New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	5052526 =	35 (0.680)	3 (0.060)	3/246	NT	8.0%	intergenic (‑13/+92)	PP_4452/gsiA	NAD/NADP octopine/nopaline dehydrogenase family protein/glutathione ABC transporter ATP‑binding protein
	?	NC_002947	5052573 =	36 (0.740)					intergenic (‑60/+45)	PP_4452/gsiA	NAD/NADP octopine/nopaline dehydrogenase family protein/glutathione ABC transporter ATP‑binding protein

CCGTTACCACGACTTGCAGTCCATGCCGCGTAAGCAAGGCCAATGCCACCAGCTCCGATAATACCTACTTTGTATGACTGCATTTCCAAATCCCAGGTGAAGCAGTGCCGTCCCGGGTCTCAAAATAAACACCGAGAAACAGCACTGCATTTCGTTACTTGATGATGGTAAGACCTGAACCGCTAGCTCAGACTCAGCACCATTCGCCTTCGGGCTCCATGTAAAAGTGACCCTCCCCGGCTTGGTGATACACCCGTGCCGGAGGAATGAAATCATGCGCTTTATACGGA  >  NC_002947/5052425‑5052714                                                                                                                                                     |                                                                                                                                              atcaccaagccggggagggtcacttttacatggagcccgaaggcgaatggtgctgagtctgagctagcggttcaggtcttaccatcatcaagtaacgaaatGCAGTGCCGTCCCGGGTCTCAAAATAAACACCGAGAAACAGCACTGCa                                                                                                                                               <  4:18701‑M1/48‑1 (MQ=255)  tcaccaagccggggagggtcacttttacatggagcccgaaggcgaatggtgctgagtctgagctagcggttcaggtcttaccatcatcaagtaacgaaatGCAGTGCCGTCCCGGGTCTCAAAATAAACACCGAGAAACAGCACTGCAt                                                                                                                                              >  3:18701‑M1/101‑149 (MQ=255)        cACGACTTGCAGTCCATGCCGCGTAAGCAAGGCCAATGCCACCAGCTCCGATAATACATACTTTGTATGACTGCATTTCCAAATCCCAGGTGAAGCAGTGCCGTCCCGGGTCTCAAAATAAACACCGAGAGACAGCACTGCATTTCGt                                                                                                                                         >  8:51818/1‑148 (MQ=255)          ccggggagggtcacttttacatggagcccgaaggcgaatggtgctgagtctgagctagcggttcaggtcttaccatcatcaagtaacgaaatGCAGTGCCGTCCCGGGTCTCAAAATAAACACCGAGAAACAGCACTGCATTTCGTTAc                                                                                                                                      >  4:112194‑M1/93‑149 (MQ=255)                   gTCCATGCCGCGTAAGCAAGGCCAATGCCACCAGCTCCGATAATACCTACTTTGTATGACTGCATTTCCAAATCCCAGGTGAAGCAGTGCCGTCCCGGGTCTCAAAATAAACACCGAGAAACAGCACTGCATTTCGTTACTTGatgatg                                                                                                                             <  7:200327/149‑1 (MQ=255)                    tCCATGCCGCGTAAGCAAGGCCAATGCCACCAGCTCCGATAATACCTACTTTGTATGACTGCATTTCCAAATCCCAGGTGAAGCAGTGCCGTCCCGGGTCTCAAAATAAACACCGAGAAACAGCACTGCATTTCGTTACTTGATGATgg                                                                                                                            <  3:45484/149‑1 (MQ=255)                      cATGCCGCGTAAGCAAGGCCAATGCCACCAGCTCCGATAATACCTACTTTGTATGACTGCATTTCCAAATCCCAGGTGAAGCAGTGCCGTCCCGGGTCTCAAAATAAACACCGAGAAACAGCACTGCATTTCGTTACTTGATGATGGt                                                                                                                           >  7:245662/1‑148 (MQ=255)                        