGGTGTCGTTTTCCGGTGACATGAGCGGCAACATCGACCTCGACCTGGCACGCATCGGGCGTTGCCGCAAGGTGGTGCTGGCGGTGCCGCAGTTCGGTa                                                                 <  6:236981/131‑1 (MQ=255)                                                                                            ccTCGACGAATACTGCGCCCGCCCGCATGTGATGGTGTCGTTTTCCGGTGACATGAGCGGCAACATCGACCTCGACCTGGCACGCATCGGGCGTTGCCGCAAGGTGGTGCTGGCGGTGCCGCAGTTCGGTa                                                                 >  5:236981/1‑131 (MQ=255)                                                                                             cTCGACGAATACTGCGCCCGCCCGCATGTGATGGTGTCGTTTTCCGGTGACATGAGCGGCAACATCGACCTCGACCTGGCACGCATCGGGCGTTGCCGCAAGGTGGTGCTGGCGGTGCCGCAGTTCGGTAGCCTGCGCGCCCTGCTgcg                                              <  2:291204/149‑1 (MQ=255)                                                                                              tCGACGAATACTGCGCCCGCCCGCATGTGATGGTGTCGTTTTCCGGTGACATGAGCGGCAACATCGACCTCGACCTGGCACGCATCGGGCGTTGCCGCAAGGTGGTGCTGGCGGTGCCGCAGTTCGGTAGCCTGCGCGCCCTGCTgcg                                              >  5:56400/1‑148 (MQ=255)                                                                                                      tACTGCGCCCGCCCGCATGTGATGGTGTCGTTTTCCGGTGACATGAGCGGCAACATCGACCTCGACCTGGCACGCATCGGGCGTTGCCGCAAGGTGGTGCTGGCGGTGCCGCAGTTCGGTAGCCTGCGCGCCCTGCTGCGCAACACCGa                                     <  1:81031/149‑1 (MQ=255)                                                                                                       aCTGCGCCCGCCCGCATGTGATGGTGTCGTTTTCCGGTGACATGAGCGGCAACATCGACCTCGACCTGGCACGCATCGGGCGTTGCCGCAAGGTGGTGCTGGCGGTGCCGCAGTTCGGTAGCCTGCGCGCCCTGCTGCGCAACACCGAg                                    >  3:105869/1‑149 (MQ=255)                                                                                                        cTGCGCCCGCCCGCATGTGATGGTGTCGTTTTCCGGTGACATGAGCGGCAACATCGACCTCGACCTGGCACGCATCGGGCGTTGCCGCAAGGTGGTGCTGGCGGTGCCGCAGTTCGGTAGCCTGCGCGCCCTGCTGCGCAACACCGAg                                    <  6:56400/148‑1 (MQ=255)                                                                                                            gcccgcccGCATGTGATGGTGTCGTTTTCCGGTGACATGAGCGGCAACATCGACCTCGACCTGGCACGCATCGGGCGTTGCCGCAAGGTGGTGCTGGCGGTGCCGCAGTTCGGTAGCCTGCGCGCCCTGCTGCGCAACACCGAGCTGAt                               <  4:313278/149‑1 (MQ=255)                                                                                                                     cATGTGATGGTGTCGTTTTCCGGTGACATGAGCGGCAACATCGACCTCGACCTGGCACGCATCGGGCGTTGCCGCAAGGTGGTGCTGGCGGTGCCGCAGTTCGGTAGCCTGCGCGCCct                                                    >  5:243574/1‑119 (MQ=255)                                                                                                                     cATGTGATGGTGTCGTTTTCCGGTGACATGAGCGGCAACATCGACCTCGACCTGGCACGCATCGGGCGTTGCCGCAAGGTGGTGCTGGCGGTGCCGCAGTTCGGTAGCCTGCGCGCCct                                                    <  6:243574/119‑1 (MQ=255)                                                                                                                                gtCGTTTTCCGGTGACATGAGCGGCAACATCGACCTCGACCTGGCACGCATCGGGCGTTGCCGCAAGGTGGTGCTGGCGGTGCCGCAGTTCg                                                                    <  2:314907/92‑1 (MQ=255)                                                                                                                                