New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 4247728	43 (0.830)	3 (0.060)	3/244	NT	6.8%	coding (189/1608 nt)	aruI	2‑ketoarginine decarboxylase AruI
	?	NC_002947	= 4247766	42 (0.870)					coding (151/1608 nt)	aruI	2‑ketoarginine decarboxylase AruI

ACCAGCATCGGCACCGAGTCGGCATAGGCTTGGCCGATGGGGGTGGCGACGTTGGTCACGCCTGGGCCGGTGATGACGAAGCACACCCCCGGCTTGCCACTGACCCGCGCGTAGCCGTCGGCCATGAAGCCGGCGCCCTGCTCGTGGCGGGTCAATACATGGCGAATGCCGCTGCCCGGCAG‑GCCACGGTACAGCTCCAGGGTGTGCACGCCGGGGATGCCGAACACGGTCTCCACGCCGTAGTTGGCCAACAACCGCACCAGCGCCTGGCCGGCTGTCAGGGTAAGGT  >  NC_002947/4247621‑4247909                                                                                                                                                  |                                                                                                                                                 aCCAGCATCGGCACCGAGTCGGCATAGGCTTGGCCGATGGGGGTGGCGACGTTGGTCACGCCTGGGCCGGTGATGACGAAGCACACCCCCGGCTTGCCACTGACCCGCGCGTAGCCGTCGGCCATGAAGCCGGCGCCCTGCTCGTGgcg                                                                                                                                               <  8:218574‑M2/149‑4 (MQ=255)  ccAGCATCGGCACCGAGTCGGCATAGGCTTGGCCGATGGGGGTGGCGACGTTGGTCACGCCTGGGCCGGTGATGACGAAGTACACCCCCGGCTTGCCACTGACCCGCGCGTAGCCGTCGGCCATGAAGCCGGCGCCCTGCTCGTGgcgg                                                                                                                                              <  4:216227‑M2/149‑5 (MQ=255)    aGCATCGGCACCGAGTCGGCATAGGCTTGGCCGATGGGGGTGGCGACGTTGGTCACGCCTGGGCCGGTGATGACGAAGCACACCCCCGGCTTGCCACTGACCCGCGCGTAGCCGTCGGCCATGAAGCCGGCGCCCTGCTCGTGgcgggt                                                                                                                                            >  6:127286‑M2/1‑143 (MQ=255)     gCATCGGCACCGTGTCGGCATAGGGTTGGCCGATGGGGGTGGCGAGGTTGGTCACGCCTGGGCCGGTGATGACGAAGCACACCCCCGGCTTGCGACTGTCCCGCGCGTAGCCGTCGGCCATGAAGCCGGCGCCCTGCTCGTGgcgggtc                                                                                                                                           >  8:54219‑M2/1‑142 (MQ=255)        tCGGCACCGAGTCGGCATAGGCTTGGCCGATGGGGGTGGCGACGTTGGTCACGCCTGGGCCGGTGATGACGAAGCACACCCCCGGCTTGCCACTGACCCGCGCGTAGCCGTCGGCCATGAAGCCGGCGCCCTGCTCGTGGCGGGTCAAt                                                                                                                                        <  6:297206/149‑1 (MQ=255)          ggCACCGAGTCGGCATAGGCTTGGCCGATGGGGGTGGCGACGTTGGTCACGCCTGGGCCGGTGATGACGAAGCACACCCCCGGCTTGCCACTGACCCGCGCGTAGCCGTCGGCCATGAAGCCGGCGCCCTGCTCGTGGCGGGTCAATa                                                                                                                                       >  6:323151/1‑148 (MQ=255)            cACCGAGTCGGCATAGGCTTGGCCGATGGGGGTGGCGACGTTGGTCACGCCTGGGCCGGTGATGACGAAGCACACCCCCGGCTTGCCACTGACCCGCGCGTAGCCGTCGGCCATGAAGCCGGCGCCCTGCTCGTGGCGGGTCAATACAt                                                                                                                                    >  1:121119/1‑149 (MQ=255)              ccGAGTCGGCATAGGCTTGGCCGATGGGGGTGGCGACGTTGGTCACGCCTGGGCCGGTGATGACGAAGCACACCCCCGGCTTGCCACTGACCCGCGCGTAGCCGTCGGCCATGAAGCCGGCGCCCTGCTCGTGGCGGGTCAATACATgg                                                                                                                                  <  6:24007/149‑1 (MQ=255)                   tCGGCATAGGCTTGGCCGATGGGGGTGGCGACGTTGGTCACGCCTGGGCCGGTGATGACGAAGCACACCCCCGGCTTGCCACTGACCCGCGCGTAGCCGTCGGCGATGAAGCCGGCGCCCTGCTCGTGGCGGGTCAATACATGGCGAAt                                                                                                                             <  2:220041/149‑1 (MQ=255)                     ggCATAGGCTTGGCCGATGGGGGTGGCGACGTTGGTCACGCCTGGGCCGGTGATGACGAAGCACACCCCCGGCTTGCCACTGACCCGCGCGTAGCCGTCGGCCATGAAGCCGGCGCCCTGCTCGTGGCGGGTCAATACATGGCGAATGc                                                                                                                           >  2:238565/1‑149 (MQ=255)                         tAGGCTTGGCCGATGGGGGTGGCGACGTTGGTCACGCCTGGGCCGGTGATGACGAAGCACACCCCCGGCTTGCCACTGACCCGCGCGTAGCCGTCGGCCATGAAGCCGGCGCCCTGCTCGTGGCGGGTCAATACATGGCGAATGCCGCt                                                                                                                       >  8:133931/1‑149 (MQ=255)                            gCTTGGCCGATGGGGGTGGCGACGTTGGTCACGCCTGGGCCGGTGATGACGAAGCACACCCCCGGCTTGCCACTGACCCGCGCGTAGCCGTCGGCCATGAAGCCGGCGCCCTGCTCGTGGCGGGTCAATACATGGCGAATGCCGCTGcc                                                                                                                    >  6:63194/1‑149 (MQ=255)                            gCTTGGCCGATGGGGGTGGCGACGTTGGTCACGCCTGGGCCGGTGATGACGAAGCACACCCCCGGCTTGCCACTGACCCGCGCGTAGCCGTCGGCCATGAAGCCGGCGCCCTGCTCGTGGCGGGTCAATACATGGCGAATGCCGCTGcc                                                                                                                    >  2:17924/1‑149 (MQ=255)                            gCTTGGCCGATGGGGGTGGCGACGTTGGTCACGCCTGGGCCGGTGATGACGAAGCACACCCCCGGCTTGCCACTGACCCGCGCGTAGCCGTCGGCCATGAAGCCGGCGCCCTGCTCGTGGCGGGTCAATACATGGCGAATGCCGCTGcc                                                                                                                    >  2:46009/1‑149 (MQ=255)                                 gCCGATGGGGGTGGCGACGTTGGTCACGCCTGGGCCGGTGATGACGAAGTACACCCCCGGCTTGCCACTGACCCGCGCGTAGCCGTCGGCCATGAAGCCGGCGCCCTGCTCGTGGCGGGTCAATACATGGCGAATGCCGCTGCCCGGCa                                                                                                               <  3:216227/149‑1 (MQ=255)                                 gCCGATGGGGGTGGCGACGTTGGTCACGCCTGGGCCGGTGATGACGAAGCACACCCCCGGCTTGCCACTGACCCGCGCGTAGCCGTCGGCCATGAAGCCGGCGCCCTGCTCGTGGCGGGTCAATACATGGCGAATGCCGCTGCCCGGCa                                                                                                               <  7:183860/149‑1 (MQ=255)                                         gggTGGCGACGTTGGTCACGCCTGGGCCGGTGATGACGAAGCACACCCCCGGCTTGCCACTGACCCGCGCGTAGCCGTCGGCCATGAAGCCGGCGCCCTGCTCGTGGCGGGTCAATACATGGCGAATGCCGCTGCCCGGCAG‑GCCACgg                                                                                                      <  7:218574/149‑1 (MQ=255)                                            tGGCGACGTTGGTCACGCCTGGGCCGGTGATGACGAAGCACACCCCCGGCTTGCCACTGACCCGCGCGTAGCCGTCGGCCATGAAGCCGGCGCCCTGCTCGTGGCGGGTCAATACATGGCGAATGCCGCTGCCCGGCAG‑GCCACGGTAc                                                                                                   <  2:273088/149‑1 (MQ=255)                                                     tGGTCACGCCTGGGCCGGTGATGACGAAGCACACCCCCGGCTTGCCACTGACCCGCGCGTAGCCGTCGGCCATGAAGCCGGCGCCCTGCTCGTGGCGGGTCAATACATGGCGAATGCCGCTGCCCGGCAG‑GCCACGGTACAGCTCCAgg                                                                                          <  8:215171/149‑1 (MQ=255)                                                          aCGCCTGGGCCGGTGATGACGAAGCACACCCCCGGCTTGCCACTGACCCGCGCGTAGCCGTCGGCCATGAAGCCGGCGCCCTGCTCGTGGCGGGTCAATACATGGCGAATGCCGCTGCCCGGCAG‑GCCACGGTACAGCTCCAGGgtgt                                                                                      <  2:284401/148‑1 (MQ=255)                                                          aCGCCTGGGCCGGTGATGACGAAGCACACCCCCGGCTTGCCACTGACCCGCGCGTAGCCGTCGGCCATGAAGCCGGCGCCCTGCTCGTGGCGGGTCAATACATGGCGAATGCCGCTGCCCGGCAG‑GCCACGGTACAGCTCCAGGgtgt                                                                                      <  1:28381/148‑1 (MQ=255)                                                          aCGCCTGGGCCGGTGATGACGAAGCACACCCCCGGCTTGCCACTGACCCGCGCGTAGCCGTCGGCCATGAAGCCGGCGCCCTGCTCGTGGCGGGTCAATACATGGCGAATGCCGCTGCCCGGCAG‑GCCACGGTACAGCTCCAGGgtgt                                                                                      >  1:284401/1‑148 (MQ=255)                                                          aCGCCTGGGCCGGTGATGACGAAGCACACCCCCGGCTTGCCACTGACCCGCGCGTAGCCGTCGGCCATGAAGCCGGCGCCCTGCTCGTGGCGGGTCAATACATGGCGAATGCCGCTGCCCGGCAG‑GCCACGGTACAGCTCCAGGgt                                                                                        <  5:307313/146‑1 (MQ=255)                                                          aCGCCTGGGCCGGTGATGACGAAGCACACCCCCGGCTTGCCACTGACCCGCGCGTAGCCGTCGGCCATGAAGCCGGCGCCCTGCTCGTGGCGGGTCAATACATGGCGAATGCCGCTGCCCGGCAG‑GCCACGGTACAGCTCCAGGgt                                                                                        >  6:307313/1‑146 (MQ=255)                                                          aCGCCTGGGCCGGTGAGGACGAAGCACACCCCCGGCTTGCCACTGACCCGCGAGGAGCCGGCGGCCATGAAGCCGGCGCCCTGCTCGTGGCGGGTCAATACATGGCGAATGCCGCTGCCCGGCAG‑GCCACGGTACAGCTCCAGGgtgt                                                                                      <  7:242622/148‑1 (MQ=255)                                                             ccTGGGCCGGTGATGACGAAGCACACCCCCGGCTTGCCACTGACCCGCGCGTAGCCGTCGGCCATGAAGCCGGCGCCCTGCTCGTGGCGGGTCAATACATGGCGAATGCCGCTGCCCGGCAG‑GCCACGGTACAGCTCCAGGGTGTGCAc                                                                                  <  5:323151/149‑1 (MQ=255)                                                              cTGGGCCGGTGATGACGAAGCACACCCCCGGCTTGCCACTGACCCGCGCGTAGCCGTCGGCCATGAAGCCGGCGCCCTGCTCGTGGCGGGTCAATACATGGCGAATGCCGCTGCCCGGCAG‑GCCACGGTACAGCTCCAGGGTGTGCACg                                                                                 >  7:100387/1‑149 (MQ=255)                                                                   ccGGTGATGACGAAGCACACCCCCGGCTTGCCACTGACCCGCGCGTAGCCGTCGGCCATGAAGCCGGCGCCCTGCTCGTGGCGGGTCAATACATGGCGAATGCCGCTGCCCGGCAG‑GCCACGGTACAGCTCCAGGGTGTGCACGCCggg                                                                            <  7:133931/149‑1 (MQ=255)                                                                   ccGGTGATGACGAAGCACACCCCCGGCTTGCCACTGACCCGCGCGTAGCCGTCGGCCATGAAGCCGGCGCCCTGCTCGTGGCGGGTCAATACATGGCGAATGCCGCTGCCCGGCAG‑GCCACGGTACAGCTCCAGGGTGTGCACGCCggg                                                                            <  1:46009/149‑1 (MQ=255)                                                                         atgaCGAAGCACACCCCCGGCTTGCCACTGACCCGCGCGTAGCCGTCGGCCATGAAGCCGGCGCCCTGCTCGTGGCGGGTCAATACATGGCGAATGCCGCTGCCCGGCAG‑GCCACGGTACAGCTCCAGGGTGTGCACGCCGGGGATGc                                                                       <  1:17924/148‑1 (MQ=255)                                                                                aGCACACCCCCGGCTTGCCACTGACCCGCGCGTAGCCGTCGGCCATGAAGCCGGCGCCCTGCTCGTGGCGGGTCAATACATGGCGAATGCCGCTGCCCGGCAG‑GCCACGGTACAGCTCCAGGGTGTGCACGCCGGGGATGCCGAACACg                                                               <  5:63194/149‑1 (MQ=255)                                                                                