New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	4425420 =	51 (0.990)	3 (0.060)	3/250	NT	6.3%	intergenic (‑478/‑322)	PP_5647/PP_3917	hypothetical protein/hypothetical protein
	?	NC_002947	4425465 =	40 (0.810)					intergenic (‑523/‑277)	PP_5647/PP_3917	hypothetical protein/hypothetical protein

CGCGCCTCGAAAGGGTCGGTTATCAGTGTAATCGTCGCGATCCTCTGGACGGGCCCTCTTGGAATCATCGTCTGAACCGGTAGGCCAACCGCCATTACGATCTGACTTGCCACTTTGGCCGTTATCCCTATCTCTGGTCATACGCACCTCTCAATGCTCAGAAGTCCTGAGCTAAATTGAGTGTGCGCCTACAGAGACTAGAGAAGATTTATATCAGACCGACGGGTACAAACGAAAAAATCAATAACCGGCTCCTGTCAGCACCTCGCAGAGAAAACAGATCGCA  >  NC_002947/4425278‑4425563                                                                                                                                               |                                                                                                                                                cgcgcCTCGAAAGGGTCGGTTATCAGTGTAATCGTCGCGATCCTCTGGACGGGCCCTCTTGGAATCATCGTCTGAACCGGTAGGCCAACCGCCATTACGATCTGACTTGCCACTTTGGCCGTTATCCCTATCTCTGGTCATACGCAc                                                                                                                                             <  2:241224/147‑1 (MQ=255)   cgcCTCGAAAGGGTCGGTTATCAGTGTAATCGTCGCGATCCTCTGGACGGGCCCTCTTGGAATCATCGTCTGAACCGGTAGGCCAACCGCCATTACGATCTGACTTGCCACTTTGGCCGTTATCCCTATCTCTGGTCATACGCACctct                                                                                                                                         <  7:70651/149‑1 (MQ=255)         gAAAGGGTCGGTTATCAGTGTAATCGTCGCGATCCTCTGGACGGGCCCTCTTGGAATCATCGTCTGAACCGGTAGGCCAACCGCCATTACGATCTGACTTGCCACTTTGGCCGTTATCCCTATCTCTGGTCATACGCACCTCTCAATGc                                                                                                                                   >  8:17022/1‑149 (MQ=255)          aaaGGGTCGGTTATCAGTGTAATCGTCGCGCTCCTCTGGACGGGCCCTCTTGGAATCATCGTCTGAACCGGTAGGCCAACCGCCATTACGATCTGACTTGCCACTTTGGCCGTTATCCCTATCTCTGGTCATACGCACCTCTCAATGCt                                                                                                                                  <  2:291981/149‑1 (MQ=255)               gTCGGTTATCAGTGTAATCGTCGCGATCCTCTGGACGGGCCCTCTTGGAATCATCGTCTGAACCGGTAGGCCAACCGCCATTACGATCTGACTTGCCACTTTGGCCGTTATCCCTATCTCTGGTCATACGCCCCTATCAATGCTCAGaa                                                                                                                             >  3:252356/1‑149 (MQ=255)                tCGGTTATCAGTGTAATCGTCGCGATCCTCTGGACGGGCCCTCTTGGAATCATCGTCTGAACCGGTAGGCCAACCGCCATTACGATCTGACTTGCCACTTTGGCCGTTATCCCTATCTCTGGTCATACGCACCTCTCAATGCTCAGAAg                                                                                                                            >  8:191065/1‑149 (MQ=255)                    ttcgcAGTGTACTCGTCGCGATCCTCTCGACGGGCCCTCTTGGAATCATCGTCTGAACCGGTAGGCCAACCGCCATTACGATCTGACTTGCCACTTTGGCCGTTATCCCTATCTCTGGTCATACGCACCTCTCAATGCTCAGAAGTc                                                                                                                          <  4:252356/143‑1 (MQ=255)                    ttATCTGTGTAATCGTCGCGATCCTCTGGAGGGGCCCTCTTGGATGCATCGTCTGAACCGGTAGGCCAACCGCCATTACGATCTGACTTGCGACTTTGGCCGTTATCCCTCTCTCTGGTCATACGCACCTCTCAATGCTCAGAAGTc                                                                                                                          <  3:210003/147‑1 (MQ=255)                    