New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	4427633 =	48 (0.930)	3 (0.060)	3/246	NT	6.8%	intergenic (‑42/+113)	PP_t61/sohB	tRNA‑Cys/peptidase
	?	NC_002947	4427669 =	37 (0.760)					intergenic (‑78/+77)	PP_t61/sohB	tRNA‑Cys/peptidase

CCTCAATGGCTGCGGGGCTTTCGAATGGTGGAGGCCGAGGTCGGAATCGAACCGGCGTAGACGGATTTGCAATCCGGAGCATAACCACTTTGCTACTCGGCCTCAAAGGTCGGATCTAGCTGCTTGCGCTTTGCTATCTCCTTGAAACGCTGAACCTTTTTCAAAGTTTGCTGCGTTTCGATGGGCGCCATTATGTCTTCATTCTTTTAACCTTGCAACCCCCTGAACGAAAAAAAATTTCAACGGGTTCAAGGTGTTAGCGCAGGCGGCTGAGTTTACTCCACAAGCC  >  NC_002947/4427490‑4427778                                                                                                                                                |                                                                                                                                                  tccgccagcgttactgtggagaacgcggtgttaggcttgtggagtaaactcagccgcatgcgctaacaccttgaacccgttgaaattttttttcgttcagggggttgcaagtttaaaagaatgaagacataatggcgcccatcGAAAc                                                                                                                                               >  3:214810‑M1/144‑148 (MQ=255)      aTGGCTGCGGGGCTTTCGAATGGTGGAGGCCGAGGTCGGAATCGAACCGGCGTAGACGGATTTGCAATCCGGAGCATAACCACTTTGCTACTCGGCCTCAAAGGTCGGATCTAGCTGCTTGCGCTTTGCTATCTCCTTGAAACGCTGaa                                                                                                                                         <  4:237942/149‑1 (MQ=255)             cGGGGCTTTCGAATGGTGGAGGCCGAGGTCGGAATCGAACCGGCGTAGACGGATTTGCAATCCGGAGCATAACCACTTTGCTACTCGGCCTCAAAGGTCGGATCTAGCTGCTTGCGCTTTGCTATCTCCTTGAAACGCTGAACCttttt                                                                                                                                  <  6:220033/149‑1 (MQ=255)               gggCTTTCGAATGGTGGAGGCCGAGGTCGGAATCGAACCGGCGTAGACGGATTTGAAATCCGGAGCATATCCACTTTGCTACTCGGCCTCAAAGGTCGGATCTAGCTGCTTGAGGTTTGCTATCTCCTTGATACGCTGAACCTTTTTc                                                                                                                                 >  8:262811/1‑148 (MQ=37)                ggCTTTCGAATGGTGGAGGCCGAGGTCGGAATCGAACCGGCGTAGACGGATTTGCAATCCGGAGCATAACCACTTTGCTACTCGGCCTCAAAGGTCGGATCTAGCTGCTTGCGCTTTGCTATCTCCTTGAAACGCTGAACCTTTTTCaa                                                                                                                               <  3:266847/149‑1 (MQ=255)                 gCTTTCGAATGGTGGAGGCCGAGGTCGGAATCGAACCGGCGTAGACGGATTTGCAATCCGGAGCATAACCACTTTGCTACTCGGCCTCAAAGGTCGGATCTAGCTGCTTGCGCTTTGCTATCTCCTTGAAACGCTGAACCTTTTTCaaa                                                                                                                              <  6:148857/149‑1 (MQ=255)                 gCTTTCGAATGGTGGAGGCCGAGGTCGGAATCGAACCGGCGTAGACGGATTTGCAATCCGGAGCATAACCACTTTGCTACTCGGCCTCAAAGGTCGGATCTAGCTGCTTGCGCTTTGCTATCTCCTTGAAACGCTGAACCTTTTTCaaa                                                                                                                              <  7:166206/149‑1 (MQ=255)                                  gCCGAGGTCGGAATCGAACCGGCGTAGACGGATTTGCAATCCGGAGCATAACCACTTTGCTACTCGGCCTCAAAGGTCGGATCTAGCTGCTTGCGCTTTGCTATCTCCTTGAAACGCTGAACCTTTTTCAAAGTTTGCTGCGTTTCGAt                                                                                                             <  2:318420/149‑1 (MQ=255)                                   gcttgttgagtaaactcagccgcctgcgctaacaccttgaacccgttgaaattttttttcgttcagggggttgcaaggttaaaagaatgaagacataatggcgcccatcGAAACGCTGAACCTTTTTCAAAGTTTGCTGCGTTTCGATg                                                                                                            >  5:65180‑M1/110‑149 (MQ=255)                                   ccGAGGTCGGAATCGAACCGGCGTAGACGGATTTGCAATCCGGAGCATAACCACTTTGCTACTCGGCCTCAAAGGTCGGATCTAGCTGCTTGCGCTTTGCTATCTCCTTGAAACGCTGAACCTTTTTCAAAGTTTGCTGCGTTTCGATg                                                                                                            <  6:116564/149‑1 (MQ=255)                                       ggTCGGAATCGAACCGGCGTAGACGGATTTGCAATCCGGAGCATAACCACTTTGCTACTCGGCCTCAAAGGTCGGATCTAGCTGCTTGCGCTTTGCTATCTCCTTGAAACGCTGAACCTTTTTCAAAGTTTGCTGCGTTTCGATGGgcg                                                                                                        <  3:205655/149‑1 (MQ=255)                                        gTCGGAATCGAACCGGCGTAGACGGATTTGCAATCCGGAGCATAACCACTTTGCTACTCGGCCTCAAAGGTCGGATCTAGCTGCTTGCGCTTTGCTATCTCCTTGAAACGCTGAACCTTTTTCAAAGTTtg                                                                                                                         <  6:16851/131‑1 (MQ=255)                                        gTCGGAATCGAACCGGCGTAGACGGATTTGCAATCCGGAGCATAACCACTTTGCTACTCGGCCTCAAAGGTCGGATCTAGCTGCTTGCGCTTTGCTATCTCCTTGAAACGCTGAACCTTTTTCAAAGTTtg                                                                                                                         >  5:16851/1‑131 (MQ=255)                                                actcagccgcctgcgctaacaccttgaacccgttgaaattttttttcgttcagggggttgcaaggttaaaagaatgaagacataatggcgcccatcGAAACGCTGAACCTTTTTCAAAGTTTGCTGCGTTTCGAt                                                                                                             <  8:231270‑M1/39‑1 (MQ=255)                                                actcagccgcctgcgctaacaccttgaacccgttgaaattttttttcgttcagggggttgcaaggttaaaagaatgaagacataatggcgcccatcGAAACGCTGAACCTTTTTCAAAGTTTGCTGCGTTTCGAt                                                                                                             >  7:231270‑M1/97‑135 (MQ=255)                                                 gAACCGGCGTAGACGGATTTGCAATCCGGAGCATAACCACTTTGCTACTCGGCCTCAAAGGTCGGATCTAGCTGCTTGCGCTTTGCTATCTCCTTGAAACGCTGAACCTTTTTCAAAGTTTGCTGCGTTTCGATGGGCGCCATTATGt                                                                                               <  1:265320/148‑1 (MQ=255)                                                  aaCCGGCGTAGACGGATTTGCAATCCGGAGCATAACCACTTTGCTACTCGGCATCAAAGGTCGGATCTAGCTGCTTGCGCTTTGCTATCTCCTTGAAACGCTGAACCTTTTTCAAAGTTTGCTGCGTTTc                                                                                                                <  5:326049/130‑1 (MQ=255)                                                  aaCCGGCGTAGACGGATTTGCAATCCGGAGCATAACCACTTTGCTACTCGGCATCAAAGGTCGGATCTAGCTGCTTGCGCTTTGCTATCTCCTTGAAACGCTGAACCTTTTTCAAAGTTTGCTGCGTTTc                                                                                                                >  6:326049/1‑130 (MQ=255)                                                       gCGTAGACGGATTTGCAATCCGGAGCATAACCACTTTGCTACTCGGCCTCAAAGGTCGGATCTAGCTGCTTGCGCTTTGCTATCTCCTTGAAACGCTGAACCTTTTTCAAAGTTTGCTGCGTTTCGATGGGCGCCATTATGTCTTCAt                                                                                         >  3:190531/1‑148 (MQ=255)                                                            gACGGATTTGCAATCCGGAGCATAACCACTTTGCTACTCGGCCTCAAAGGTCGGATCTAGCTGCTTGCGCTTTGCTATCTCCTTGAAACGCTGAACCTTTTTCAAAGTTTGCTGCGTTTCGATGGGCGCCATTATGTCTTCATTCttt                                                                                    >  6:284637/1‑148 (MQ=255)                                                               