tGCCGCGTAAGCAAGGCCAATGCCACCAGCTCCGATAATACCTACTTTGTATGACTGCATTTCCAAATCCCAGGTGAAGCAGTGCCGTCCCGGGTCTCAAAATAAACACCGAGAAACAGCACTGCATTTCGTTACTTGATGATGGt                                                                                                                           >  3:233926/1‑146 (MQ=255)                          ccGCGTAAGCAAGGCCAATGCCACCAGCTCCGATAATACCTACTTTGTATGACTGCATTTCCAAGTCCCAGGTGAAGCAGTGCCGTCCCGGGTCTCAAAATAAACACCGAGAAACAGCACTGCATTTCGTTACTTGATGATGGTAAGAc                                                                                                                      <  6:5706/149‑1 (MQ=255)                            gcgTAAGCAAGGCCAATGCCACCAGCTCCGATAATACCTACTTTGTATGACTGCATTTCCAAATCCCAGGTGAAGCAGTGCCGTCCCGGGTCTCAAAATAAACACCGAGAAACAGCACTGCATTTCGTTACtt                                                                                                                                    >  7:200951/1‑133 (MQ=255)                            gcgTAAGCAAGGCCAATGCCACCAGCTCCGATAATACCTACTTTGTATGACTGCATTTCCAAATCCCAGGTGAAGCAGTGCCGTCCCGGGTCTCAAAATAAACACCGAGAAACAGCACTGCATTTCGTTACtt                                                                                                                                    <  8:200951/133‑1 (MQ=255)                                 aGCAAGGCCAATGCCACCAGCTCCGATAATACCTACTTTGTATGACTGCATTTCCAAATCCCAGGTGAAGCAGTGCCGTCCCGGGTCTCAAAATAAACACCGAGAAACAGCACTGCATTTCGTTACTTGATGATGGTAAGACCTGAAc                                                                                                                <  6:237324/148‑1 (MQ=255)                                     aGGCCAATGCCACCAGCTCCGATAATACCTACTTTGTATGACTGCATTTCCAAATCCCAGGTGAAGCAGTGCCGTCCCGGGTCTCAAAATAAACACCGAGAAACAGCACTGCATTTCGTTACTTGATGATGGTAAGACCTGAACCGc                                                                                                             >  4:303708/1‑147 (MQ=255)                                               caccaGCTCCGATAATACCTACTTTGTATGACTGCATTTCCAAATCCCAGGTGAAGCAGTGCCGTCCCGGGTCTCAAAATAAACACCGAGAACCAGCACTGCATTTCGTTACTTGATGATGGTAAGACCTGAACCGCTAGCTCAGCCt                                                                                                  >  8:99626/1‑148 (MQ=255)                                                accaGCTCCGATAATACCTACTTTGTATGACTGCATTTCCAAATCCCAGGTGAAGCAGTGCCGTCCCGGGTCTCAAAATAAACACCGAGAAACAGCACTGCATTTCGTTACTTGATGATGGTAAGACCTGAACCGCTAGCTCAGACt                                                                                                  >  7:58706/1‑147 (MQ=255)                                                      tCCGATAATACCTACTTTGTATGACTGCATTTCCAAATCCCAGGTGAAGCAGTGCCGTCCCGGGTCTCAAAATAAACACCGAGAAACAGCACTGCATTTCGTTACTTGATGATGGTAAGACCTGAACCGCTAGCTCa                                                                                                      <  6:306848/137‑1 (MQ=255)                                                      tCCGATAATACCTACTTTGTATGACTGCATTTCCAAATCCCAGGTGAAGCAGTGCCGTCCCGGGTCTCAAAATAAACACCGAGAAACAGCACTGCATTTCGTTACTTGATGATGGTAAGACCTGAACCGCTAGCTCa                                                                                                      >  5:306848/1‑137 (MQ=255)                                                                ccTACTTTGTATGACTGCATTTCCAAATCCCAGGTGAAGCAGTGCCGTCCCGGGTCTCAAAATAAACACCGAGAAACAGCACTGCATTTCGTTACTtga                                                                                                                                  <  7:262057/99‑1 (MQ=255)                                                                