ttATCAGTGTAATCGTCGCGATCCTCTGGACGGGCCCTCTTGGAATCATCGTCTGAACCGGTAGGCCAACCGCCATTACGATCTGACTTGCCACTTTGGCCGTTATCCCTATCTCTGGTCATACGCACCTCTCAATGCTCAGAAGTCCt                                                                                                                        <  8:11224/149‑1 (MQ=255)                       tCAGTGTAATCGTCGCGATCCTCTGGACGGGCCCTCTTGGAATCATCGTCTGAACCGGTAGGCCAACCGCCATTACGATCTGACTTGCCACTTTGGCCGTTATCCCTATCTCTGGTCATACGCACCTCTCAATGCTCAGAAGTCCTGa                                                                                                                      <  1:243567/148‑1 (MQ=255)                       tCAGTGTAATCGTCGCGATCCTCTGGACGGGCCCTCTTGGAATCATCGTCTGAACCGGTAGGCCAACCGCCATTACGATCTGACTTGCCACTTTGGCCGTTATCCCTATCTCTGGTCATACGCACCTCTCAATGCTCAGAAGTCCTGa                                                                                                                      <  4:60057/148‑1 (MQ=255)                         aGTGTAATCGTCGCGATCCTCTGGACGGGCCCTCTTGGAATCATCGTCTGAACCGGTAGGCCAACCGCCATTACGATCTGACTTGCCACTTTGGCCGTTATCCCTATCTCTGGTCATACGCACCTCTCAATGCTCAGAAGTCCTGAGc                                                                                                                    >  6:327299/1‑148 (MQ=255)                           tgtAATCGTCGCGATCCTCTGGACGGGCCCTCTTGGAATCATCGTCTGAACCGGTAGGCCAACCGCCATTACGATCTGACTTGCCACTTTGGCCGTTATCCCTATCTCTGGTCATACGCAc                                                                                                                                             >  3:155881/1‑121 (MQ=255)                           tgtAATCGTCGCGATCCTCTGGACGGGCCCTCTTGGAATCATCGTCTGAACCGGTAGGCCAACCGCCATTACGATCTGACTTGCCACTTTGGCCGTTATCCCTATCTCTGGTCATACGCAc                                                                                                                                             <  4:155881/121‑1 (MQ=255)                           tacgcatgctgaatatgagctatctgttttctctgcgaggagctgacagcagccggttattgattttttcgtttgtacccgtcggtctgatataaatcttctctagtctctgtaggcgc                                                                                                                                               >  1:272083‑M1/117‑119 (MQ=255)                             tAATCGTCGCGATCCTCTGGACGGGCCCTCTTGGAATCATCGTCTGAACCGGTAGGCCAACCGCCATTACGATCTGACTTGCCACTTTGGCCGTTATCCCTATCTCTGGTCATACGCACCTCTCAATGCTCAGAAGTCCTGAGCTAAAt                                                                                                               >  1:303063/1‑149 (MQ=255)                             tAATCGCCGCGATCCTCTGGACGGGCCCTCTTGGAATCATCGGCTGAACCGGTAGGCCAACCGCCATTACGATCTGACTTGCCACTTTGGCCGTTATCCCTATCTCTGGGCATACGCACCTCTCAATGCTCAGAAGTCCTGAGCTAAAt                                                                                                               <  4:81395/149‑1 (MQ=255)                               aTCGTCGCGATCCTCTGGACGGGCCCTCTTGGAATCATCGTCTGAACCGGTAGGCCAACCGCCATTACGATCTGACTTGCCACTTTGGCCGTTATCCCTATCTCTGGTCATACGCACCTCTCAATGCTCAGAAGTCCTGAGCTAAAtt                                                                                                              <  5:137658/148‑1 (MQ=255)                                tcgtcgCGATCCTCTGGACGGGCCCTCTTGGAATCATCGTCTGAACCGGTAGGCCAACCGCCATTACGATCTGACTTGCCACTTTGGCCGTTATCCCTATCTCTGGTCATACGCACCTCTCAATGCTCAGAAGTCCTGAGCTAAATTGa                                                                                                            <  3:293531/149‑1 (MQ=255)                                  