New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	5052526 =	35 (0.680)	3 (0.060)	3/246	NT	8.0%	intergenic (‑13/+92)	PP_4452/gsiA	NAD/NADP octopine/nopaline dehydrogenase family protein/glutathione ABC transporter ATP‑binding protein
	?	NC_002947	5052573 =	36 (0.740)					intergenic (‑60/+45)	PP_4452/gsiA	NAD/NADP octopine/nopaline dehydrogenase family protein/glutathione ABC transporter ATP‑binding protein

CCCAACGAAGGCTGATCCGATGAGCGCCCATTCCAAATCGTGACGCCGTTACCACGACTTGCAGTCCATGCCGCGTAAGCAAGGCCAATGCCACCAGCTCCGATAATACCTACTTTGTATGACTGCATTTCCAAATCCCAGGTGAAGCAGTGCCGTCCCGGGTCTCAAAATAAACACCGAGAAACAGCACTGCATTTCGTTACTTGATGATGGTAAGACCTGAACCGCTAGCTCAGACTCAGCACCATTCGCCTTCGGGCTCCATGTAAAAGTGACCCTCCCCGGCTTGGTGAT  >  NC_002947/5052380‑5052673                                                                                                                                                   |                                                                                                                                                    cccAACGAAGGCTGATCCGATGAGCGCCCATTCCAAATCGTGACGCCGTTACCACGACTTGCAGTCCATGCCGCGTAAGCAAGGCCAATGCCACCAGCTCCGATAATACCTACTTTGTATGACTGCATTTCCAAATCCCAGGTGAAGCa                                                                                                                                                   >  3:242895/1‑149 (MQ=255)  ccAACGAAGGCTGATCCGATGAGCGCCCATTCCAAATCGTGACGCCGTTACCACGACTTGCAGTCCATGCCGCGTAAGCAAGGCCAATGCCACCAGCTCCGATAATACCTACTTTGTATGACTGCATTTCCAAGTCCCAGGTGAAGCAg                                                                                                                                                  >  5:5706/1‑149 (MQ=255)  ccAACGAAGGCTGATCCGATGAGCGCCCATTCCAAATCGTGACGCCGTTACCACGACTTGCAGTCCATGCCGCGTAAGCAAGGCCAATGCCACCAGCTCCGATAATACCTACTTTGTATGACTGCATTTCCAAATCCCAGGTGAAGCAg                                                                                                                                                  >  5:237324/1‑149 (MQ=255)     tccgtataaagcgcatgatttcattcctccggcacgggtgtatcaccaagccggggagggtcacttttacatggagcccgaaggcgaatggtgctgagtctgagctagcggttcaggtcttaccatcatcaagtaacgaaatGCAGTGc                                                                                                                                               <  4:273876‑M1/7‑1 (MQ=255)     tccgtataaagcgcatgatttcattcctccggcacgggtgtatcaccaagccggggagggtcacttttacatggagcccgaaggcgaatggtgctgagtctgagctagcggttcaggtcttaccatcatcaagtaacgaaatGCAGTGc                                                                                                                                               <  8:58706‑M1/7‑1 (MQ=255)           gCTGATCCGATGAGCGCCCATTCCAAATCGTGACGCCGTTACCACGACTTGCAGTCCATGCCGCGTAAGCAAGGCCAATGCCACCAGCTCCGATAATACCTACTTTGTATGACTGCATTTCCAAATCCCAGGTGAAGCAGTGCCGTccc                                                                                                                                         >  5:294350/1‑149 (MQ=255)                  cGATGAGCGCCCATTCCAAATCGTGACGCCGTTACCACGACTTGCAGTCCATGCCGCGTAAGCAAGGCCAATGCCACCAGCTCCGATAATACCTACTTTGTATGACTGCATTTCCAAATCCCAGGTGAAGCAGTGCCGTCCCGGGtctc                                                                                                                                  <  5:276828/149‑1 (MQ=255)                   gATGAGCGCCCATTCCAAATCGTGACGCCGTTACCACGACTTGCAGTCCATGCCGCGTAAGCAAGGCCAATGCCACCAGCTCCGATAATACCTACTTTGTATGACTGCATTTCCAAATCCCAGGTGAAGCAGTGCCGTCCCGGGtctc                                                                                                                                  >  8:274696/1‑148 (MQ=255)                         cgcCCATTCCAAATCGTGACGCCGTTACCACGACTTGCAGTCCATGCCGCGTAAGCAAGGCCAATGCCACCAGCTCCGATAATACCTACTTTGTATGACTGCATTTCCAAATCCCAGGTGAAGCAGTGCCGTCCCGGGTCTCAAAATaa                                                                                                                           <  4:242895/149‑1 (MQ=255)                          