ggATTTGCAATCCGGAGCATAACCACTTTGCTACTCGGCCTCAAAGGTCGGATCTAGCTGCTTGCGCTTTGCTATCTCCTTGAAACGCTGAACCTTTTTCAAAGTTTGCTGCGTTTCGATGGGCGCCATTATGTCTTCATTCTTTTAAc                                                                                <  4:190531/149‑1 (MQ=255)                                                               ggATTTGCAATCCGGAGCATAACCACTTTGCTACTCGGCCTCAAAGGTCGGATCTAGCTGCTTGCGCTTAGCTATCTCCTTGAAACGCTGAACCTTTTTCAAAGTTTGCTGCGTTTCGATGGGCGCCATTATGTCTTCATTCTTTTaa                                                                                 >  3:187964/1‑148 (MQ=255)                                                                   ttGCAATCCGGAGCATAACCACTTTGCTACTCGGCCTCAAAGGTCGGATCTAGCTGCTTGCGCTTTGCTATCTCCTTGAAACGCTGAACCTTTTTCAAAGTTtgct                                                                                                                       >  6:79475/1‑106 (MQ=255)                                                                   ttGCAATCCGGAGCATAACCACTTTGCTACTCGGCCTCAAAGGTCGGATCTAGCTGCTTGCGCTTTGCTATCTCCTTGAAACGCTGAACCTTTTTCAAAGTTtgct                                                                                                                       <  5:79475/106‑1 (MQ=255)                                                                     gCAATCCGGAGCATAACCACTTTGCTACTCGGCCTCAAAGGTCGGATCTAGCTGCTTGCGCTTTGCTATCTCCTTGAAACGCTGAACCTTTTTCAAAGTTTGCTGCGTTTCGATGGGCGCCATTATGTCTTCATTCTTTTAACCTTGc                                                                           <  5:56592/148‑1 (MQ=255)                                                                                  tAACCACTTTGCTACTCGGCCTCAAAGGTCGGATCTAGCTGCTTGCGCTTTGCTATCTCCTTGAAACGCTGAACCTTTTTCAAAGTTTGCTGCGTTTCGATGGGCGCCATTATGACTTCATTCTTTTAACCTTGCAACCACCTGAACg                                                              >  3:79781/1‑148 (MQ=255)                                                                                   aaCCACTTTGCTACTCGGCCTCAAAGGTCGGATCTAGCTGCTTGCGCTTTGCTATCTCCTTGAAACCCTGAACCTTTTTCAAAGTTTGCTGCGTTTCGATGGCCGCCATTATGTCTACATTCTTTTAACCTTGCAACCCCCTGAACGa                                                             >  2:86263/1‑148 (MQ=255)                                                                                     ccACTTTGCTACTCGGCCTCAAAGGTCGGATCTAGCTGCTTGCGCTTTGCTATCTCCTTGAAACGCTGAACCTTTTTCAAAGTTTGCTGCGTTTCGATGGGCGCCATTATGTCTTCATTc                                                                                       <  4:94954/120‑1 (MQ=255)                                                                                     ccACTTTGCTACTCGGCCTCAAAGGTCGGATCTAGCTGCTTGCGCTTTGCTATCTCCTTGAAACGCTGAACCTTTTTCAAAGTTTGCTGCGTTTCGATGGGCGCCATTATGTCTTCATTc                                                                                       >  3:94954/1‑120 (MQ=255)                                                                                      cACTTTGCTACTCGGCCTCAAAGGTCGGATCTAGCTGCTTGCGCTTTGCTATCTCCTTGAAACGCTGAACCTTTTTCAAAGTTTGCTGCGTTTCGATGGGCGCCATTATGTCTTCATTCTTTTAACCTTGCAACCCCCTGAACGaaaa                                                          >  2:446/1‑148 (MQ=255)                                                                                      cACTTTGCTACTCGGCCTCAAAGGTCGGATCTAGCTGCTTGCGCTTTGCTATCTCCTTGAAACGCTGAACCTTTTTCAAAGTTTGCTGCGTTTCGATGGGCGCCATTATGTCTTCATTCTTTTAACCTTGCAACCCCCTGAACGaaaa                                                          >  5:332201/1‑148 (MQ=255)                                                                                         tttGCTACTCGGCCTCAAAGGTCGGATCTAGCTGCTTGCGCTTTGCTATCTCCTTGAAACGCTGAACCTTTTTCAAAGTTTGCTGCGTTTCGATGGGCGCCATTATGTCTTCATTCtttt                                                                                   <  8:46683/120‑1 (MQ=255)                                                                                         tttGCTACTCGGCCTCAAAGGTCGGATCTAGCTGCTTGCGCTTTGCTATCTCCTTGAAACGCTGAACCTTTTTCAAAGTTTGCTGCGTTTCGATGGGCGCCATTATGTCTTCATTCtttt                                                                                   >  7:46683/1‑120 (MQ=255)                                                                                               aCTCGGCCTCAAAGGTCGGATCTAGCTGCTTGCGCTTTGCTATCTCCTTGAAACGCTGAACCTTTTTCAAAGTTTGCTGCGTTTCGATGGGCGCCATTATGTCTTCATTCTTTTAACCtt                                                                             <  6:226888/120‑1 (MQ=255)                                                                                               aCTCGGCCTCAAAGGTCGGATCTAGCTGCTTGCGCTTTGCTATCTCCTTGAAACGCTGAACCTTTTTCAAAGTTTGCTGCGTTTCGATGGGCGCCATTATGTCTTCATTCTTTTAACCtt                                                                             >  5:226888/1‑120 (MQ=255)                                                                                               aCTCGGCCTCAAAGGTCGGATCTAGCTGCTTGCGCTTTGCTATCTCCTTGAAACGCTGAACCTTTTTCAAAGTTTGCTGCGTTTCGATGGGCGCCATTATGTCTTCATTCTTTTAACCTTGCAACCCCCTGAACGAAAAAAAATTTCa                                                 >  6:258108/1‑148 (MQ=255)                                                                                                 tCGGCCTCAAAGGTCGGATCTAGCTGCTTGCGCTTTGCTATCTCCTTGAAACGCTGAACCTTTTTCAAAGTTTGCTGCGTTTCGATGGGCGCCATTATGTCTTCATTCTTTTAACCTTGCAACCCCCTGAACGAAAAAAAATTTCAACg                                              >  5:147764/1‑149 (MQ=255)                                                                                                   tgCCTCAAATGTCGGATGTAGGTTCTTGCGCTTTGCTATCTCGTTTAAACGATGAAGCTTTTTCTATGTTTGCTGCGTTTCGATGGGCGCCTTTATGTCTTGTTTTTTTTAAACTTGCAACTGCCTGAACGAAATAATATTTCatc                                               <  4:187964/145‑3 (MQ=255)                                                                                                      cTCAAAGGTCGGATCTAGCTGCTTGCGCTTTGCTATCTCCTTGAAACGCTGAACCTTTTTCAAAGTTTGCTGCGTTTCGATGGGCGCCATTATGTCTTCATTCTTTTAACCTTGCAACCCCCTGAACGAAAAAAAATTTCAACGGGtt                                          >  3:177825/1‑148 (MQ=255)                                                                                                         aaaGGTCTGATCTAGCTGCTTGCGCTTTGCTATCTCCTTGAAACGCTGAACCTTTTTCAAAGTTTGCTGCGTTTCGATGGGCGCCATTATGTCTTCATTCTTTTAACCTAGCAACCCCCTGAACGAAAAAAAATTTCAACGGGTTCAAg                                      <  7:262811/149‑1 (MQ=255)                                                                                                         aaaGGTCGGATCTAGCTGCTTGCGCTTTGCTATCTCCTTGAAACGCTGAACCTTTTTCAAAGTTTGCTGCGTTTCGATGGGCGCCATTATGTCTTCATTCTTTTAACCTTGCAACCCCCTGAACGAAAAAAAATTTCAACGGGTTCAAg                                      <  6:147764/149‑1 (MQ=255)                                                                                                         aaaGGTCGGATCTAGCTGCTTGCGCTTTGCTATCTCCTTGAAACGCTGAACCTTTTTCAAAGTTTGCTGCGTTTCGATGGGCGCCATTATGTCTTCATTCTTTTAACCTTGCAACCCCCTGAACGAAAAAAAATTTCAACGGGTTCAAg                                      >  3:180763/1‑149 (MQ=255)                                                                                                           aGGTCGGATCTAGCTGCTTGCGCTTTGCTATCTCCTTGAAACGCTGAACCTTTTTCAAAGTTTGCTGCGTTTCGATGGGCGCCATTATGTCTTCATTCTTTTAACCTTGCAACCCCCTGAACGAAAAAAAATTTCAACGGGTTCAAGgt                                    <  6:332201/149‑1 (MQ=255)                                                                                                                 