New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	4427633 =	48 (0.930)	3 (0.060)	3/246	NT	6.8%	intergenic (‑42/+113)	PP_t61/sohB	tRNA‑Cys/peptidase
	?	NC_002947	4427669 =	37 (0.760)					intergenic (‑78/+77)	PP_t61/sohB	tRNA‑Cys/peptidase

GGTGGTAGGCTTGTGGAGTAAACTCAGCCGCCTGCGCTAACACCTTGAACCCGTTGAAATTTTTTTTCGTTCAGGGGGTTGCAAGGTTAAAAGAATGAAGACATAATGGCGCCCATCGAAACGCAGCAAACTTTGAAAAAGGTTCAGCGTTTC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/4427785‑4427633 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcgtttcGATGGGCGCCATTATGTCTTCATTCTTTTAACCTTGCAACCCCCTGAACGAAAAAAAATTTCAACGGGTTCAAGGTGTTAGCGCAGGCGGCTGAGTTTACTCCACAAGCCTACCACCGCGTTCTCCACAGTACCGCTGGCGGC  >  NC_002947/4427669‑4427811                                                                                                                                                                                                                                                                                                          GGTGGTAGGCTTGTGGAGTAAACTCAGCCGCCTGCGCTAACACCTTGAACCCGTTGAAATTTTTTTTCGTTCAGGGGGTTGCAAGGTTAAAAGAATGAAGACATAATGGCGCCCATCGAAACGCAGCAAACTTTGAAAAAGGTTCAGCG                                                                                                                                                     >  4:177825/1‑149  GTGGTAGGCTTTTTGATTAAACTCATCCTCCTGCGCTAAAACCTTGAACCCGTTGAAATTTTTTTGCGTTCAGGGGGTTGCAAGGTTAAAAGAATGAAGACATAATGGCGCCCATCGAAACGCAGCAAACTTTGAAAAAGGTTCAGCGT                                                                                                                                                    <  7:208740/149‑1   TGGTAGGCTTGTGGAGTAAACTCAGCCGCCTGCGCTAACACCTTGAACCCGTTGAAATTTTTTTTCGTTCAGGGGGTTGCAAGGTTAAAAGAATGAAGACATAATGGCGCCCATCGAAACGCAGCAAACTTTGAAAAAGGTTCAGCGTT                                                                                                                                                   <  1:294195/149‑1     GTAGGCTTGTGGAGTAAACTCAGCCGCCTGCGCTAACACCTTGAACCCGTTGAAATTTTTTTTCGTTCAGGGGGTTGCAAGGTTAAAAGAATGAAGACATAATGGCGCCCATCGAAACGCAGCAAACTTAGAAAAAGGTTCAGAGTTT                                                                                                                                                  >  4:312884/1‑148                                                                                                                  CATCGAAACGCAGCAAACTTTGAAAAAGGTTCAGCGTTTCGATGGGCGCCATTATGTCTTCATTCTTTTAACCTTGCAACCCCCTGAACGAAAAAAAATTTCAACGGGTTCAAGGTGTTAGCGCAGGCGGCTGAGTTTACTCAACAAGC                                    >  5:65180/1‑149                                                                                                                   ATCGAAACGCAGCAAACTTTGAAAAAGGTTCAGCGTTTCGATGGGCGCCATTATGTCTTCATTCTTTTAACCTTGCAACCCCCTGAACGAAAAAAAATTTCAACGGGTTCAAGGTGTTAGCGCAGGCGGCTGAGT                                                 >  7:231270/1‑135                                                                                                                   ATCGAAACGCAGCAAACTTTGAAAAAGGTTCAGCGTTTCGATGGGCGCCATTATGTCTTCATTCTTTTAACCTTGCAACCCCCTGAACGAAAAAAAATTTCAACGGGTTCAAGGTGTTAGCGCAGGCGGCTGAGT                                                 <  8:231270/135‑1                                                                                                                                                     GTTTCGATGGGCGCCATTATGTCTTCATTCTTTTAAACTTGCAACCCCCTGAACGAAAAAAAATTTCAACGGGTTCAAGGTGTTAGCGCATGCGGCTGAGTTTACTCCACAAGCCTAACACCGCGTTCTCCACAGTAACGCTGGCGGa  >  3:214810/1‑147                                                                                                                                                                                                                                                                                                          GGTGGTAGGCTTGTGGAGTAAACTCAGCCGCCTGCGCTAACACCTTGAACCCGTTGAAATTTTTTTTCGTTCAGGGGGTTGCAAGGTTAAAAGAATGAAGACATAATGGCGCCCATCGAAACGCAGCAAACTTTGAAAAAGGTTCAGCGTTTC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/4427785‑4427633 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcgtttcGATGGGCGCCATTATGTCTTCATTCTTTTAACCTTGCAACCCCCTGAACGAAAAAAAATTTCAACGGGTTCAAGGTGTTAGCGCAGGCGGCTGAGTTTACTCCACAAGCCTACCACCGCGTTCTCCACAGTACCGCTGGCGGC  >  NC_002947/4427669‑4427811

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.