gcCCATTCCAAATCGTGACGCCGTTACCACGACTTGCAGTCCATGCCGCGTAAGCAAGGCCAATGCCACCAGCTCCGATAATACCTACTTTGTATGACTGCATTTCCAAATCCCAGGTGAAGCAGTGCCGTCCCGGGTCTCAAAATaaa                                                                                                                          <  6:225109/149‑1 (MQ=255)                            ccATTCCAAATCGTGACGCCGTTACCACGACTTGCAGTCCATGCCGCGTAAGCAAGGCCAATGCCACCAGCTCCGATAATACCTACTTTGTATGACTGCATTTCCAAATCCCAGGTGAAGCAGTGCCGTCCCGGGTCTCAAAATAAaca                                                                                                                        >  4:85580/1‑149 (MQ=255)                              aTTCCAAATCGTGACGCCGTTACCACGACTTGCAGTCCATGCCGCGTAAGCAAGGCCAATGCCACCCGCTCCGATAATACCGACGTTGTATGACTGCATTTCCAAATCCCAGGTGAAGCAGTGCCGTCCCGGGTCTCAAAATAaccacc                                                                                                                      >  8:68372/1‑149 (MQ=255)                              aTTCCAAATCGTGACGCCGTTACCACGACTTGCAGTCCATGCCGCGTAAGCAAGGCCAATGCCACCAGCTCCGATAATACCTACTTTGTATGACTGCATTTCCAAATCCCAGGTGAAGCAGTGCCGTCCCGGGTCTCAAAATAAACAcc                                                                                                                      <  6:294350/149‑1 (MQ=255)                               ttCCAAATCGTGACGCCGTTACCACGACTTGCAGTCCATGCCGCGTAAGCAAGGCCAATGCCACCAGCTCCGATAATACCTACTTTGTATGACTGCATTTCCAAATCCCAGGTGAAGCAGTGCCGTCCCGGGTCTCAAAATAAACAcc                                                                                                                      >  4:45484/1‑148 (MQ=255)                                  cAAATCGTGACGCCGTTACCACGACTTGCAGTCCATGCCGCGTAAGCAAGGCCAATGCCACCAGCTCCGATAATACCTACTTTGTATGACTGCATTTCCAAATCCCAGGTGAAGCAGTGCCGTCCCGGGTCTCAAAATAAACACCgag                                                                                                                   >  2:210087/1‑148 (MQ=255)                                    aaTCGTGACGCCGTTACCACGACTTGCAGTCCATGCCGCGTAAGCAAGGCCAATGCCACCAGCTCCGATAATACCTACTTTGTATGACTGCATTTCCAAATCCCAGGTGAAGCAGTGCCGTCCCGGGTCTCAAAATAAACACCGAGaaa                                                                                                                <  1:172945/149‑1 (MQ=255)                                      tCGTGACGCCGTTACCACGACTTGCAGTCCATGCCGCGTAAGCAAGGCCAATGCCACCAGCTCCGATAATACCTACTTTGTATGACTGCATTTCCAAATCCCAGGTGAAGCAGTGCCGTCCCGGGTCTCAAAATAAACACCGAGaaa                                                                                                                >  8:290304/1‑147 (MQ=255)                                        gTGACGCCGTTACCACGACTTGCAGTCCATGCCGCGTAAGCAAGGCCAATGCCACCAGCTCCGATAATACCTACTTTGTATGACTGCATTTCCAAATCCCAGGTGAAGCAGTGCCGTCCCGGGTCTCAAAATAAACACCGAGAAACAg                                                                                                             <  7:274696/148‑1 (MQ=255)                                           aCGCCGTTACCACGACTTGCAGTCCATGCCGCGTAAGCAAGGCCAATGCCACCAGCTCCGATAATACCTACTTTGTATGACTGCATTTCCAAATCCCAGGTGAAGCAGTGCCGTCCCGGGTCTCAAAATAAACACCGAGAAACAGCACt                                                                                                         <  5:258414/149‑1 (MQ=255)                                              atcaccaagccggggagggtcacttttacatggagcccgaaggcgaatggtgctgagtctgagctagcggttcaggtcttaccatcatcaagtaacgaaatGCAGTGCCGTCCCGGGTCTCAAAATAAACACCGAGAAACAGCACTGCa                                                                                                      <  4:18701‑M1/48‑1 (MQ=255)                                               tcaccaagccggggagggtcacttttacatggagcccgaaggcgaatggtgctgagtctgagctagcggttcaggtcttaccatcatcaagtaacgaaatGCAGTGCCGTCCCGGGTCTCAAAATAAACACCGAGAAACAGCACTGCAt                                                                                                     >  3:18701‑M1/101‑149 (MQ=255)                                               cGTTACCACGACTTGCAGTCCATGCCGCGTAAGCAAGGCCAATGCCACCAGCTCCGATAATACCTACTTTGTATGACTGCATTTCCAAATCCCAGGTGAAGCAGAGCCGTCCCGGGTCTCAAAATAAACACCga                                                                                                                    >  