ccTACTTTGTATGACTGCATTTCCAAATCCCAGGTGAAGCAGTGCCGTCCCGGGTCTCAAAATAAACACCGAGAAACAGCACTGCATTTCGTTACTtga                                                                                                                                  >  8:262057/1‑99 (MQ=255)                                                                ccTACTTTGTATGACTGCATTTCCAAATCCCAGGTGAAGCAGTGCCGTCCCGGGTCTCAAAATAAACACCGAGAAACAGCACTGCATTTCGTTACTTGATGATGGTAAGACCTGAACCGCTAGCTCAGACTCAGCACCATTCGCCTTCg                                                                                >  2:270836/1‑149 (MQ=255)                                                                   aCTTTGTATGACTGCATTTCCAAATCCCAGGTGAAGCAGTGCCGTCCCGGGTCTCAAAATAAACACCGAGAAACAGCACTGCATTTCGTTACTTGATGATGGTAAGACCTGAACCGCTAGCTCAGACTCAGCACCATTCGCCTTCGGGc                                                                             >  2:54001/1‑149 (MQ=255)                                                                          aTGACTGCATTTCCAAATCCCAGGTGAAGCAGTGCCGTCCCGGGTCTCAAAATAAACACCGAGAAACAGCACTGCATTTCGTTACTTGATGATGGTAAGACCTGAACCGCt                                                                                                            >  8:114357/1‑111 (MQ=255)                                                                          aTGACTGCATTTCCAAATCCCAGGTGAAGCAGTGCCGTCCCGGGTCTCAAAATAAACACCGAGAAACAGCACTGCATTTCGTTACTTGATGATGGTAAGACCTGAACCGCt                                                                                                            <  7:114357/111‑1 (MQ=255)                                                                                            gtaacgaaatgcagtgctgtttctcggtgtttattttgagacccgggacggcactgcATTTCGTTACTTGATGATGGTAAGACCTGAACCGCTAGCTCAGACTCAGCACCATTCGCCTTCGGGCTCCATGTAAAAGTGACCCTCCCCgg                                                    >  4:112194‑M2/58‑149 (MQ=255)                                                                                                  tGAAGCAGTGCCGTCCCGGGTCTCAAAATAAACACCGAGAAACAGCACTGCATTTCGTTACTTGATGATGGTAAGACCTGAACCGCTAGCTCAGACTCAGCACCATTCGCCTTCGGGCTCCATGTAAAAGTGACCCTCCCCGGCTTGGt                                              <  1:210087/149‑1 (MQ=255)                                                                                                    atgcagtgctgtttctcggtgtttattttgagacccgggacggcactgcATTTCGTTACTTGATGATGGTAAGACCTGAACCGCTAGCTCAGACTCAGCACCATTCGCCTTCGGGCTCCATGTAAAAGTGACCCTCCCCGGCTTGGTGa                                            >  3:18701‑M2/50‑149 (MQ=255)                                                                                                     tgcagtgctgtttctcggtgtttattttgagacccgggacggcactgcATTTCGTTACTTGATGATGGTAAGACCTGAACCGCTAGCTCAGACTCAGCACCATTCGCCTTCGGGCTCCATGTAAAAGTGACCCTCCCCGGCTTGGTGAt                                           <  4:18701‑M2/101‑1 (MQ=255)                                                                                                     aGCAGTGCCGTCCCGGGTCTCAAAATAAACACCGAGAAACAGCACTGCATTTCGTTACTTGATGATGGTAAGACCTGAACCGCTAGCTCAGACTCAGCACCATTCGCCTTCGGGCTCCATGTAAAAGTGACCCTCCCCGGCTTGGTGAt                                           <  3:85580/149‑1 (MQ=255)                                                                                                         GTGCCGTCCCGGGTCTCAAAATAAACACCGAGAAACAGCACTGCATTTCGTTACTTGATGATGGTAAGACCTGAACCGCTAGCTCAGACTCAGCACCATTCGCCTTCGGGCTCCATGTAAAAGTGACCCTCCCCGGCTTGGTGATacac                                       >  7:290304‑M1/1‑149 (MQ=255)                                                                                                         GTGCCGTCCCGGGTCTCAAAATAAACACCGAGAAACAGCACTGCATTTCGTTACTTGATGATGGTAAGACCTGAACCGCTAGCTCAGACTCAGCACCATTCGCCTTCGGGCTCCATGTAAAAGTGACCCTCCCCGGCTTGGTGATacac                                       <  3:273876‑M1/149‑1 (MQ=255)                                                                                                                 ccGGGTCTCAAAATAAACACCGAGAAACAGCACTGCATTTCGTTACTTGATGATGGTAAGACCTGAACCGCTAGCTCAGACTCAGCACCATTCGCCTTCGGGCTCCATGTAAAAGTGACCCTCCCCGGCTTGGTGATACACCCGTGcc                                <  4:233926/148‑1 (MQ=255)                                                                                                                    ggTCTCAAAATAAACACCGAGAAACAGCACTGCATTTCGTTACTTGATGATGGTAAGACCTGAACCGCTAGCTCAGACTCAGCACCATTCGCCTTCGGGCTCCATGTAAAAGTGACCCTCCCCGGCTTGGTGATACACCCGTGCCggag                            <  7:51818/149‑1 (MQ=255)                                                                                                                        tcAAAATAAACACCGAGAAACAGCACTGCATTTCGTTACTTGATGATGGTAAGACCTGAACCGCTAGCTCAGACTCAGCACCATTCGCCTTCGGGCTCCATGTAAAAGTGACCCTCCCCGGCTTGGTGATACACCCGTGCCGGAGGAAt                        >  6:265636/1‑149 (MQ=255)                                                                                                                        tcAAAATAAACACCGAGAAACAGCACTGCATTTCGTTACTTGATGATGGTAAGACCTGAACCGCTAGCTCAGACTCAGCACCATTCGCCTTCGGGCTCCATGTAAAAGTGACCCTCCCCGGCTTGGTGATACACCCGTGCCGGAGGAAt                        >  7:218376/1‑149 (MQ=255)                                                                                                                        tcAAAATAAACACCGAGAAACAGCACTGCATTTCGTTACTTGATGATGGTAAGACCTGAACCGCTAGCTCAGACTCAGCACCATTCGCCTTCGGGCTCCATGTAAAAGTGACCCTCCCCGGCTTGGTGATACACCCGTGCCGGAGGAAt                        >  2:194925/1‑149 (MQ=255)                                                                                                                          aaaaTAAACACCGAGAAACAGCACTGCATTTCGTTACTTGATGATGGTAAGACCTGAACCGCTAGCTCAGACTCATCACCATTCGCCTTAGGGCTCCATGTAAAAGTGACCCTCCCCGGATTGGTGATACCCCAGTGCGGGAGGAAtt                       >  4:82835/1‑147 (MQ=255)                                                                                                                          aaaaTAAACACCGAGAAACAGCACTGCATTTCGTTACTTGATGATGGTAAGACCTGAACCGCTAGCTCAGACTCAGCACCATTCGCCTTCGGGCTCCATGTAAAAGTGACCCTCCCCGGCTTGGTGATACACCCGTGCCGGAGGAATGa                      <  1:129342/149‑1 (MQ=255)                                                                                                                             aTAAACACCGAGAAACAGCACTGCATTTCGTTACTTGATGATGGTAAGACCTGAACCGCTAGCTCAGACTCAGCACCATTCGCCTTCGGGCTCCATGTAAAAGTGACCCTCCCCGGCTTGGTGATACACCCGTGCCGGAGGAATGAAAt                   <  3:303708/149‑1 (MQ=255)                                                                                                                                  cacCGAGAAACAGCACTGCATTTCGTTACTTGATGATGGTAAGACCCGAACCGCTAGCTCAGACTCAGCACCATTCGCCTTCGGGCTCCATGTAAAAGTGACCCTCCCCGGCTTGGTGATACACCCGTGCCGGAGGAATGAAATCATgc              >  1:273071/1‑149 (MQ=255)                                                                                                                                     