aGCACACCCCCGGCTTGCCACTGACCCGCGCGTAGCCGTCGGCCATGAAGCCGGCGCCCTGCTCGTGGCGGGTCAATACATGGCGAATGCCGCTGCCCGGCAG‑GCCACGGTACAGCTCCAGGGTGTGCACGCCGGGGATGCCGAACACg                                                               <  8:100387/149‑1 (MQ=255)                                                                                 gCACACCCCCGGCTTGCCACTGACCCGCGCGTAGCCGTCGGCCATGAAGCCGGCGCCCTGCTCGTGGCGGGTCAATACATGGCGAATGCCGCTGCCCGGCAGCGCCACGGTACAGCTCCAGGGTGTGCACGCCGGGGATGCCGAACACg                                                               <  1:238565/149‑1 (MQ=255)                                                                                   acacCCCCGGCTTGCCACTGACCCGCGCGTAGCCGTCGGCCATGAAGCCGGCGCCCTGCTCGTGGCGGGTCAATACATGGCGAATGCCGCTGCCCGGCAG‑GCCACGGTACAGCTCCAGGGTGTGCACGCCGGGGATGCCGAACACGGtc                                                            >  4:311289/1‑149 (MQ=255)                                                                                   acacCCCCGGCTTGCCACTGACCCGCGCGTAGCCGTCGGCCATGAAGCCGGCGCCCTGCTCGTGGCGGGTCAATACATGGCGAATGCCGCTGCCCGGCAG‑GCCACGGTACAGCTCCACGGTGTGCACGCCGGGGATGCCGAACACGGtc                                                            >  3:64492/1‑149 (MQ=255)                                                                                       ccccGGCTTGCCACTGACCCGCGCGTAGCCGTCGGCCATGAAGCCGGCGCCCTGCTCGTGGCGGGTCAATACATGGCGAATGCCGCTGCCCGGCAG‑GCCACGGTACAGCTCCAGGGTGTGCACGCCGGGGATGCCGAACACg                                                               <  8:77721/142‑1 (MQ=255)                                                                                       ccccGGCTTGCCACTGACCCGCGCGTAGCCGTCGGCCATGAAGCCGGCGCCCTGCTCGTGGCGGGTCAATACATGGCGAATGCCGCTGCCCGGCAG‑GCCACGGTACAGCTCCAGGGTGTGCACGCCGGGGATGCCGAACACg                                                               >  7:77721/1‑142 (MQ=255)                                                                                         ccGGCTTGCCACTGACCCGCGCGTAGCCGTCGGCCATGAAGCCGGCGCCCTGCTCGTGGCGGGTCAATACATGGCGAATGCCGCTGCCCGGCAG‑GCCACGGTACAGCTCCAGGGTGTGCACGCCGGGGATGCCGAACACGGTCTCCACg                                                      >  4:97850/1‑149 (MQ=255)                                                                                         ccGGCTTGCCACTGACCCGCGCGTAGCCGTCGGCCATGAAGCCGGCGCCCTGCTCGTGGCGGGTCAATACATGGCGAATGCCGCTGCCCGGCAG‑GCCACGGTACAGCTCCAGGGTGTGCACGCCGGGGATGCCGAACACGGTCTCCACg                                                      >  4:170071/1‑149 (MQ=255)                                                                                           ggCTTGCCACTGACCCGCGCGTAGCCGTCGGCCATGAAGCCGGCGCCCTGCTCGTGGCGGGTCAATACATGGCGAATGCCGCTGCCCGGCAG‑GCCACGGTACAGCTCCAGGGTGTGCACGCCGGGGATGCCGAACACGGTCTCCACGcc                                                    <  3:170071/149‑1 (MQ=255)                                                                                                  cACTGACCCGCGCGTAGCCGTCGGCCATGAAGCCGGCGCCCTGCTCGTGgcgggtcagtggcaagccgggggtgtgcttcgtcatcaccggcccaggcgtgaccaacgtcgccacccccatcggccacgcctatgccgactaggtgccg                                              <  5:314346‑M2/149‑101 (MQ=255)                                                                                                      gACCCGCGCGTAGCCGTCAGCCATGAAGCCGGCGCCCTGCTCGTGgcgggtcagtggcaagccgggggtgtgcttcgtcatcaccggcccaggcgtgaccaacgtcgccacccccatcggccaa                                                                   >  2:39458‑M2/1‑45 (MQ=255)                                                                                                      gACCCGCGCGTAGCCGTCAGCCATGAAGCCGGCGCCCTGCTCGTGgcgggtcagtggcaagccgggggtgtgcttcgtcatcaccggcccaggcgtgaccaacgtcgccacccccatcggccaa                                                                   <  1:39458‑M2/124‑80 (MQ=255)                                                                                                         ccGCGCGTAGCCGTCGGCCATGAAGCCGGCGCCCTGCTCGTGGCGGGTCAATACATGGCGAATGCCGCTGCCCGGCAG‑GCCACGGTACAGCTCCAGGGTGTGCACGCCGGGGATGCCGAACACGGTCTCCACGCCGTAGTTGGCcaac                                       >  7:249613/1‑148 (MQ=255)                                                                                                               gTAGCCGTCGGCCATGGAGCCGGCGCCCTGCTCGTGGCGGGTCAATACATGGCGAATGCCGCTGCCCGGCAG‑GCCACGGTACAGCTCCAGGGTGTGCACGCCGGGGATGCCGaa                                                                   >  6:158653/1‑114 (MQ=255)                                                                                                                tAGCCGTCGGCCATGAAGCCGGCGCCCTGCTCGTGGCGGGTCAATACATGGCGAATGCCGCTGCCCGGCAG‑GCCACGGTACAGCTCCAGGGTGTGCACGCCGGGGATGCCGAACACGGTCTCCACGCCGTAGTTGGCCAACAACCGCAc                               <  2:38027/149‑1 (MQ=255)                                                                                                                          ccATGAAGCCGGCGCCCTGCTCGTGGCGGGTCAATACATGGCGAATGCCGCTGCCCGGCAG‑GCCACGGTACAGCTCCAGGGTGTGCACGCCGGGGATGCCGAACACGGTCTCCACGCCGTAGTTGGCCAACAACCGCACCAGTGCCTgg                     >  8:103655/1‑149 (MQ=255)                                                                                                                            aTGAAGCCGGCGCCCTGCTCGTGGCGGGTCAATACATGGCGAATGCCGCTGCCCGGCAG‑GCCACGGTACAGCTCCAGGGTGTGCACGCCGGGGATGCCGAACACGGTCTCCACGCCGTAGTTGGCCAACAACCGCACCAGCGCCTGGcc                   >  6:276276/1‑149 (MQ=255)                                                                                                                                    ggCGCCCTGCTCGTGGCGGGTCAATACATGGCGAATGCCGCTGCCCGGCAG‑GCCACGGTACAGCTCCAGGGTGTGCACGCCGGGGATGCCGAACACGGTCTCCACGCCGTAGTTGGCCAACAACCGCACCAGCGCCTGGCCGGCTGTCa           <  8:249613/149‑1 (MQ=255)                                                                                                                                          cTGCTCGTGGCGGGTCAATACATGGCGAATGCCGCTGCCCGGCAG‑GCCACGGTACAGCTCCAGGGTGTGCACGCCGGGGATGCCGAACACGGTCTCCACGCCGTAGTTGGCCAACAACCGCACCAGCGCCTGGCCGGCTGTCAGGGt       >  4:305839/1‑147 (MQ=255)                                                                                                                                           tGCTCGTGGCGGGTCAATACATGGCGAATGCCGCTGCCCGGCAG‑GCCACGGTACAGCTCCAGGGTGTGCACGCCGGGGATGCCGAACACGGTCTCCACGCCGTAGTTGGCCAACAACCGCACCAGCGCCTGGCCGGCTGTCAGGGTAAg    >  4:174670/1‑149 (MQ=255)                                                                                                                                              tCGTGGCGGGTCAATACATGGCGAATGCCGCTGCCCGGCAG‑GCCACGGTACAGCTCCAGGGTGTGCACGCCGGGGATGCCGAACACGGTCTCCACGCCGTAGCTGGCCAACAACCGCACCAGCGCCTGGCCGGCTGTCAGGGTAAGGt  >  6:147775/1‑148 (MQ=255)                                                                                                                                                  |                                                                                                                                                 ACCAGCATCGGCACCGAGTCGGCATAGGCTTGGCCGATGGGGGTGGCGACGTTGGTCACGCCTGGGCCGGTGATGACGAAGCACACCCCCGGCTTGCCACTGACCCGCGCGTAGCCGTCGGCCATGAAGCCGGCGCCCTGCTCGTGGCGGGTCAATACATGGCGAATGCCGCTGCCCGGCAG‑GCCACGGTACAGCTCCAGGGTGTGCACGCCGGGGATGCCGAACACGGTCTCCACGCCGTAGTTGGCCAACAACCGCACCAGCGCCTGGCCGGCTGTCAGGGTAAGGT  >  NC_002947/4247621‑4247909

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.