gtcgCGATCCTCTGGACGGGCCCTCTTGGAATCATCGTCTGAACCGGTAGGCCAACCGCCATTACGATCTGACTTGCCACTTTGGCCGTTATCCCTATCTCTGGTCATACGCAc                                                                                                                                             <  2:258901/114‑1 (MQ=255)                                  gtcgCGATCCTCTGGACGGGCCCTCTTGGAATCATCGTCTGAACCGGTAGGCCAACCGCCATTACGATCTGACTTGCCACTTTGGCCGTTATCCCTATCTCTGGTCATACGCAc                                                                                                                                             >  1:258901/1‑114 (MQ=255)                                  gtcgCGATCCTCTGGACGGGCCCTCTTGGAATCATCGTCTGAACCGGTAGGCCAACCGCCATTACGATCTGACTTGCCACTTTGGCCGTTATCCCTATCTCTGGTCATACGCACCTCTCAATGCTCAGAAGTCCTGAGCTAAATTGAgt                                                                                                          >  1:279625/1‑149 (MQ=255)                                         tCCTCTGGACGGGCCCTCTTGGAATCATCGTCTGAACCGGTAGGCCAACCGCCATTACGATCTGACTTGCCACTTTGGCCGTTATCCCTATCTCTGGTCATACGCACCTCTCAATGCTCAGGACTTCTGAGcat                                                                                                                  >  1:130034/1‑132 (MQ=255)                                         tCCTCTGGACGGGCCCTCTTGGAATCATCGTCTGAACCGGTAGGCCAACCGCCATTACGATCTGACTTGCCACTTTGGCCGTTATCCCTATCTCTGGTCATACGCACCTCTCAATGCTCAGAAGTCCTGAGCTAAATTGAGTGTGCGcc                                                                                                   >  1:78546/1‑149 (MQ=255)                                           ctctGGACGGGCCCTCTTGGAATCATCGTCTGAACCGGTAGGCCAACCGCCATTACGATCTGACTTGCCACTTTGGCCGTTATCCCTATCTCTGGTCATACGCACCTCTCAATGCTCAGAAGTCCTGAGCTAAAtt                                                                                                              >  2:61491/1‑136 (MQ=255)                                           ctctGGACGGGCCCTCTTGGAATCATCGTCTGAACCGGTAGGCCAACCGCCATTACGATCTGACTTGCCACTTTGGCCGTTATCCCTATCTCTGGTCATACGCACCTCTCAATGCTCAGAAGTCCTGAGCTAAAtt                                                                                                              <  1:61491/136‑1 (MQ=255)                                             gagagttgttttctcttcgaggtgctgacaggagccggttattgattttttcgtttgtacccgtcggtctgatataaatcttctctagtctctgtaggCGCACCTCTCAATGCTCAGAAGTCCTGAGCTAAATTGAGTGTGCGCCTAc                                                                                                >  4:64729‑M1/99‑148 (MQ=255)                                              tGGACGGGCCCTCTTGGAATCATCGTCTGAACCGGTAGGCCAACCGCCATTACGATCTGACTTGCCACTTTGGCCGTTATCCCTATCTCTGGTCATACGCACCTCTCAATGCTCAGAAGTCCTGAGCTAAATTGAGTGTGCGCCTa                                                                                                 >  6:21103/1‑146 (MQ=255)                                                  cGGGCCCTCTTGGAATCATCGTCTGAACCGGTAGGCCAACCGCCATTACGATCTGACTTGCCACTTTGGCCGTTATCCCTATCTCTGGTCATACGCACCTCTCAATGCTCAGAAGTCCTGAGCTAAATTGAGTGTGCGCCTACAGAGAc                                                                                          <  7:191065/149‑1 (MQ=255)                                                    ggCCCTCTTGGAATCATCGTCTGAACCGGTAGGCCAACCGCCATTACGATCTGACTTGCCACTTTGGCCGTTATCCCTATCTCTGGTCATACGCACCTCTCAATGCTCAGAAGTCCTGAGCTAAATTGAGTGTGCGCCTACAGAGACTa                                                                                        <  4:311041/149‑1 (MQ=255)                                                     