cGAGAAACAGCACTGCATTTCGTTACTTGATGATGGTAAGACCTGAACCGCTAGCTCAGACTCAGCACCATTCGCCTTCGGGCTCCATGTAAAAGTGACCCTCCCCGGCTTGGTGATACACCCGTGCCGGAGGAATGAAATCATGCGCt           <  5:265636/149‑1 (MQ=255)                                                                                                                                     cGAGAAACAGCACTGCATTTCGTTACTTGATGATGGTAAGACCTGAACCGCTAGCTCAGACTCAGCACCATTCGCCTTCGGGCTCCATGTAAAAGTGACCCTCCCCGGCTTGGTGATACACCCGTGCCGGAGGAATGAAATCATGCGCt           <  1:194925/149‑1 (MQ=255)                                                                                                                                      gagaAACAGCACTGCATTTCGTTACTTGATGATGGTAAGACCTGAACCGCTAGCTCAGACTCAGCACCATTCGCCTTCGGGCTCCATGTAAAAGTGACCCTCCCCGGCTTGGTGATACACCCGTGCCGGAGGAATGAAATCATGCGCtt          >  7:42492/1‑149 (MQ=255)                                                                                                                                      gagaAACAGCACTGCATTTCGTTACTTGATGATGGTAAGACCTGAACCGCTAGCTCAGACTCAGCACCATTCGCCTTCGGGCTCCATGTAAAAGTGACCCTCCCCGGCTTGGTGATACACCCGTGCCGGAGGAATGAAATCATGCGCtt          >  2:18366/1‑149 (MQ=255)                                                                                                                                        gacaCAGCACTGCATTTCGTTACTTGATGATGGTAAGACCTGAACCGCTAGCTCAGCCTCAGCACCATTCGCCTTCGGGCTCCATGTAAAAGTGACCCTCCCCGGCGTGGTGATACACCCGTGCCGGAGGAATGAAATCATGCGCTTta        <  7:68372/146‑1 (MQ=255)                                                                                                                                        gaAACAGCACTGCATTTCGTTACTTGATGATGGTAAGACCTGAACCGCTAGCTCAGACTCAGCACCATTCGCCTTCGGGCTCCATGTAAAAGTGACCCTCCCCGGCTTGGTGATACACCCGTGTCGGAGGAATGAAATCATGCGCTTta        >  5:309777/1‑149 (MQ=255)                                                                                                                                           aCAGCACTGCATTTCGTTACTTGATGATGGTAAGACCTGAACCGCTAGCTCAGACTCAGCACCATTCGCCTTCGGGCTCCATGTAAAAGTGACCCTCCCCGGCTTGGTGATACACCCGTGCCGGAGGAATGAAATCATGCGCTTTATAc     <  1:54001/149‑1 (MQ=255)                                                                                                                                              gcactgcATTTCGTTACTTGATGATGGTAAGACCTGAACCGCTAGCTCAGACTCAGCACCATTCGCCTTCGGGCTCCATGTAAAAGTGACCCTCCCCGGCTTGGTGATACACCCGTGCCGGAGGAATGAAATCATGCGCTTTATACGGa  <  4:273876‑M2/142‑1 (MQ=255)                                                                                                                                              gcactgcATTTCGTTACTTGATGATGGTAAGACCTGAACCGCTAGCTCAGACTCAGCACCATTCGCCTTCGGGCTCCATGTAAAAGTGACCCTCCCCGGCTTGGTGATACACCCGTGCCGGAGGAATGAAATCATGCGCTTTATACGGa  <  8:58706‑M2/142‑1 (MQ=255)                                                                                                                                                     |                                                                                                                                              CCGTTACCACGACTTGCAGTCCATGCCGCGTAAGCAAGGCCAATGCCACCAGCTCCGATAATACCTACTTTGTATGACTGCATTTCCAAATCCCAGGTGAAGCAGTGCCGTCCCGGGTCTCAAAATAAACACCGAGAAACAGCACTGCATTTCGTTACTTGATGATGGTAAGACCTGAACCGCTAGCTCAGACTCAGCACCATTCGCCTTCGGGCTCCATGTAAAAGTGACCCTCCCCGGCTTGGTGATACACCCGTGCCGGAGGAATGAAATCATGCGCTTTATACGGA  >  NC_002947/5052425‑5052714

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.