New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	4427633 =	48 (0.930)	3 (0.060)	3/246	NT	6.8%	intergenic (‑42/+113)	PP_t61/sohB	tRNA‑Cys/peptidase
	?	NC_002947	4427669 =	37 (0.760)					intergenic (‑78/+77)	PP_t61/sohB	tRNA‑Cys/peptidase

GCCGAGGTCGGAATCGAACCGGCGTAGACGGATTTGCAATCCGGAGCATAACCACTTTGCTACTCGGCCTCAAAGGTCGGATCTAGCTGCTTGCGCTTTGCTATCTCCTTGAAACGCTGAACCTTTTTCAAAGTTTGCTGCGTTTCGATGGGCGCCATTATGTCTTCATTCTTTTAACCTTGCAACCCCCTGAACGAAAAAAAATTTCAACGGGTTCAAGGTGTTAGCGCAGGCGGCTGAGTTTACTCCACAAGCCTACCACCGCGTTCTCCACAGTACCGCTGGCGGCCATGC  >  NC_002947/4427523‑4427816                                                                                                                                                   |                                                                                                                                                    gCCGAGGTCGGAATCGAACCGGCGTAGACGGATTTGCAATCCGGAGCATAACCACTTTGCTACTCGGCCTCAAAGGTCGGATCTAGCTGCTTGCGCTTTGCTATCTCCTTGAAACGCTGAACCTTTTTCAAAGTTTGCTGCGTTTCGAt                                                                                                                                                   <  2:318420/149‑1 (MQ=255)  gcttgttgagtaaactcagccgcctgcgctaacaccttgaacccgttgaaattttttttcgttcagggggttgcaaggttaaaagaatgaagacataatggcgcccatcGAAACGCTGAACCTTTTTCAAAGTTTGCTGCGTTTCGATg                                                                                                                                                  >  5:65180‑M1/110‑149 (MQ=255)  ccGAGGTCGGAATCGAACCGGCGTAGACGGATTTGCAATCCGGAGCATAACCACTTTGCTACTCGGCCTCAAAGGTCGGATCTAGCTGCTTGCGCTTTGCTATCTCCTTGAAACGCTGAACCTTTTTCAAAGTTTGCTGCGTTTCGATg                                                                                                                                                  <  6:116564/149‑1 (MQ=255)      ggTCGGAATCGAACCGGCGTAGACGGATTTGCAATCCGGAGCATAACCACTTTGCTACTCGGCCTCAAAGGTCGGATCTAGCTGCTTGCGCTTTGCTATCTCCTTGAAACGCTGAACCTTTTTCAAAGTTTGCTGCGTTTCGATGGgcg                                                                                                                                              <  3:205655/149‑1 (MQ=255)               actcagccgcctgcgctaacaccttgaacccgttgaaattttttttcgttcagggggttgcaaggttaaaagaatgaagacataatggcgcccatcGAAACGCTGAACCTTTTTCAAAGTTTGCTGCGTTTCGAt                                                                                                                                                   <  8:231270‑M1/39‑1 (MQ=255)               actcagccgcctgcgctaacaccttgaacccgttgaaattttttttcgttcagggggttgcaaggttaaaagaatgaagacataatggcgcccatcGAAACGCTGAACCTTTTTCAAAGTTTGCTGCGTTTCGAt                                                                                                                                                   >  7:231270‑M1/97‑135 (MQ=255)                gAACCGGCGTAGACGGATTTGCAATCCGGAGCATAACCACTTTGCTACTCGGCCTCAAAGGTCGGATCTAGCTGCTTGCGCTTTGCTATCTCCTTGAAACGCTGAACCTTTTTCAAAGTTTGCTGCGTTTCGATGGGCGCCATTATGt                                                                                                                                     <  1:265320/148‑1 (MQ=255)                      gCGTAGACGGATTTGCAATCCGGAGCATAACCACTTTGCTACTCGGCCTCAAAGGTCGGATCTAGCTGCTTGCGCTTTGCTATCTCCTTGAAACGCTGAACCTTTTTCAAAGTTTGCTGCGTTTCGATGGGCGCCATTATGTCTTCAt                                                                                                                               >  3:190531/1‑148 (MQ=255)                           gACGGATTTGCAATCCGGAGCATAACCACTTTGCTACTCGGCCTCAAAGGTCGGATCTAGCTGCTTGCGCTTTGCTATCTCCTTGAAACGCTGAACCTTTTTCAAAGTTTGCTGCGTTTCGATGGGCGCCATTATGTCTTCATTCttt                                                                                                                          >  6:284637/1‑148 (MQ=255)                              