New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	4425420 =	51 (0.990)	3 (0.060)	3/250	NT	6.3%	intergenic (‑478/‑322)	PP_5647/PP_3917	hypothetical protein/hypothetical protein
	?	NC_002947	4425465 =	40 (0.810)					intergenic (‑523/‑277)	PP_5647/PP_3917	hypothetical protein/hypothetical protein

GTAGGCGCACACTCAATTTAGCTCAGGACTTCTGAGCATTGAGAGGTGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/4425469‑4425420 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gtgcgCCTACAGAGACTAGAGAAGATTTATATCAGACCGACGGGTACAAACGAAAAAATCAATAACCGGCTCCTGTCAGCACCTCGCAGAGAAAACAGATCGCAGATATTCAGCATGCGTA  >  NC_002947/4425465‑4425580                                                                                                                                                                        GTAGGCGCACACTCAATTTAGCTCAGGACTTCTGAGCATTGAGAGGTGCGCCTACAGAGACTAGAGAAGATTTATATCAGACCGACGGGTACAAACGAAAAAATCAATAACCGGCTCCTGTCAGCACCTCGAAGAGAAAACAactctc                    >  4:64729/1‑142     GCGCACACTCAATTTAGCTCAGGACTTCTGAGCATTGAGAGGTGCGCCTACAGAGACTAGAGAAGATTTATATCAGACCGACGGGTACAAACGAAAAAATCAATAACCGGCTCCT                                                 >  1:217943/1‑115     GCGCACACTCAATTTAGCTCAGGACTTCTGAGCATTGAGAGGTGCGCCTACAGAGACTAGAGAAGATTTATATCAGACCGACGGGTACAAACGAAAAAATCAATAACCGGCTCCT                                                 <  2:217943/115‑1                                                GCGCCTACAGAGACTAGAGAAGATTTATATCAGACCGACGGGTACAAACGAAAAAATCAATAACCGGCTGCTGTCAGCTCCTCGCAGAGAAAACAGATAGCTCATATTCAGCATGCGTA  >  1:272083/1‑119                                                                                                                                                                        GTAGGCGCACACTCAATTTAGCTCAGGACTTCTGAGCATTGAGAGGTGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/4425469‑4425420 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gtgcgCCTACAGAGACTAGAGAAGATTTATATCAGACCGACGGGTACAAACGAAAAAATCAATAACCGGCTCCTGTCAGCACCTCGCAGAGAAAACAGATCGCAGATATTCAGCATGCGTA  >  NC_002947/4425465‑4425580

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.