gATCTAGCTGCTTGCGCTTTGCTATCTCCTTGAAACGCTGAACCTTTTTCAAAGTTTGCTGCGTTTCGATGGGCGACATTATGTCTTCATTCTTTTAACCTTGCAACCCCCTGAACGAAAAAAAATTTCAACGGGTTCAAGGTGTTAgc                              >  3:312884/1‑149 (MQ=255)                                                                                                                       gctgctTGCGCTTTGCTATCTCCTTGAAACGCTGAACCTTATTCAAAGTTTGCTGCGTTTCGATGGGCGCCATTATGTCTTCATTCTTTTAACCTTGCAACCCCCTGAACGAAAAAAAATTTCAACGGGTTCAAGGTGTTAGCGCAgg                         <  5:284637/148‑1 (MQ=255)                                                                                                                        ctgctTGCGCTTTGCTATCTCCTTGAAACGCTGAACCTTTTTCAAAGTTTGCTGCGTTTCGATGGGCGCCATTATGTCTTCATTCTTTTAACCTTGCAACCCCCTGAACGAAAAAAAATTTCAACGGGTTCAAGGTGTTAGCGCAggcg                       <  4:180763/149‑1 (MQ=255)                                                                                                                               cgcTTTGCTATCTCCTTGAAACGCTGAACCTTTTTCAAAGTTTGCTGCGTTTCGATGGGCGCCATTATGTCTTCATTCTTTTAACCTTGCAACCCCCTGAACGAAAAAAAATTTCAACAGGTTCAAGGTGTTAGCGCAGGCGGCTGAg                 <  5:258108/148‑1 (MQ=255)                                                                                                                                  tttGCTATCTCCTTGAAACGCTGAACCTTTTTCAAAGTTTGCTGCGTTTCGATGGGCGCCATTATGTCTTCATTCTTTTAACCTTGCAACCCCCTGAACGAAAAAAAATTTCAACGGGTTCAAGGTGTTAGCGCAGGCGGCTGAGTTTa             >  3:76326/1‑149 (MQ=255)                                                                                                                                    tGCTATCTCCTTGAAACGCTGAACCTTTTTCAAAGTTTGCTGCGTTTCGATGGGCGCCATTATGTCTTCATTCTTTTAAc                                                                                <  4:316342/80‑1 (MQ=255)                                                                                                                                    tGCTATCTCCTTGAAACGCTGAACCTTTTTCAAAGTTTGCTGCGTTTCGATGGGCGCCATTATGTCTTCATTCTTTTAAc                                                                                >  3:316342/1‑80 (MQ=255)                                                                                                                                      cTATCTCCTTGAAACGCTGAACCTTTTTCAAAGTTTGCTGCGTTTCGATGGGCGCCATTATGTCTTCATTCTTTTAACCTTGCAACCCCCTGAACGAAAAAAAATTTCAACGGGTTCAAGGTGTTa                                <  6:317662/126‑1 (MQ=255)                                                                                                                                      cTATCTCCTTGAAACGCTGAACCTTTTTCAAAGTTTGCTGCGTTTCGATGGGCGCCATTATGTCTTCATTCTTTTAACCTTGCAACCCCCTGAACGAAAAAAAATTTCAACGGGTTCAAGGTGTTa                                >  5:317662/1‑126 (MQ=255)                                                                                                                                             cTTGAAACGCTGAACCTTTTTCAAAGTTTGCTGCGTTTCGATGGGCGCCATTATGTCTTCATTCTTTTAACCTTGCAACCCCCTGAACGAAAAAAAATTTCAACGGGTTCAAGGTGTTAGCGCAGGCGGCTGAGTTTACTCCACAAGcc  >  4:12805/1‑149 (MQ=255)                                                                                                                                                |                                                                                                                                                  CCTCAATGGCTGCGGGGCTTTCGAATGGTGGAGGCCGAGGTCGGAATCGAACCGGCGTAGACGGATTTGCAATCCGGAGCATAACCACTTTGCTACTCGGCCTCAAAGGTCGGATCTAGCTGCTTGCGCTTTGCTATCTCCTTGAAACGCTGAACCTTTTTCAAAGTTTGCTGCGTTTCGATGGGCGCCATTATGTCTTCATTCTTTTAACCTTGCAACCCCCTGAACGAAAAAAAATTTCAACGGGTTCAAGGTGTTAGCGCAGGCGGCTGAGTTTACTCCACAAGCC  >  NC_002947/4427490‑4427778

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.