2:118365/1‑134 (MQ=255)                                                     cACGACTTGCAGTCCATGCCGCGTAAGCAAGGCCAATGCCACCAGCTCCGATAATACATACTTTGTATGACTGCATTTCCAAATCCCAGGTGAAGCAGTGCCGTCCCGGGTCTCAAAATAAACACCGAGAGACAGCACTGCATTTCGt                                                                                                >  8:51818/1‑148 (MQ=255)                                                       ccggggagggtcacttttacatggagcccgaaggcgaatggtgctgagtctgagctagcggttcaggtcttaccatcatcaagtaacgaaatGCAGTGCCGTCCCGGGTCTCAAAATAAACACCGAGAAACAGCACTGCATTTCGTTAc                                                                                             >  4:112194‑M1/93‑149 (MQ=255)                                                                gTCCATGCCGCGTAAGCAAGGCCAATGCCACCAGCTCCGATAATACCTACTTTGTATGACTGCATTTCCAAATCCCAGGTGAAGCAGTGCCGTCCCGGGTCTCAAAATAAACACCGAGAAACAGCACTGCATTTCGTTACTTGatgatg                                                                                    <  7:200327/149‑1 (MQ=255)                                                                 tCCATGCCGCGTAAGCAAGGCCAATGCCACCAGCTCCGATAATACCTACTTTGTATGACTGCATTTCCAAATCCCAGGTGAAGCAGTGCCGTCCCGGGTCTCAAAATAAACACCGAGAAACAGCACTGCATTTCGTTACTTGATGATgg                                                                                   <  3:45484/149‑1 (MQ=255)                                                                   cATGCCGCGTAAGCAAGGCCAATGCCACCAGCTCCGATAATACCTACTTTGTATGACTGCATTTCCAAATCCCAGGTGAAGCAGTGCCGTCCCGGGTCTCAAAATAAACACCGAGAAACAGCACTGCATTTCGTTACTTGATGATGGt                                                                                  >  7:245662/1‑148 (MQ=255)                                                                     tGCCGCGTAAGCAAGGCCAATGCCACCAGCTCCGATAATACCTACTTTGTATGACTGCATTTCCAAATCCCAGGTGAAGCAGTGCCGTCCCGGGTCTCAAAATAAACACCGAGAAACAGCACTGCATTTCGTTACTTGATGATGGt                                                                                  >  3:233926/1‑146 (MQ=255)                                                                       ccGCGTAAGCAAGGCCAATGCCACCAGCTCCGATAATACCTACTTTGTATGACTGCATTTCCAAGTCCCAGGTGAAGCAGTGCCGTCCCGGGTCTCAAAATAAACACCGAGAAACAGCACTGCATTTCGTTACTTGATGATGGTAAGAc                                                                             <  6:5706/149‑1 (MQ=255)                                                                         gcgTAAGCAAGGCCAATGCCACCAGCTCCGATAATACCTACTTTGTATGACTGCATTTCCAAATCCCAGGTGAAGCAGTGCCGTCCCGGGTCTCAAAATAAACACCGAGAAACAGCACTGCATTTCGTTACtt                                                                                           >  7:200951/1‑133 (MQ=255)                                                                         gcgTAAGCAAGGCCAATGCCACCAGCTCCGATAATACCTACTTTGTATGACTGCATTTCCAAATCCCAGGTGAAGCAGTGCCGTCCCGGGTCTCAAAATAAACACCGAGAAACAGCACTGCATTTCGTTACtt                                                                                           <  8:200951/133‑1 (MQ=255)                                                                              aGCAAGGCCAATGCCACCAGCTCCGATAATACCTACTTTGTATGACTGCATTTCCAAATCCCAGGTGAAGCAGTGCCGTCCCGGGTCTCAAAATAAACACCGAGAAACAGCACTGCATTTCGTTACTTGATGATGGTAAGACCTGAAc                                                                       <  6:237324/148‑1 (MQ=255)                                                                                  aGGCCAATGCCACCAGCTCCGATAATACCTACTTTGTATGACTGCATTTCCAAATCCCAGGTGAAGCAGTGCCGTCCCGGGTCTCAAAATAAACACCGAGAAACAGCACTGCATTTCGTTACTTGATGATGGTAAGACCTGAACCGc                                                                    >  4:303708/1‑147 (MQ=255)                                                                                            caccaGCTCCGATAATACCTACTTTGTATGACTGCATTTCCAAATCCCAGGTGAAGCAGTGCCGTCCCGGGTCTCAAAATAAACACCGAGAACCAGCACTGCATTTCGTTACTTGATGATGGTAAGACCTGAACCGCTAGCTCAGCCt                                                         >  8:99626/1‑148 (MQ=255)                                                                                             