gtCGTTTTCCGGTGACATGAGCGGCAACATCGACCTCGACCTGGCACGCATCGGGCGTTGCCGCAAGGTGGTGCTGGCGGTGCCGCAGTTCg                                                                    >  1:314907/1‑92 (MQ=255)                                                                                                                                gtCGTTTTCCGGTGACATGAGCGGCAACATCGACCTCGACCTGGCACGCATCGGGCGTTGCCGCAAGGTGGTGCTGGCGGTGCCGCAGTTCGGTAGCCTGCGCGCCCtgctgc                                               <  7:1517/113‑1 (MQ=255)                                                                                                                                gtCGTTTTCCGGTGACATGAGCGGCAACATCGACCTCGACCTGGCACGCATCGGGCGTTGCCGCAAGGTGGTGCTGGCGGTGCCGCAGTTCGGTAGCCTGCGCGCCCtgctgc                                               >  8:1517/1‑113 (MQ=255)                                                                                                                                        ccGGTGACATGAGCGGCAACATCGACCTCGACCTGGCACGCATCGGGCGTTGCCGCAAGGTGGTGCTGGCGGTGCCGCAGTTCGGTAGCCTGCGCGCCCTGCTGCGCAACACCGAGCTGATc                              <  2:34445/122‑1 (MQ=255)                                                                                                                                        ccGGTGACATGAGCGGCAACATCGACCTCGACCTGGCACGCATCGGGCGTTGCCGCAAGGTGGTGCTGGCGGTGCCGCAGTTCGGTAGCCTGCGCGCCCTGCTGCGCAACACCGAGCTGATc                              >  1:34445/1‑122 (MQ=255)                                                                                                                                         cGGTGACATGAGCGGCAACATCGACCTCGACCTGGCACGCATCGGGCGTTGCCGCAAGGTGGTGCTGGCGGTGCCGCAGTTCGGTAGCCTGCGCGCCCTGCTGCGCAACACCGAGCTGATCGCCACGGTGCCGGACTATGCCGCTtgtg  <  4:48913/149‑1 (MQ=255)                                                                                                                                         cGGTGACATGAGCGGCAACATCGACCTCGACCTGGCACGCATCGGGCGTTGCCGCAAGGTGGTGCTGGCGGTGCCGCAGTTCGGTAGCCTGCGCGCCCTGCTGCGCAACACCGAGCTGATCGCCACGGTGCCGGACTATGCCGCTtgt   <  6:235076/148‑1 (MQ=255)                                                                                                                                                    GCGGCAACATCGACCTCGACCTGGCACGCATCGGGCGTTGCCGCAAGGTGGTGCTGGCGGTGCCGCAGtt                                                                      <  7:200072‑M1/70‑1 (MQ=255)                                                                                                                                                    GCGGCAACATCGACCTCGACCTGGCACGCATCGGGCGTTGCCGCAAGGTGGTGCTGGCGGTGCCGCAGtt                                                                      >  8:200072‑M1/1‑70 (MQ=255)                                                                                                                                                    |                                                                                                                                          CCACCGACCTGCCGGCCACCGCCAAACGCCGCAAGCTGCGCGACATAGGTGTACGGGTGCTGCGCGCCGACGACCGCCCGGGGCCTCTGACCCTCGACGAATACTGCGCCCGCCCGCATGTGATGGTGTCGTTTTCCGGTGACATGAGCGGCAACATCGACCTCGACCTGGCACGCATCGGGCGTTGCCGCAAGGTGGTGCTGGCGGTGCCGCAGTTCGGTAGCCTGCGCGCCCTGCTGCGCAACACCGAGCTGATCGCCACGGTGCCGGACTATGCCGCTTGTG  >  NC_002947/4170748‑4171032

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.