gCCCTCTTGGAATCATCGTCTGAACCGGTAGGCCAACCGCCATTACGATCTGACTTGCCACTTTGGCCGTTATCCCTATCTCTGGTCATACGCACCTCTCAATGCTCAGAAGTCCTGAGCTAAATTGAGTGTGCGCCTACAGAGAc                                                                                          >  1:273333/1‑146 (MQ=255)                                                           ttGGAATCATCGTCTGAACCGGTAGGCCAACCGCCATTACGATCTGACTTGCCACTTTGGCCGTTATCCCTATCTCTGGTCATACGCACCTCTCAATGCTCAGAAGTCCTGAGCTAAATTGAGTGTGCGCCTACAGAGACTAGagaa                                                                                   <  2:78546/147‑1 (MQ=255)                                                             ggAATCATCGTCTGAACCGGTAGGCCAACCGCCATTACGATCTGACTTGCCACTTTGGCCGTTATCCCTATCTCTGGTCATACGCACCTCTCAATGCTCAGAAGTCCTGAGCTAAATTGAGTGTGCGCCTACAGAGACTAGAGAAGAt                                                                                <  7:50173/148‑1 (MQ=255)                                                             ggAATCATCGTCTGAACCGGTAGGCCAACCGCCATTACGATCTGACTTGCCACTTTGGCCGTTATCCCTATCTCTGGTCATACGCACCTCTCAATGCTCAGAAGTCCTGAGCTAAATTGAGTGTGCGCCTACAGAGACTAGAGAAGAt                                                                                <  2:273333/148‑1 (MQ=255)                                                                    tcGTCTGAACCGGTAGGCCAACCGCCATTACGATCTGACTTGCCACTTTGGCCGTTATCCCTATCTCTGGTCATACGCACCTCTCAATGCTCAGAAGTCCTGAGCTAAATTGAGTGTGCGCCTACAGAGACTAGAGAAGATTTATATCa                                                                        <  5:327299/149‑1 (MQ=255)                                                                      gTCTGAACCGGTAGGCCAACCGCCATTACGATCTGACTTGCCACTTTGGCCGTTATCCCTATCTCTGGTCATACGCACCTCTCAATGCTCAGAAGTCCTGAGCTAAATTGAGTGTGCGCCTACAGAGACTAGAGAAGATTTATATCAGa                                                                      >  6:278453/1‑149 (MQ=255)                                                                       tCTGAACCGGTAGGCCAACCGCCATTACGATCTGACTTGCCACTTTGGCCGTTATCCCTATCTCTGGTCATACGCACCTCTCAATGCTCAGAAGTCCTGAGCTAAATTGAGTGTGCGCCTACAGAGACTAGAGAAGATTTATATCAGAc                                                                     <  2:279625/149‑1 (MQ=255)                                                                          aggagccggttattgattttttcgtttgtacccgtcggtctgatataaatcttctctagtctctgtaggCGCACCTCTCAATGCTCAGAAGTCCTGAGCTAAATTGAGTGTgcgc                                                                                                    <  2:217943‑M1/46‑1 (MQ=255)                                                                          aggagccggttattgattttttcgtttgtacccgtcggtctgatataaatcttctctagtctctgtaggCGCACCTCTCAATGCTCAGAAGTCCTGAGCTAAATTGAGTGTgcgc                                                                                                    >  1:217943‑M1/70‑115 (MQ=255)                                                                                gTAGGCCAACCGCCATTACGATCTGACTTGCCACTTTGGCCGTTATCCCTATCTCTGGTCATACGCACCTCTCAATGCTc                                                                                                                                 <  6:262317/80‑1 (MQ=255)                                                                                   gaccAACCGCCATTACGATCTGACTTGCCACTTTGGCCGTTATCCCTATCTCTGGTCATACGCACCTCTCAATGCTCAGAAGTCCTGAGCTAAATTGAGTGTGCGCCTACAGAGACTAGAGAAGATTTATATCAGACCGACGGGTACa                                                          >  1:299021/3‑148 (MQ=255)                                                                                          cGCCATTACGATCTGACTTGCCACTTTGGCCATTATCCCTATCTCTGGTCATACGCACCTCTCAATGCTCAGAAGTCCTGAGCTAAATTGAGTGTGCGCCTACAGAGACTAGAGAAGATTTATATCAGACCGACGGGTACAAACGaaa                                                   >  1:122560/1‑148 (MQ=255)                                                                                                tACGATCTGACTTGCCACTTTGGCCGTTATCCCTATCTCTGGTCATACGCACCTCTCAATGCTCAGAAGTCCTGAGCTAAATTGAGTGTGCGCCTACAGAGACTAGAGAAGATTTATATCAGACCGACGGGTACAAACGAAAAAATCaa                                            >  5:90552/1‑149 (MQ=255)                                                                                                  cGATCGGACTTGCCACTTTGGCCGTTATCCCTATCTCTGGTCATACGCACCTCTCAATGCTCAGAAGTCCTGAGCTAAATTGAGTGTGCGCCTACAGAGACTAGAGAAGATTTATATCAGACCGACGGGTACAAACGAAAAAATCAAt                                           >  7:26341/1‑148 (MQ=255)                                                                                                           ttGCCACTTTGGCCGTTATCCCTATCTCTGGTCATACGCACCTCTCAATGCTCAGAAGTCCTGAGCTAAATTGAGTGTGCGCCTACAGAGACTAGAGAAGATTTATATCAGACCGACGGGTACAAACGAAAAAAt                                               <  2:261546/135‑1 (MQ=255)                                                                                                           ttGCCACTTTGGCCGTTATCCCTATCTCTGGTCATACGCACCTCTCAATGCTCAGAAGTCCTGAGCTAAATTGAGTGTGCGCCTACAGAGACTAGAGAAGATTTATATCAGACCGACGGGTACAAACGAAAAAAt                                               >  1:261546/1‑135 (MQ=255)                                                                                                           ttGCCACTTTGGCCGTTATCCCTATCTCTGGTCATACGCACCTCTCAATGCTCAGAAGTCCTGAGCTAAATTGAGTGTGCGCCTACAGAGACTAGAGAAGATTTATATCAGACCGACGGGTACAAACGAAAAAATCAATAACCGGCTcc                                 >  5:251446/1‑149 (MQ=255)                                                                                                               cACTTTGGCCGTTATCCCTATCTCTGGTCATACGCACCTCTCAATGCTCAGAAGTCCTGAGCTAAATTGAGTGTGCGCCTACAGAGACTAGAGAAGATTTATATCAGACCGACGGGTACAAACGAAAAAATCAATAACCGGCTCCTGTc                             <  5:21103/149‑1 (MQ=255)                                                                                                                 cTTTGGCCGTTATCCCTATCTCTGGTCATACGCACCTCTCAATGCTCAGAAGTCCTGAGCTAAATTGAGTGTGCGCCTACAGAGACTAGAGAAGATTTATATCAGACCGACGGGTACAAACGAAAAAATCAATAACCGGCTCCTGTCAg                           <  2:299021/149‑1 (MQ=255)                                                                                                                 cTTTGGCCGTTATCCCTATCTCTGGTCATACACACCTCTCAATGCTCAGAAGTCCTGAGCTAAATTGAGTGTGCGCCTACAGAGACTAGAGAAGATTtata                                                                           <  2:169882/101‑1 (MQ=255)                                                                                                                 cTTTGGCCGTTATCCCTATCTCTGGTCATACACACCTCTCAATGCTCAGAAGTCCTGAGCTAAATTGAGTGTGCGCCTACAGAGACTAGAGAAGATTtata                                                                           >  1:169882/1‑101 (MQ=255)                                                                                                                   ttGGCCGTTATCCCTATCTCTGGTCATACGCACCTCTCAATGCTCAGAAGTCCTGAGCTAAATTGAGTGTGCGCCTACAGAGACTAGAGAAGATTTATATCAGACCGACGGGTACAAACGAAAAAATCAATAACCGGCTCCTGTCAGCa                         <  7:155194/149‑1 (MQ=255)                                                                                                                     ggCCGTTATCCCTATCTCTGGTCATACGCACCTCTCAATGCTCAGAAGTCCTGAGCTAAATTGAGTGTGCGCCTACAGAGACTAGAGAAGATTTATATCAGACCGACGGGTACAAACGAAAAAATCAATAACCGGCTCCTGTCAGCa                         >  8:155194/1‑147 (MQ=255)                                                                                                                     ggCCATTATCCCTATCTCTGGTCATACGCACCTCTCAATGCTCAGAAGTCCTGAGCTAAATTGAGTGTGCGCCTACAGAGACTAGAGAAGATTTATATCAGACCGACGGGTACAAACGAAAAAATCAATAACCGGCTCCTGTCAGCAc                        <  2:122560/148‑1 (MQ=255)                                                                                                                          ttATCCCTATCTCTGGTCATACGCACCTCTCAATGCTCAGAAGTCCTGAGCTAAATTGAGTGTGCGCCTACAGAGACTAGAGAAGATTTATATCAGACCGACGGGTACAAACGAAAAAATCAATAACCGGCTCCTGTCAGCACCTCg                    >  3:179569/1‑147 (MQ=255)                                                                                                                                cTATCTCTGGTCATACGCACCTCTCAATGCTCAGAAGTCCTGAGCTAAATTGAGTGTGCGCCTACAGAGACTAGAGAAGATTTATATCAGACCGACGGGTACAAACGAAAAAATCAATAGCCGGCTCCTGTCAGCACCTCGCAGAGaa             >  8:214650/1‑148 (MQ=255)                                                                                                                                      ctGGTCATACGCACCTCTCAATGCTCAGAAGTCCTGAGCTAAATTGAGTGTGCGCCTACAGAGACTAGAGAAGATTTATATCAGACCGACGGGTACAAACGAAAAAATCAATAACCGGCTCCTGTCAGCACCTCGCAGAGaaaa           >  2:75409/1‑144 (MQ=255)                                                                                                                                       tGGTCATACGCACCTCTCAATGCTCAGAAGTCCTGAGCTAAATTGAGTGTGCGCCTACAGAGACTAGAGAAGATTTATATCAGACCGACGGGTACAAACGAAAAAATCAATAACCGGCTCCTGTCAGCACCTCGCAGAGAAAACAGATc     >  6:15959/1‑149 (MQ=255)                                                                                                                                         gTCATACGCACCTCTCAATGCTCAGAAGTCCTGAGCTAAATTGAGTGTGCGCCTACAGAGACTAGAGAAGATTTATATCAGACCGACGGGTACAAACGAAAAAATCAATAACCGGCTCCTGTCAGCACCTCGCAGAGAAAACAGATCg    <  6:251446/148‑1 (MQ=255)                                                                                                                                         gTCATACGCACCTCTCAATGCTCAGAAGTCCTGAGCTAAATTGAGTGTGCGCCTACAGAGACTAGAGAAGATTTATATCAGACCGACGGGTACAAACGAAAAAATCAATAACCGGCTCCTGTCAGCACCTCGCAGAGAAAACAGATCg    >  8:189976/1‑148 (MQ=255)                                                                                                                                          tCATACGCACCTCTCAATGCTCAGAAGTCCTGAGCTAAATTGAGTGTGCGCCTACAGAGACTAGAGAAGATTTATATCAGACCGACGGGTACAAACGAAAAAATCAATAACCGGCTCCTGTCAGCACCTCGCAGAGAAAACAGATCGCa  <  5:278453/149‑1 (MQ=255)                                                                                                                                               |                                                                                                                                                CGCGCCTCGAAAGGGTCGGTTATCAGTGTAATCGTCGCGATCCTCTGGACGGGCCCTCTTGGAATCATCGTCTGAACCGGTAGGCCAACCGCCATTACGATCTGACTTGCCACTTTGGCCGTTATCCCTATCTCTGGTCATACGCACCTCTCAATGCTCAGAAGTCCTGAGCTAAATTGAGTGTGCGCCTACAGAGACTAGAGAAGATTTATATCAGACCGACGGGTACAAACGAAAAAATCAATAACCGGCTCCTGTCAGCACCTCGCAGAGAAAACAGATCGCA  >  NC_002947/4425278‑4425563

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.