ggATTTGCAATCCGGAGCATAACCACTTTGCTACTCGGCCTCAAAGGTCGGATCTAGCTGCTTGCGCTTTGCTATCTCCTTGAAACGCTGAACCTTTTTCAAAGTTTGCTGCGTTTCGATGGGCGCCATTATGTCTTCATTCTTTTAAc                                                                                                                      <  4:190531/149‑1 (MQ=255)                              ggATTTGCAATCCGGAGCATAACCACTTTGCTACTCGGCCTCAAAGGTCGGATCTAGCTGCTTGCGCTTAGCTATCTCCTTGAAACGCTGAACCTTTTTCAAAGTTTGCTGCGTTTCGATGGGCGCCATTATGTCTTCATTCTTTTaa                                                                                                                       >  3:187964/1‑148 (MQ=255)                                    gCAATCCGGAGCATAACCACTTTGCTACTCGGCCTCAAAGGTCGGATCTAGCTGCTTGCGCTTTGCTATCTCCTTGAAACGCTGAACCTTTTTCAAAGTTTGCTGCGTTTCGATGGGCGCCATTATGTCTTCATTCTTTTAACCTTGc                                                                                                                 <  5:56592/148‑1 (MQ=255)                                                 tAACCACTTTGCTACTCGGCCTCAAAGGTCGGATCTAGCTGCTTGCGCTTTGCTATCTCCTTGAAACGCTGAACCTTTTTCAAAGTTTGCTGCGTTTCGATGGGCGCCATTATGACTTCATTCTTTTAACCTTGCAACCACCTGAACg                                                                                                    >  3:79781/1‑148 (MQ=255)                                                  aaCCACTTTGCTACTCGGCCTCAAAGGTCGGATCTAGCTGCTTGCGCTTTGCTATCTCCTTGAAACCCTGAACCTTTTTCAAAGTTTGCTGCGTTTCGATGGCCGCCATTATGTCTACATTCTTTTAACCTTGCAACCCCCTGAACGa                                                                                                   >  2:86263/1‑148 (MQ=255)                                                    ccACTTTGCTACTCGGCCTCAAAGGTCGGATCTAGCTGCTTGCGCTTTGCTATCTCCTTGAAACGCTGAACCTTTTTCAAAGTTTGCTGCGTTTCGATGGGCGCCATTATGTCTTCATTc                                                                                                                             >  3:94954/1‑120 (MQ=255)                                                    ccACTTTGCTACTCGGCCTCAAAGGTCGGATCTAGCTGCTTGCGCTTTGCTATCTCCTTGAAACGCTGAACCTTTTTCAAAGTTTGCTGCGTTTCGATGGGCGCCATTATGTCTTCATTc                                                                                                                             <  4:94954/120‑1 (MQ=255)                                                     cACTTTGCTACTCGGCCTCAAAGGTCGGATCTAGCTGCTTGCGCTTTGCTATCTCCTTGAAACGCTGAACCTTTTTCAAAGTTTGCTGCGTTTCGATGGGCGCCATTATGTCTTCATTCTTTTAACCTTGCAACCCCCTGAACGaaaa                                                                                                >  2:446/1‑148 (MQ=255)                                                     cACTTTGCTACTCGGCCTCAAAGGTCGGATCTAGCTGCTTGCGCTTTGCTATCTCCTTGAAACGCTGAACCTTTTTCAAAGTTTGCTGCGTTTCGATGGGCGCCATTATGTCTTCATTCTTTTAACCTTGCAACCCCCTGAACGaaaa                                                                                                >  5:332201/1‑148 (MQ=255)                                                        tttGCTACTCGGCCTCAAAGGTCGGATCTAGCTGCTTGCGCTTTGCTATCTCCTTGAAACGCTGAACCTTTTTCAAAGTTTGCTGCGTTTCGATGGGCGCCATTATGTCTTCATTCtttt                                                                                                                         <  8:46683/120‑1 (MQ=255)                                                        tttGCTACTCGGCCTCAAAGGTCGGATCTAGCTGCTTGCGCTTTGCTATCTCCTTGAAACGCTGAACCTTTTTCAAAGTTTGCTGCGTTTCGATGGGCGCCATTATGTCTTCATTCtttt                                                                                                                         >  7:46683/1‑120 (MQ=255)                                                              aCTCGGCCTCAAAGGTCGGATCTAGCTGCTTGCGCTTTGCTATCTCCTTGAAACGCTGAACCTTTTTCAAAGTTTGCTGCGTTTCGATGGGCGCCATTATGTCTTCATTCTTTTAACCtt                                                                                                                   <  6:226888/120‑1 (MQ=255)                                                              