| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 5052526 = | 35 (0.680) | 3 (0.060) | 3/246 | NT | 8.0% | intergenic (‑13/+92) | PP_4452/gsiA | NAD/NADP octopine/nopaline dehydrogenase family protein/glutathione ABC transporter ATP‑binding protein |
| ? | NC_002947 | 5052573 = | 36 (0.740) | intergenic (‑60/+45) | PP_4452/gsiA | NAD/NADP octopine/nopaline dehydrogenase family protein/glutathione ABC transporter ATP‑binding protein | |||||
GTGTATCACCAAGCCGGGGAGGGTCACTTTTACATGGAGCCCGAAGGCGAATGGTGCTGAGTCTGAGCTAGCGGTTCAGGTCTTACCATCATCAAGTAACGAAATGCAGTGCTGTTTCTCGGTGTTTATTTTGAGACCCGGGACGGCACTGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/5052677‑5052526‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcactgcATTTCGTTACTTGATGATGGTAAGACCTGAACCGCTAGCTCAGACTCAGCACCATTCGCCTTCGGGCTCCATGTAAAAGTGACCCTCCCCGGCTTGGTGATACACCCGTGCCGGAGGAATGAAATCATGCGCTTTATACGGA > NC_002947/5052573‑5052714 GTGTATCACCAAGCCGGGGAGGGTCACTTTTACATGGAGCCCGAAGGCGAATGGTGCTGAGTCTGAGCTAGCGGTTCAGGTCTTACCATCATCAAGTAACGAAATGCAGTGCTGTTTCTCGGTGTTTATTTTGAGACCCGGGACGGCAC < 3:273876/149‑1GTGTATCACCAAGCCGGGGAGGGTCACTTTTACATGGAGCCCGAAGGCGAATGGTGCTGAGTCTGAGCTAGCGGTTCAGGTCTTACCATCATCAAGTAACGAAATGCAGTGCTGTTTCTCGGTGTTTATTTTGAGACCCGGGACGGCAC > 7:290304/1‑149 GTAACGAAATGCAGTGCTGTTTCTCGGTGTTTATTTTGAGACCCGGGACGGCACTGCATTTCGTTACTTGATGATGGTAAGACCTGAACCGCTAGCTCAGACTCAGCACCATTCGCCTTCGGGCTCCATGTAAAAGTGACCCTCCCCGG > 4:112194/1‑149 ATGCAGTGCTGTTTCTCGGTGTTTATTTTGAGACCCGGGACGGCACTGCATTTCGTTACTTGATGATGGTAAGACCTGAACCGCTAGCTCAGACTCAGCACCATTCGCCTTCGGGCTCCATGTAAAAGTGACCCTCCCCGGCTTGGTGA > 3:18701/1‑149 TGCAGTGCTGTTTCTCGGTGTTTATTTTGAGACCCGGGACGGCACTGCATTTCGTTACTTGATGATGGTAAGACCTGAACCGCTAGCTCAGACTCAGCACCATTCGCCTTCGGGCTCCATGTAAAAGTGACCCTCCCCGGCTTGGTGAT < 4:18701/149‑1 GCACTGCATTTCGTTACTTGATGATGGTAAGACCTGAACCGCTAGCTCAGACTCAGCACCATTCGCCTTCGGGCTCCATGTAAAAGTGACCCTCCCCGGCTTGGTGATACACCCGTGCCGGAGGAATGAAATCATGCGCTTTATACGGA < 4:273876/149‑1 GCACTGCATTTCGTTACTTGATGATGGTAAGACCTGAACCGCTAGCTCAGACTCAGCACCATTCGCCTTCGGGCTCCATGTAAAAGTGACCCTCCCCGGCTTGGTGATACACCCGTGCCGGAGGAATGAAATCATGCGCTTTATACGGA < 8:58706/149‑1 GTGTATCACCAAGCCGGGGAGGGTCACTTTTACATGGAGCCCGAAGGCGAATGGTGCTGAGTCTGAGCTAGCGGTTCAGGTCTTACCATCATCAAGTAACGAAATGCAGTGCTGTTTCTCGGTGTTTATTTTGAGACCCGGGACGGCACTGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/5052677‑5052526‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcactgcATTTCGTTACTTGATGATGGTAAGACCTGAACCGCTAGCTCAGACTCAGCACCATTCGCCTTCGGGCTCCATGTAAAAGTGACCCTCCCCGGCTTGGTGATACACCCGTGCCGGAGGAATGAAATCATGCGCTTTATACGGA > NC_002947/5052573‑5052714 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |