New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 4247728	43 (0.830)	3 (0.060)	3/244	NT	6.8%	coding (189/1608 nt)	aruI	2‑ketoarginine decarboxylase AruI
	?	NC_002947	= 4247766	42 (0.870)					coding (151/1608 nt)	aruI	2‑ketoarginine decarboxylase AruI

AGCCCCAGCCCTTGCCCAGGCTGGCGGTGTGGTTGACGCTGGAAATCACCAGCATCGGCACCGAGTCGGCATAGGCTTGGCCGATGGGGGTGGCGACGTTGGTCACGCCTGGGCCGGTGATGACGAAGCACACCCCCGGCTTGCCACTGACCCGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/4247574‑4247728 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgacccgcCACGAGCAGGGCGCCGGCTTCATGGCCGACGGCTACGCGCGGGTCAGTGGCAAGCCGGGGGTGTGCTTCGTCATCACCGGCCCAGGCGTGACCAACGTCGCCACCCCCATCGGCCAAGCCTATGCCGACTCGGTGCCGATGCTGGT  <  NC_002947/4247766‑4247621                                                                                                                                                                                                                                                                                                               AGCCCCAGCCCTTGCCCAGGCTGGCGGTGTGGTTGACGCTGGAAATCACCAGCATCGGCACCGAGTCGGCATAGGCTTGGCCGATGGGGGTGGCGACGTTGGTCACGCCTGGGCCGGTGATGACGAAGCACACCCCCGGCTTGCCACT                                                                                                                                                           >  1:273088/1‑148                                                        CGGCACCTAGTCGGCATAGGCGTGGCCGATGGGGGTGGCGACGTTGGTCACGCCTGGGCCGGTGATGACGAAGCACACCCCCGGCTTGCCACTGACCCGCCACGAGCAGGGCGCCGGCTTCATGGCCGACGGCTACGCGCGGGTCAGTG                                                                                                   <  5:314346/149‑1                                                                             TTGGCCGATGGGGGTGGCGACGTTGGTCACGCCTGGGCCGGTGATGACGAAGCACACCCCCGGCTTGCCACTGACCCGCCACGAGCAGGGCGCCGGCTTCATGGCTGACGGCTACGCGCGGGTC                                                                                                       <  1:39458/124‑1                                                                             TTGGCCGATGGGGGTGGCGACGTTGGTCACGCCTGGGCCGGTGATGACGAAGCACACCCCCGGCTTGCCACTGACCCGCCACGAGCAGGGCGCCGGCTTCATGGCTGACGGCTACGCGCGGGTC                                                                                                       >  2:39458/1‑124                                                                                                                                                     GACCCGCCACGAGCAGGGCGCCGGCTTCATGGCCGACGGCTACGCGCGGGACAGTCGCAAGCCGGGGGTGTGCTTCGTCATCACCGGCCCAGGCGTGACCAACCTCGCCACCCCCATCGGCCAACCCTATGCCGACACGGTGCCGATGC      >  8:54219/1‑149                                                                                                                                                      ACCCGCCACGAGCAGGGCGCCGGCTTCATGGCCGACGGCTACGCGCGGGTCAGTGGCAAGCCGGGGGTGTGCTTCGTCATCACCGGCCCAGGCGTGACCAACGTCGCCACCCCCATCGGCCAAGCCTATGCCGACTCGGTGCCGATGCT     >  6:127286/1‑149                                                                                                                                                        CCGCCACGAGCAGGGCGCCGGCTTCATGGCCGACGGCTACGCGCGGGTCAGTGGCAAGCCGGGGGTGTACTTCGTCATCACCGGCCCAGGCGTGACCAACGTCGCCACCCCCATCGGCCAAGCCTATGCCGACTCGGTGCCGATGCTGG   <  4:216227/149‑1                                                                                                                                                         CGCCACGAGCAGGGCGCCGGCTTCATGGCCGACGGCTACGCGCGGGTCAGTGGCAAGCCGGGGGTGTGCTTCGTCATCACCGGCCCAGGCGTGACCAACGTCGCCACCCCCATCGGCCAAGCCTATGCCGACTCGGTGCCGATGCTGGT  <  8:218574/149‑1                                                                                                                                                                                                                                                                                                               AGCCCCAGCCCTTGCCCAGGCTGGCGGTGTGGTTGACGCTGGAAATCACCAGCATCGGCACCGAGTCGGCATAGGCTTGGCCGATGGGGGTGGCGACGTTGGTCACGCCTGGGCCGGTGATGACGAAGCACACCCCCGGCTTGCCACTGACCCGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/4247574‑4247728 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgacccgcCACGAGCAGGGCGCCGGCTTCATGGCCGACGGCTACGCGCGGGTCAGTGGCAAGCCGGGGGTGTGCTTCGTCATCACCGGCCCAGGCGTGACCAACGTCGCCACCCCCATCGGCCAAGCCTATGCCGACTCGGTGCCGATGCTGGT  <  NC_002947/4247766‑4247621

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.