aCTCGGCCTCAAAGGTCGGATCTAGCTGCTTGCGCTTTGCTATCTCCTTGAAACGCTGAACCTTTTTCAAAGTTTGCTGCGTTTCGATGGGCGCCATTATGTCTTCATTCTTTTAACCtt                                                                                                                   >  5:226888/1‑120 (MQ=255)                                                              aCTCGGCCTCAAAGGTCGGATCTAGCTGCTTGCGCTTTGCTATCTCCTTGAAACGCTGAACCTTTTTCAAAGTTTGCTGCGTTTCGATGGGCGCCATTATGTCTTCATTCTTTTAACCTTGCAACCCCCTGAACGAAAAAAAATTTCa                                                                                       >  6:258108/1‑148 (MQ=255)                                                                tCGGCCTCAAAGGTCGGATCTAGCTGCTTGCGCTTTGCTATCTCCTTGAAACGCTGAACCTTTTTCAAAGTTTGCTGCGTTTCGATGGGCGCCATTATGTCTTCATTCTTTTAACCTTGCAACCCCCTGAACGAAAAAAAATTTCAACg                                                                                    >  5:147764/1‑149 (MQ=255)                                                                  tgCCTCAAATGTCGGATGTAGGTTCTTGCGCTTTGCTATCTCGTTTAAACGATGAAGCTTTTTCTATGTTTGCTGCGTTTCGATGGGCGCCTTTATGTCTTGTTTTTTTTAAACTTGCAACTGCCTGAACGAAATAATATTTCatc                                                                                     <  4:187964/145‑3 (MQ=255)                                                                     cTCAAAGGTCGGATCTAGCTGCTTGCGCTTTGCTATCTCCTTGAAACGCTGAACCTTTTTCAAAGTTTGCTGCGTTTCGATGGGCGCCATTATGTCTTCATTCTTTTAACCTTGCAACCCCCTGAACGAAAAAAAATTTCAACGGGtt                                                                                >  3:177825/1‑148 (MQ=255)                                                                        aaaGGTCTGATCTAGCTGCTTGCGCTTTGCTATCTCCTTGAAACGCTGAACCTTTTTCAAAGTTTGCTGCGTTTCGATGGGCGCCATTATGTCTTCATTCTTTTAACCTAGCAACCCCCTGAACGAAAAAAAATTTCAACGGGTTCAAg                                                                            <  7:262811/149‑1 (MQ=255)                                                                        aaaGGTCGGATCTAGCTGCTTGCGCTTTGCTATCTCCTTGAAACGCTGAACCTTTTTCAAAGTTTGCTGCGTTTCGATGGGCGCCATTATGTCTTCATTCTTTTAACCTTGCAACCCCCTGAACGAAAAAAAATTTCAACGGGTTCAAg                                                                            >  3:180763/1‑149 (MQ=255)                                                                        aaaGGTCGGATCTAGCTGCTTGCGCTTTGCTATCTCCTTGAAACGCTGAACCTTTTTCAAAGTTTGCTGCGTTTCGATGGGCGCCATTATGTCTTCATTCTTTTAACCTTGCAACCCCCTGAACGAAAAAAAATTTCAACGGGTTCAAg                                                                            <  6:147764/149‑1 (MQ=255)                                                                          aGGTCGGATCTAGCTGCTTGCGCTTTGCTATCTCCTTGAAACGCTGAACCTTTTTCAAAGTTTGCTGCGTTTCGATGGGCGCCATTATGTCTTCATTCTTTTAACCTTGCAACCCCCTGAACGAAAAAAAATTTCAACGGGTTCAAGgt                                                                          <  6:332201/149‑1 (MQ=255)                                                                                gATCTAGCTGCTTGCGCTTTGCTATCTCCTTGAAACGCTGAACCTTTTTCAAAGTTTGCTGCGTTTCGATGGGCGACATTATGTCTTCATTCTTTTAACCTTGCAACCCCCTGAACGAAAAAAAATTTCAACGGGTTCAAGGTGTTAgc                                                                    >  3:312884/1‑149 (MQ=255)                                                                                      gctgctTGCGCTTTGCTATCTCCTTGAAACGCTGAACCTTATTCAAAGTTTGCTGCGTTTCGATGGGCGCCATTATGTCTTCATTCTTTTAACCTTGCAACCCCCTGAACGAAAAAAAATTTCAACGGGTTCAAGGTGTTAGCGCAgg                                                               <  5:284637/148‑1 (MQ=255)                                                                                       ctgctTGCGCTTTGCTATCTCCTTGAAACGCTGAACCTTTTTCAAAGTTTGCTGCGTTTCGATGGGCGCCATTATGTCTTCATTCTTTTAACCTTGCAACCCCCTGAACGAAAAAAAATTTCAACGGGTTCAAGGTGTTAGCGCAggcg                                                             <  4:180763/149‑1 (MQ=255)                                                                                              