accaGCTCCGATAATACCTACTTTGTATGACTGCATTTCCAAATCCCAGGTGAAGCAGTGCCGTCCCGGGTCTCAAAATAAACACCGAGAAACAGCACTGCATTTCGTTACTTGATGATGGTAAGACCTGAACCGCTAGCTCAGACt                                                         >  7:58706/1‑147 (MQ=255)                                                                                                   tCCGATAATACCTACTTTGTATGACTGCATTTCCAAATCCCAGGTGAAGCAGTGCCGTCCCGGGTCTCAAAATAAACACCGAGAAACAGCACTGCATTTCGTTACTTGATGATGGTAAGACCTGAACCGCTAGCTCa                                                             >  5:306848/1‑137 (MQ=255)                                                                                                   tCCGATAATACCTACTTTGTATGACTGCATTTCCAAATCCCAGGTGAAGCAGTGCCGTCCCGGGTCTCAAAATAAACACCGAGAAACAGCACTGCATTTCGTTACTTGATGATGGTAAGACCTGAACCGCTAGCTCa                                                             <  6:306848/137‑1 (MQ=255)                                                                                                             ccTACTTTGTATGACTGCATTTCCAAATCCCAGGTGAAGCAGTGCCGTCCCGGGTCTCAAAATAAACACCGAGAAACAGCACTGCATTTCGTTACTtga                                                                                         <  7:262057/99‑1 (MQ=255)                                                                                                             ccTACTTTGTATGACTGCATTTCCAAATCCCAGGTGAAGCAGTGCCGTCCCGGGTCTCAAAATAAACACCGAGAAACAGCACTGCATTTCGTTACTtga                                                                                         >  8:262057/1‑99 (MQ=255)                                                                                                             ccTACTTTGTATGACTGCATTTCCAAATCCCAGGTGAAGCAGTGCCGTCCCGGGTCTCAAAATAAACACCGAGAAACAGCACTGCATTTCGTTACTTGATGATGGTAAGACCTGAACCGCTAGCTCAGACTCAGCACCATTCGCCTTCg                                       >  2:270836/1‑149 (MQ=255)                                                                                                                aCTTTGTATGACTGCATTTCCAAATCCCAGGTGAAGCAGTGCCGTCCCGGGTCTCAAAATAAACACCGAGAAACAGCACTGCATTTCGTTACTTGATGATGGTAAGACCTGAACCGCTAGCTCAGACTCAGCACCATTCGCCTTCGGGc                                    >  2:54001/1‑149 (MQ=255)                                                                                                                       aTGACTGCATTTCCAAATCCCAGGTGAAGCAGTGCCGTCCCGGGTCTCAAAATAAACACCGAGAAACAGCACTGCATTTCGTTACTTGATGATGGTAAGACCTGAACCGCt                                                                   >  8:114357/1‑111 (MQ=255)                                                                                                                       aTGACTGCATTTCCAAATCCCAGGTGAAGCAGTGCCGTCCCGGGTCTCAAAATAAACACCGAGAAACAGCACTGCATTTCGTTACTTGATGATGGTAAGACCTGAACCGCt                                                                   <  7:114357/111‑1 (MQ=255)                                                                                                                                               tGAAGCAGTGCCGTCCCGGGTCTCAAAATAAACACCGAGAAACAGCACTGCATTTCGTTACTTGATGATGGTAAGACCTGAACCGCTAGCTCAGACTCAGCACCATTCGCCTTCGGGCTCCATGTAAAAGTGACCCTCCCCGGCTTGGt     <  1:210087/149‑1 (MQ=255)                                                                                                                                                  aGCAGTGCCGTCCCGGGTCTCAAAATAAACACCGAGAAACAGCACTGCATTTCGTTACTTGATGATGGTAAGACCTGAACCGCTAGCTCAGACTCAGCACCATTCGCCTTCGGGCTCCATGTAAAAGTGACCCTCCCCGGCTTGGTGAt  <  3:85580/149‑1 (MQ=255)                                                                                                                                                   |                                                                                                                                                    CCCAACGAAGGCTGATCCGATGAGCGCCCATTCCAAATCGTGACGCCGTTACCACGACTTGCAGTCCATGCCGCGTAAGCAAGGCCAATGCCACCAGCTCCGATAATACCTACTTTGTATGACTGCATTTCCAAATCCCAGGTGAAGCAGTGCCGTCCCGGGTCTCAAAATAAACACCGAGAAACAGCACTGCATTTCGTTACTTGATGATGGTAAGACCTGAACCGCTAGCTCAGACTCAGCACCATTCGCCTTCGGGCTCCATGTAAAAGTGACCCTCCCCGGCTTGGTGAT  >  NC_002947/5052380‑5052673

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.