cgcTTTGCTATCTCCTTGAAACGCTGAACCTTTTTCAAAGTTTGCTGCGTTTCGATGGGCGCCATTATGTCTTCATTCTTTTAACCTTGCAACCCCCTGAACGAAAAAAAATTTCAACAGGTTCAAGGTGTTAGCGCAGGCGGCTGAg                                                       <  5:258108/148‑1 (MQ=255)                                                                                                 tttGCTATCTCCTTGAAACGCTGAACCTTTTTCAAAGTTTGCTGCGTTTCGATGGGCGCCATTATGTCTTCATTCTTTTAACCTTGCAACCCCCTGAACGAAAAAAAATTTCAACGGGTTCAAGGTGTTAGCGCAGGCGGCTGAGTTTa                                                   >  3:76326/1‑149 (MQ=255)                                                                                                   tGCTATCTCCTTGAAACGCTGAACCTTTTTCAAAGTTTGCTGCGTTTCGATGGGCGCCATTATGTCTTCATTCTTTTAAc                                                                                                                      >  3:316342/1‑80 (MQ=255)                                                                                                   tGCTATCTCCTTGAAACGCTGAACCTTTTTCAAAGTTTGCTGCGTTTCGATGGGCGCCATTATGTCTTCATTCTTTTAAc                                                                                                                      <  4:316342/80‑1 (MQ=255)                                                                                                     cTATCTCCTTGAAACGCTGAACCTTTTTCAAAGTTTGCTGCGTTTCGATGGGCGCCATTATGTCTTCATTCTTTTAACCTTGCAACCCCCTGAACGAAAAAAAATTTCAACGGGTTCAAGGTGTTa                                                                      >  5:317662/1‑126 (MQ=255)                                                                                                     cTATCTCCTTGAAACGCTGAACCTTTTTCAAAGTTTGCTGCGTTTCGATGGGCGCCATTATGTCTTCATTCTTTTAACCTTGCAACCCCCTGAACGAAAAAAAATTTCAACGGGTTCAAGGTGTTa                                                                      <  6:317662/126‑1 (MQ=255)                                                                                                           catcgaaacgcagcaaactttgaaaaaggttcagcgtttcGATGGGCGCCATTATGTCTTCATTCTTTTAACCTTGCAACCCCCTGAACGAAAAAAAATTTCAACGGGTTCAAGGTGTTAGCGCAGGCGGCTGAGTTTACTCAACAAGc                                         >  5:65180‑M2/41‑149 (MQ=255)                                                                                                            cTTGAAACGCTGAACCTTTTTCAAAGTTTGCTGCGTTTCGATGGGCGCCATTATGTCTTCATTCTTTTAACCTTGCAACCCCCTGAACGAAAAAAAATTTCAACGGGTTCAAGGTGTTAGCGCAGGCGGCTGAGTTTACTCCACAAGcc                                        >  4:12805/1‑149 (MQ=255)                                                                                                            atcgaaacgcagcaaactttgaaaaaggttcagcgtttcGATGGGCGCCATTATGTCTTCATTCTTTTAACCTTGCAACCCCCTGAACGAAAAAAAATTTCAACGGGTTCAAGGTGTTAGCGCAGGCGGCTGAGt                                                      >  7:231270‑M2/40‑135 (MQ=255)                                                                                                            atcgaaacgcagcaaactttgaaaaaggttcagcgtttcGATGGGCGCCATTATGTCTTCATTCTTTTAACCTTGCAACCCCCTGAACGAAAAAAAATTTCAACGGGTTCAAGGTGTTAGCGCAGGCGGCTGAGt                                                      <  8:231270‑M2/96‑1 (MQ=255)                                                                                                                AAACTCTGAACCTTTTTCTAAGTTTGCTGCGTTTCGATGGGCGCCATTATGTCTTCATTCTTTTAACCTTGCAACCCCCTGAACGAAAAAAAATTTCAACGGGTTCAAGGTGTTAGCGCAGGCGGCTGAGTTTACTCCACAAGCCTac                                     >  4:312884‑M1/1‑148 (MQ=255)                                                                                                                 AACGCTGAACCTTTTTCAAAGTTTGCTGCGTTTCGATGGGCGCCATTATGTCTTCATTCTTTTAACCTTGCAACCCCCTGAACGAAAAAAAATTTCAACGGGTTCAAGGTGTTAGCGCAGGCGGCTGAGTTTACTCCACAAGCCTacca                                   <  1:294195‑M1/149‑1 (MQ=255)                                                                                                                  ACGCTGAACCTTTTTCAAAGTTTGCTGCGTTTCGATGGGCGCCATTATGTCTTCATTCTTTTAACCTTGCAACCCCCTGAACGCAAAAAAATTTCAACGGGTTCAAGGTTTTAGCGCAGGAGGATGAGTTTAATCAAAAAGCCTaccac                                  <  7:208740‑M1/149‑1 (MQ=255)                                                                                                                   CGCTGAACCTTTTTCAAAGTTTGCTGCGTTTCGATGGGCGCCATTATGTCTTCATTCTTTTAACCTTGCAACCCCCTGAACGAAAAAAAATTTCAACGGGTTCAAGGTGTTAGCGCAGGCGGCTGAGTTTACTCCACAAGCCTaccacc                                 >  4:177825‑M1/1‑149 (MQ=255)                                                                                                                        aaCCTTTTTCAAAGTTTGCTGCGTTTCGATGGGCGCCATTATGTCTTCATTCTTTTAACCTTGCAACCCCCTGAACGAAAAAAAATTTCAACGGGTTCAAGGTGTTAGCGCAGGCGGCTGAGTTTACTCCACAAGCCTACCACcgcg                              <  3:12805/147‑1 (MQ=255)                                                                                                                          ccTTTTTCAAAGTTTGCTGCGTTTCGATGGGCGCCATTATGTCTTCATTCTTTTAACCTTGCAACCCCCTGAACGAAAAAAAATTTCAACGGGTTCAAGGTGTTAGCGCAGGCGGCTGAGTTTACTCCACAAGCCTACCACCGCGTtct                          >  7:152065/1‑149 (MQ=255)                                                                                                                                          ctgcGTTTCGATGGGCGCCATTATGTCTTCATTCTTTTAACCTTGCAACCCCCt                                                                                                         >  3:154380/1‑54 (MQ=255)                                                                                                                                          ctgcGTTTCGATGGGCGCCATTATGTCTTCATTCTTTTAACCTTGCAACCCCCt                                                                                                         <  4:154380/54‑1 (MQ=255)                                                                                                                                              gtttcGATGGGCGCCATTATGTCTTCATTCTTTTAAACTTGCAACCCCCTGAACGAAAAAAAATTTCAACGGGTTCAAGGTGTTAGCGCATGCGGCTGAGTTTACTCCACAAGCCTAACACCGCGTTCTCCACAGTAACGCtggcgga       >  3:214810‑M2/6‑147 (MQ=255)                                                                                                                                                   gATGGGCGCCATTATGTCTTCATTCTTTTAACCTTGCAACCCCCTGAACGAAAAAAAATTTCAACGGGTTCAAGGTGTTAGCGCAGTCGGCTGAGTTTACTCCACAAGCCTaccac                                  <  8:197230/116‑1 (MQ=255)                                                                                                                                                   gATGGGCGCCATTATGTCTTCATTCTTTTAACCTTGCAACCCCCTGAACGAAAAAAAATTTCAACGGGTTCAAGGTGTTAGCGCAGGCGGCTGAGTTTACTCCACAAGCCTaccac                                  >  7:197230/1‑116 (MQ=255)                                                                                                                                                   gATGGGCGCCAATATGTCTTCATTCTTTTAACCTTGCAACCCCCTGAACGAAAAAAAATTTCAACGGGTTCAAGGTGTTAGCGCTGGCGTTTTTTTTTACTTGATAAGCCTACCACCGAGTTCTACACAGTACCGCTGGCGGCCATGc  <  4:79781/148‑1 (MQ=255)                                                                                                                                                   |                                                                                                                                                    GCCGAGGTCGGAATCGAACCGGCGTAGACGGATTTGCAATCCGGAGCATAACCACTTTGCTACTCGGCCTCAAAGGTCGGATCTAGCTGCTTGCGCTTTGCTATCTCCTTGAAACGCTGAACCTTTTTCAAAGTTTGCTGCGTTTCGATGGGCGCCATTATGTCTTCATTCTTTTAACCTTGCAACCCCCTGAACGAAAAAAAATTTCAACGGGTTCAAGGTGTTAGCGCAGGCGGCTGAGTTTACTCCACAAGCCTACCACCGCGTTCTCCACAGTACCGCTGGCGGCCATGC  >  NC_002947/4427523‑4427816

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.